assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011330935.1_ASM1133093v1	NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	1	2502781-2502904	1	CRISPRCasFinder	no	DEDDh	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	NA,NA|30aa|down_7|NZ_CP049077.1_2511800_2511890_+	NA|471aa|up_9|NZ_CP049077.1_2492233_2493646_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP049077.1_2494202_2494412_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP049077.1_2494867_2495494_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP049077.1_2495514_2497617_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP049077.1_2497629_2498268_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP049077.1_2498331_2499000_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP049077.1_2498996_2499782_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP049077.1_2499785_2500598_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP049077.1_2500609_2502214_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP049077.1_2502339_2502645_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP049077.1_2503218_2504475_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP049077.1_2504515_2505889_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP049077.1_2506103_2506745_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP049077.1_2506784_2507933_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP049077.1_2508223_2509435_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP049077.1_2509547_2510480_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP049077.1_2510476_2511502_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP049077.1_2511800_2511890_+	NA	NA|390aa|down_8|NZ_CP049077.1_2512055_2513225_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP049077.1_2513370_2513952_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011330935.1_ASM1133093v1	NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	2	3048674-3048787	1	PILER-CR	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	NA|34aa|up_6|NZ_CP049077.1_3038923_3039025_-,NA|94aa|down_9|NZ_CP049077.1_3053852_3054134_+	NA|97aa|up_9|NZ_CP049077.1_3038018_3038309_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_8|NZ_CP049077.1_3038301_3038472_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_7|NZ_CP049077.1_3038471_3038927_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_6|NZ_CP049077.1_3038923_3039025_-	NA	NA|344aa|up_5|NZ_CP049077.1_3039374_3040406_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|538aa|up_4|NZ_CP049077.1_3040432_3042046_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|117aa|up_3|NZ_CP049077.1_3042076_3042427_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|142aa|up_2|NZ_CP049077.1_3042423_3042849_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1422aa|up_1|NZ_CP049077.1_3042994_3047260_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|234aa|up_0|NZ_CP049077.1_3047509_3048211_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP049077.1_3049223_3049763_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP049077.1_3049832_3050063_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP049077.1_3050167_3050857_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP049077.1_3051452_3051659_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP049077.1_3051734_3052031_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP049077.1_3052036_3052822_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP049077.1_3052818_3053499_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP049077.1_3053495_3053678_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP049077.1_3053650_3053842_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP049077.1_3053852_3054134_+	NA
GCF_011330935.1_ASM1133093v1	NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	3	3181081-3181172	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	NA|70aa|up_9|NZ_CP049077.1_3170331_3170541_-,NA	NA|70aa|up_9|NZ_CP049077.1_3170331_3170541_-	NA	NA|1321aa|up_8|NZ_CP049077.1_3170595_3174558_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP049077.1_3174597_3175236_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP049077.1_3175523_3176615_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP049077.1_3176614_3177307_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP049077.1_3177318_3177705_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP049077.1_3177712_3178513_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP049077.1_3178522_3179113_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP049077.1_3179123_3179618_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP049077.1_3179638_3180967_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP049077.1_3181595_3182192_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP049077.1_3182212_3182440_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP049077.1_3182477_3183719_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP049077.1_3184253_3185174_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP049077.1_3185173_3185479_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP049077.1_3185733_3186333_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP049077.1_3186329_3188876_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP049077.1_3188875_3190048_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP049077.1_3190177_3190870_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP049077.1_3190842_3191871_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011330935.1_ASM1133093v1	NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	4	3378524-3378606	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	NA,NA	NA|431aa|up_9|NZ_CP049077.1_3363521_3364814_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP049077.1_3364904_3366248_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP049077.1_3366258_3366870_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP049077.1_3367028_3371135_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP049077.1_3371269_3371764_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP049077.1_3372307_3373273_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP049077.1_3373395_3375162_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP049077.1_3375162_3376884_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP049077.1_3376925_3377630_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP049077.1_3377914_3378133_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP049077.1_3378817_3381094_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP049077.1_3381124_3381445_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP049077.1_3381767_3381992_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP049077.1_3382064_3384011_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP049077.1_3384007_3385123_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP049077.1_3385279_3386230_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP049077.1_3386226_3387885_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP049077.1_3388309_3389005_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP049077.1_3389419_3390319_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP049077.1_3390462_3392115_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_011330935.1_ASM1133093v1	NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	5	4262622-4262754	2	PILER-CR	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG,WYL	NA,NA	NA|95aa|up_9|NZ_CP049077.1_4254023_4254308_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP049077.1_4254310_4254544_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP049077.1_4254629_4255109_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP049077.1_4255300_4257163_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP049077.1_4257155_4257686_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP049077.1_4257793_4259125_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP049077.1_4259183_4259471_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP049077.1_4259467_4260754_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP049077.1_4260804_4261746_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP049077.1_4261760_4262531_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP049077.1_4263003_4264518_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP049077.1_4264548_4265691_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP049077.1_4265819_4267037_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP049077.1_4267109_4268663_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP049077.1_4268771_4269557_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP049077.1_4269562_4270153_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP049077.1_4270271_4270667_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP049077.1_4270927_4274149_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP049077.1_4274166_4275315_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP049077.1_4275770_4276592_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
