assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	1	351792-351887	1	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	GCAGGTCGGCGGCCTCGTCGGGCT	24	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|539aa|up_9|NZ_CP049935.1_341917_343534_+,NA|425aa|up_8|NZ_CP049935.1_343574_344849_+,NA|46aa|up_2|NZ_CP049935.1_349474_349612_+,NA|191aa|down_0|NZ_CP049935.1_352668_353241_-,NA|193aa|down_1|NZ_CP049935.1_353461_354040_+,NA|157aa|down_3|NZ_CP049935.1_355236_355707_+,NA|136aa|down_4|NZ_CP049935.1_355794_356202_+,NA|101aa|down_5|NZ_CP049935.1_356320_356623_+	NA|539aa|up_9|NZ_CP049935.1_341917_343534_+	NA	NA|425aa|up_8|NZ_CP049935.1_343574_344849_+	NA	NA|58aa|up_7|NZ_CP049935.1_344975_345149_+	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|212aa|up_6|NZ_CP049935.1_345671_346307_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|212aa|up_5|NZ_CP049935.1_346415_347051_+	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|179aa|up_4|NZ_CP049935.1_347059_347596_+	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor	NA|429aa|up_3|NZ_CP049935.1_347753_349040_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|46aa|up_2|NZ_CP049935.1_349474_349612_+	NA	NA|378aa|up_1|NZ_CP049935.1_349643_350777_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|182aa|up_0|NZ_CP049935.1_350786_351332_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|191aa|down_0|NZ_CP049935.1_352668_353241_-	NA	NA|193aa|down_1|NZ_CP049935.1_353461_354040_+	NA	NA|257aa|down_2|NZ_CP049935.1_353991_354762_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|157aa|down_3|NZ_CP049935.1_355236_355707_+	NA	NA|136aa|down_4|NZ_CP049935.1_355794_356202_+	NA	NA|101aa|down_5|NZ_CP049935.1_356320_356623_+	NA	NA|556aa|down_6|NZ_CP049935.1_357579_359247_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|144aa|down_7|NZ_CP049935.1_359272_359704_-	TIGR03668, Rv0121_F420, PPOX class probable F420-dependent enzyme, Rv0121 family	NA|517aa|down_8|NZ_CP049935.1_359837_361388_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|329aa|down_9|NZ_CP049935.1_361522_362509_+	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	2	1492453-1492550	2	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	CGCACCACCAGAAGGCCCGGTATCACCTCGACC	33	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|54aa|up_6|NZ_CP049935.1_1484421_1484583_-,NA|71aa|up_5|NZ_CP049935.1_1484579_1484792_-,NA|76aa|down_8|NZ_CP049935.1_1506359_1506587_-	NA|445aa|up_9|NZ_CP049935.1_1476020_1477355_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|292aa|up_8|NZ_CP049935.1_1477426_1478302_+	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]	NA|599aa|up_7|NZ_CP049935.1_1482624_1484421_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|54aa|up_6|NZ_CP049935.1_1484421_1484583_-	NA	NA|71aa|up_5|NZ_CP049935.1_1484579_1484792_-	NA	NA|264aa|up_4|NZ_CP049935.1_1484784_1485576_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|905aa|up_3|NZ_CP049935.1_1485659_1488374_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|144aa|up_2|NZ_CP049935.1_1488372_1488804_+	TIGR00369, Putative_esterase, uncharacterized domain 1	NA|574aa|up_1|NZ_CP049935.1_1488950_1490672_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|450aa|up_0|NZ_CP049935.1_1490683_1492033_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_0|NZ_CP049935.1_1492568_1493129_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|198aa|down_1|NZ_CP049935.1_1493287_1493881_-	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|487aa|down_2|NZ_CP049935.1_1495557_1497018_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1514aa|down_3|NZ_CP049935.1_1497010_1501552_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|301aa|down_4|NZ_CP049935.1_1501682_1502585_-	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|258aa|down_5|NZ_CP049935.1_1502619_1503393_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|413aa|down_6|NZ_CP049935.1_1504289_1505528_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|267aa|down_7|NZ_CP049935.1_1505545_1506346_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|76aa|down_8|NZ_CP049935.1_1506359_1506587_-	NA	NA|202aa|down_9|NZ_CP049935.1_1506654_1507260_-	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp)
