assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011403355.1_ASM1140335v1	NZ_AP021890	Escherichia coli strain 2017.15.01CC	1	1395166-1395305	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATTCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|50aa|up_9|NZ_AP021890.1_1384145_1384295_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_AP021890.1_1384461_1385235_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_AP021890.1_1385234_1385924_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_AP021890.1_1385926_1386985_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_AP021890.1_1386985_1387804_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_AP021890.1_1387958_1388954_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_AP021890.1_1388994_1389948_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_AP021890.1_1390131_1391184_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_AP021890.1_1391259_1392693_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_AP021890.1_1392875_1395137_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_AP021890.1_1395370_1396654_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_AP021890.1_1396805_1397282_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_AP021890.1_1397340_1398630_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_AP021890.1_1398716_1399757_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_AP021890.1_1399753_1400908_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_AP021890.1_1400894_1401650_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_AP021890.1_1401642_1402320_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_AP021890.1_1402898_1404920_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_AP021890.1_1405111_1406020_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_AP021890.1_1406416_1407406_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_011403355.1_ASM1140335v1	NZ_AP021890	Escherichia coli strain 2017.15.01CC	2	1551714-1551862	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|551aa|up_9|NZ_AP021890.1_1538161_1539814_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_AP021890.1_1539957_1540857_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_AP021890.1_1541313_1542009_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_AP021890.1_1542434_1544093_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_AP021890.1_1544089_1545046_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_AP021890.1_1545196_1546312_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_AP021890.1_1546308_1548255_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_AP021890.1_1548327_1548552_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_AP021890.1_1548874_1549195_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_AP021890.1_1549225_1551502_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_AP021890.1_1552245_1552464_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_AP021890.1_1552748_1553453_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_AP021890.1_1553494_1555216_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_AP021890.1_1555216_1556983_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_AP021890.1_1557105_1558071_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_AP021890.1_1558615_1559110_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1382aa|down_6|NZ_AP021890.1_1559244_1563390_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_AP021890.1_1563544_1564156_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_AP021890.1_1564166_1565510_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_AP021890.1_1565600_1566893_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_011403355.1_ASM1140335v1	NZ_AP021890	Escherichia coli strain 2017.15.01CC	3	3610891-3611955	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,16,15	17	TypeI-E	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_AP021890.1_3602764_3603526_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_AP021890.1_3603506_3604556_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_AP021890.1_3604552_3605032_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_AP021890.1_3605031_3605742_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_AP021890.1_3605760_3606072_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_AP021890.1_3606265_3606589_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_AP021890.1_3606638_3607244_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_AP021890.1_3607243_3608671_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_AP021890.1_3608672_3609581_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_AP021890.1_3609832_3610870_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_AP021890.1_3612051_3612345_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_AP021890.1_3612341_3613265_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_AP021890.1_3613261_3613912_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_AP021890.1_3613893_3614640_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_AP021890.1_3614650_3615706_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_AP021890.1_3615717_3616254_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_AP021890.1_3616250_3617813_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|51aa|down_7|NZ_AP021890.1_3620802_3620955_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_AP021890.1_3621219_3621954_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_AP021890.1_3622027_3623740_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_011403355.1_ASM1140335v1	NZ_AP021890	Escherichia coli strain 2017.15.01CC	4	3637654-3638658	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	16,16,16	16	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|121aa|down_3|NZ_AP021890.1_3641398_3641761_+	NA|424aa|up_9|NZ_AP021890.1_3626297_3627569_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_AP021890.1_3627559_3627820_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_AP021890.1_3627836_3628412_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_AP021890.1_3628559_3629420_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_AP021890.1_3629416_3630196_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_AP021890.1_3630173_3631583_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_AP021890.1_3631604_3633059_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_AP021890.1_3633128_3633914_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_AP021890.1_3634232_3635510_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_AP021890.1_3635536_3637015_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_AP021890.1_3638997_3639669_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_AP021890.1_3639841_3640444_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_AP021890.1_3640457_3641363_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_AP021890.1_3641398_3641761_+	NA	NA|433aa|down_4|NZ_AP021890.1_3641816_3643115_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_AP021890.1_3643202_3644840_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_AP021890.1_3645067_3645859_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_AP021890.1_3645929_3646265_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_AP021890.1_3646264_3646513_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_AP021890.1_3646590_3648825_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