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	3	1734693-1734777	3	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	ACCCGGCTCGCGAGCCGCCTCGG	23	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA,NA	NA|1291aa|up_9|NZ_CP049935.1_1721821_1725694_-	TIGR03607, TIGR03607, patatin-related protein	NA|171aa|up_8|NZ_CP049935.1_1725699_1726212_-	TIGR03607, TIGR03607, patatin-related protein	NA|232aa|up_7|NZ_CP049935.1_1726505_1727201_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|223aa|up_6|NZ_CP049935.1_1727268_1727937_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|224aa|up_5|NZ_CP049935.1_1727936_1728608_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|224aa|up_4|NZ_CP049935.1_1728607_1729279_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|187aa|up_3|NZ_CP049935.1_1729388_1729949_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|314aa|up_2|NZ_CP049935.1_1729967_1730909_-	PRK00089, era, GTPase Era; Reviewed	NA|156aa|up_1|NZ_CP049935.1_1732210_1732678_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|116aa|up_0|NZ_CP049935.1_1733820_1734168_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|248aa|down_0|NZ_CP049935.1_1734789_1735533_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|344aa|down_1|NZ_CP049935.1_1736715_1737747_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|295aa|down_2|NZ_CP049935.1_1737914_1738799_+	pfam11296, DUF3097, Protein of unknown function (DUF3097)	NA|103aa|down_3|NZ_CP049935.1_1738795_1739104_-	pfam04993, TfoX_N, TfoX N-terminal domain	NA|116aa|down_4|NZ_CP049935.1_1739573_1739921_+	pfam09685, DUF4870, Domain of unknown function (DUF4870)	NA|261aa|down_5|NZ_CP049935.1_1741254_1742037_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|157aa|down_6|NZ_CP049935.1_1742052_1742523_-	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|186aa|down_7|NZ_CP049935.1_1742587_1743145_+	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|612aa|down_8|NZ_CP049935.1_1744340_1746176_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|173aa|down_9|NZ_CP049935.1_1746365_1746884_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	4	1906186-1906314	4	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	CGGTTCGAGGTGATGGCGCACCCTCTCGGGG	31	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|207aa|up_1|NZ_CP049935.1_1903709_1904330_-,NA|526aa|down_3|NZ_CP049935.1_1915018_1916596_-,NA|349aa|down_9|NZ_CP049935.1_1931726_1932773_+	NA|325aa|up_9|NZ_CP049935.1_1890125_1891100_+	TIGR00271, Uncharacterized_protein_MJ0678, uncharacterized hydrophobic domain	NA|186aa|up_8|NZ_CP049935.1_1891550_1892108_-	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|250aa|up_7|NZ_CP049935.1_1892619_1893369_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|371aa|up_6|NZ_CP049935.1_1893331_1894444_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|157aa|up_5|NZ_CP049935.1_1894560_1895031_-	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional	NA|851aa|up_4|NZ_CP049935.1_1895794_1898347_+	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type	NA|321aa|up_3|NZ_CP049935.1_1898333_1899296_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|290aa|up_2|NZ_CP049935.1_1902858_1903728_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|207aa|up_1|NZ_CP049935.1_1903709_1904330_-	NA	NA|149aa|up_0|NZ_CP049935.1_1904326_1904773_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)	NA|488aa|down_0|NZ_CP049935.1_1910832_1912296_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|321aa|down_1|NZ_CP049935.1_1912334_1913297_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|326aa|down_2|NZ_CP049935.1_1914044_1915022_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|526aa|down_3|NZ_CP049935.1_1915018_1916596_-	NA	NA|1266aa|down_4|NZ_CP049935.1_1917208_1921006_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|614aa|down_5|NZ_CP049935.1_1921058_1922900_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|252aa|down_6|NZ_CP049935.1_1927792_1928548_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|302aa|down_7|NZ_CP049935.1_1928738_1929644_+	pfam18741, MTES_1575, REase_MTES_1575	NA|382aa|down_8|NZ_CP049935.1_1929815_1930961_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|349aa|down_9|NZ_CP049935.1_1931726_1932773_+	NA
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	5	2012581-2012669	5	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	GTCGAGGTGAAAACGCACCACCAG	24	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|151aa|up_8|NZ_CP049935.1_2000633_2001086_+,NA|53aa|up_1|NZ_CP049935.1_2009192_2009351_-,NA	NA|964aa|up_9|NZ_CP049935.1_1993824_1996716_+	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|151aa|up_8|NZ_CP049935.1_2000633_2001086_+	NA	NA|269aa|up_7|NZ_CP049935.1_2002313_2003120_-	pfam06271, RDD, RDD family	NA|280aa|up_6|NZ_CP049935.1_2003200_2004040_+	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)	NA|495aa|up_5|NZ_CP049935.1_2004105_2005590_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|413aa|up_4|NZ_CP049935.1_2005668_2006907_-	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|164aa|up_3|NZ_CP049935.1_2007014_2007506_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|567aa|up_2|NZ_CP049935.1_2007495_2009196_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|53aa|up_1|NZ_CP049935.1_2009192_2009351_-	NA	NA|317aa|up_0|NZ_CP049935.1_2011316_2012267_-	cd04275, ZnMc_pappalysin_like, Zinc-dependent metalloprotease, pappalysin_like subfamily	NA|103aa|down_0|NZ_CP049935.1_2012711_2013020_-	pfam11238, DUF3039, Protein of unknown function (DUF3039)	NA|187aa|down_1|NZ_CP049935.1_2013052_2013613_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|276aa|down_2|NZ_CP049935.1_2014942_2015770_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|210aa|down_3|NZ_CP049935.1_2017889_2018519_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|205aa|down_4|NZ_CP049935.1_2018515_2019130_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|891aa|down_5|NZ_CP049935.1_2019231_2021904_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|1140aa|down_6|NZ_CP049935.1_2023247_2026667_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|58aa|down_7|NZ_CP049935.1_2026811_2026985_+	pfam05532, CsbD, CsbD-like	NA|164aa|down_8|NZ_CP049935.1_2029039_2029531_-	pfam01668, SmpB, SmpB protein	NA|445aa|down_9|NZ_CP049935.1_2029588_2030923_-	pfam01551, Peptidase_M23, Peptidase family M23
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	6	2467810-2467991	1	PILER-CR	no	cas3	casR,WYL,cas4,csa3,DEDDh,cas3	Unclear	CCTCCCGACTCCCCTCGGGTGCGCTGGCGCGCCCCCGACGGGAA	44	0	0	NA	NA	NA	2	2	Unclear	casR,WYL,cas4,csa3,DEDDh,cas3	NA|114aa|up_1|NZ_CP049935.1_2466398_2466740_-,NA|310aa|down_0|NZ_CP049935.1_2468086_2469016_-,NA|166aa|down_9|NZ_CP049935.1_2478507_2479005_-	NA|213aa|up_9|NZ_CP049935.1_2455237_2455876_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|537aa|up_8|NZ_CP049935.1_2455886_2457497_+	pfam14262, Cthe_2159, Carbohydrate-binding domain-containing protein Cthe_2159	NA|405aa|up_7|NZ_CP049935.1_2457640_2458855_+	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|676aa|up_6|NZ_CP049935.1_2458866_2460894_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|160aa|up_5|NZ_CP049935.1_2460952_2461432_-	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|459aa|up_4|NZ_CP049935.1_2461477_2462854_-	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|131aa|up_3|NZ_CP049935.1_2464489_2464882_-	cd06154, YjgF_YER057c_UK114_like_6, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|408aa|up_2|NZ_CP049935.1_2465087_2466311_+	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|114aa|up_1|NZ_CP049935.1_2466398_2466740_-	NA	NA|277aa|up_0|NZ_CP049935.1_2466736_2467567_-	pfam12811, BaxI_1, Bax inhibitor 1 like	NA|310aa|down_0|NZ_CP049935.1_2468086_2469016_-	NA	NA|111aa|down_1|NZ_CP049935.1_2469069_2469402_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|231aa|down_2|NZ_CP049935.1_2469901_2470594_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|363aa|down_3|NZ_CP049935.1_2470769_2471858_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|226aa|down_4|NZ_CP049935.1_2472243_2472921_-	pfam04977, DivIC, Septum formation initiator	NA|430aa|down_5|NZ_CP049935.1_2472947_2474237_-	PRK00077, eno, enolase; Provisional	NA|288aa|down_6|NZ_CP049935.1_2474279_2475143_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|313aa|down_7|NZ_CP049935.1_2475270_2476209_-	pfam04227, Indigoidine_A, Indigoidine synthase A like protein	NA|315aa|down_8|NZ_CP049935.1_2477566_2478511_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|166aa|down_9|NZ_CP049935.1_2478507_2479005_-	NA
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	7	2746040-2746130	6	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	GTGGTGCGCTGTCACCTCGACCCGGA	26	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|69aa|up_6|NZ_CP049935.1_2740436_2740643_+,NA|93aa|up_3|NZ_CP049935.1_2742693_2742972_-,NA|172aa|up_1|NZ_CP049935.1_2743916_2744432_-,NA|185aa|down_4|NZ_CP049935.1_2753016_2753571_-	NA|241aa|up_9|NZ_CP049935.1_2737111_2737834_-	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|470aa|up_8|NZ_CP049935.1_2737830_2739240_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|339aa|up_7|NZ_CP049935.1_2739236_2740253_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|69aa|up_6|NZ_CP049935.1_2740436_2740643_+	NA	NA|189aa|up_5|NZ_CP049935.1_2740642_2741209_+	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins	NA|400aa|up_4|NZ_CP049935.1_2741340_2742540_-	pfam03861, ANTAR, ANTAR domain	NA|93aa|up_3|NZ_CP049935.1_2742693_2742972_-	NA	NA|275aa|up_2|NZ_CP049935.1_2742968_2743793_-	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|172aa|up_1|NZ_CP049935.1_2743916_2744432_-	NA	NA|261aa|up_0|NZ_CP049935.1_2744625_2745408_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|399aa|down_0|NZ_CP049935.1_2747771_2748968_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|491aa|down_1|NZ_CP049935.1_2749058_2750531_-	pfam18105, PGM1_C, PGM1 C-terminal domain	NA|268aa|down_2|NZ_CP049935.1_2750604_2751408_-	pfam04234, CopC, CopC domain	NA|448aa|down_3|NZ_CP049935.1_2751412_2752756_-	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|185aa|down_4|NZ_CP049935.1_2753016_2753571_-	NA	NA|332aa|down_5|NZ_CP049935.1_2753792_2754788_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|286aa|down_6|NZ_CP049935.1_2754830_2755688_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|216aa|down_7|NZ_CP049935.1_2755798_2756446_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|135aa|down_8|NZ_CP049935.1_2756429_2756834_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|250aa|down_9|NZ_CP049935.1_2756878_2757628_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	8	2779349-2779424	7	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	TCCTGGTGGCGGAACCGGGGCTCCC	25	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|97aa|up_9|NZ_CP049935.1_2771763_2772054_-,NA	NA|97aa|up_9|NZ_CP049935.1_2771763_2772054_-	NA	NA|695aa|up_8|NZ_CP049935.1_2772055_2774140_-	pfam00771, FHIPEP, FHIPEP family	NA|172aa|up_7|NZ_CP049935.1_2774311_2774827_-	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family	NA|216aa|up_6|NZ_CP049935.1_2774772_2775420_-	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family	NA|260aa|up_5|NZ_CP049935.1_2775427_2776207_-	pfam01311, Bac_export_1, Bacterial export proteins, family 1	NA|90aa|up_4|NZ_CP049935.1_2776206_2776476_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|270aa|up_3|NZ_CP049935.1_2776486_2777296_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|206aa|up_2|NZ_CP049935.1_2777282_2777900_-	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|147aa|up_1|NZ_CP049935.1_2777899_2778340_-	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|292aa|up_0|NZ_CP049935.1_2778362_2779238_-	COG1868, FliM, Flagellar motor switch protein [Cell motility and secretion]	NA|154aa|down_0|NZ_CP049935.1_2779445_2779907_-	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|85aa|down_1|NZ_CP049935.1_2779903_2780158_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|256aa|down_2|NZ_CP049935.1_2780804_2781572_-	PRK08124, PRK08124, flagellar motor protein MotA; Validated	NA|90aa|down_3|NZ_CP049935.1_2781573_2781843_-	pfam06289, FlbD, Flagellar protein (FlbD)	NA|409aa|down_4|NZ_CP049935.1_2782067_2783294_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|144aa|down_5|NZ_CP049935.1_2783357_2783789_-	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|391aa|down_6|NZ_CP049935.1_2783793_2784966_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|342aa|down_7|NZ_CP049935.1_2784965_2785991_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|146aa|down_8|NZ_CP049935.1_2785987_2786425_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|434aa|down_9|NZ_CP049935.1_2786421_2787723_-	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	9	3087486-3087597	8	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	CCGACGAGGACGACCCCTGGGACGAGCC	28	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|127aa|up_8|NZ_CP049935.1_3074869_3075250_+,NA|167aa|up_5|NZ_CP049935.1_3078361_3078862_+,NA|485aa|down_8|NZ_CP049935.1_3095811_3097266_-	NA|129aa|up_9|NZ_CP049935.1_3074042_3074429_-	cd02210, cupin_BLR2406-like, Bradyrhizobium japonicum BLR2406 and related proteins, cupin domain	NA|127aa|up_8|NZ_CP049935.1_3074869_3075250_+	NA	NA|561aa|up_7|NZ_CP049935.1_3076083_3077766_+	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	NA|201aa|up_6|NZ_CP049935.1_3077762_3078365_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|167aa|up_5|NZ_CP049935.1_3078361_3078862_+	NA	NA|850aa|up_4|NZ_CP049935.1_3078870_3081420_+	pfam12770, CHAT, CHAT domain	NA|199aa|up_3|NZ_CP049935.1_3081412_3082009_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|310aa|up_2|NZ_CP049935.1_3082011_3082941_-	TIGR01136, Cysteine_synthase, cysteine synthase	NA|396aa|up_1|NZ_CP049935.1_3083096_3084284_-	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|116aa|up_0|NZ_CP049935.1_3084372_3084720_-	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|down_0|NZ_CP049935.1_3089064_3089985_-	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|260aa|down_1|NZ_CP049935.1_3090115_3090895_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|216aa|down_2|NZ_CP049935.1_3090891_3091539_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|380aa|down_3|NZ_CP049935.1_3091540_3092680_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|241aa|down_4|NZ_CP049935.1_3092745_3093468_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|192aa|down_5|NZ_CP049935.1_3093650_3094226_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|368aa|down_6|NZ_CP049935.1_3094487_3095591_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|66aa|down_7|NZ_CP049935.1_3095590_3095788_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|485aa|down_8|NZ_CP049935.1_3095811_3097266_-	NA	NA|126aa|down_9|NZ_CP049935.1_3097381_3097759_-	pfam02467, Whib, Transcription factor WhiB
GCF_011383005.1_ASM1138300v1	NZ_CP049935	Phycicoccus sp. HDW14 chromosome, complete genome	10	3148538-3148629	9	CRISPRCasFinder	no		casR,WYL,cas4,csa3,DEDDh,cas3	Orphan	CCACGAGAGGGCCCGGCATCACCTCGA	27	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas4,csa3,DEDDh,cas3	NA|82aa|up_0|NZ_CP049935.1_3148254_3148500_+,NA|162aa|down_0|NZ_CP049935.1_3149464_3149950_+,NA|318aa|down_5|NZ_CP049935.1_3152741_3153695_-,NA|251aa|down_9|NZ_CP049935.1_3158422_3159175_+	NA|344aa|up_9|NZ_CP049935.1_3139844_3140876_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|533aa|up_8|NZ_CP049935.1_3140895_3142494_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|549aa|up_7|NZ_CP049935.1_3142490_3144137_+	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit	NA|166aa|up_6|NZ_CP049935.1_3144084_3144582_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|281aa|up_5|NZ_CP049935.1_3144624_3145467_+	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|118aa|up_4|NZ_CP049935.1_3145463_3145817_+	pfam09424, YqeY, Yqey-like protein	NA|167aa|up_3|NZ_CP049935.1_3145824_3146325_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|244aa|up_2|NZ_CP049935.1_3146447_3147179_+	COG2013, COG2013, Uncharacterized conserved protein [Function unknown]	NA|338aa|up_1|NZ_CP049935.1_3147236_3148250_+	PRK06256, PRK06256, biotin synthase; Validated	NA|82aa|up_0|NZ_CP049935.1_3148254_3148500_+	NA	NA|162aa|down_0|NZ_CP049935.1_3149464_3149950_+	NA	NA|439aa|down_1|NZ_CP049935.1_3150058_3151375_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|113aa|down_2|NZ_CP049935.1_3151365_3151704_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|139aa|down_3|NZ_CP049935.1_3151897_3152314_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|125aa|down_4|NZ_CP049935.1_3152370_3152745_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|318aa|down_5|NZ_CP049935.1_3152741_3153695_-	NA	NA|230aa|down_6|NZ_CP049935.1_3155065_3155755_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|172aa|down_7|NZ_CP049935.1_3155865_3156381_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|129aa|down_8|NZ_CP049935.1_3157967_3158354_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|251aa|down_9|NZ_CP049935.1_3158422_3159175_+	NA
