assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	1	206656-206764	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3	Orphan	CGCTGCGCCAGCTTGCTGCCCCCCAGGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA,NA	NA|365aa|up_9|NZ_CP049918.1_198018_199113_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|291aa|up_8|NZ_CP049918.1_199203_200076_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|280aa|up_7|NZ_CP049918.1_200097_200937_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|508aa|up_6|NZ_CP049918.1_201012_202536_+	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|367aa|up_5|NZ_CP049918.1_202632_203733_-	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|141aa|up_4|NZ_CP049918.1_203749_204172_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|71aa|up_3|NZ_CP049918.1_204194_204407_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_2|NZ_CP049918.1_204453_205374_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|250aa|up_1|NZ_CP049918.1_205556_206306_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|110aa|up_0|NZ_CP049918.1_206308_206638_+	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|453aa|down_0|NZ_CP049918.1_206995_208354_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|128aa|down_1|NZ_CP049918.1_208365_208749_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|267aa|down_2|NZ_CP049918.1_208810_209611_+	pfam07264, EI24, Etoposide-induced protein 2	NA|271aa|down_3|NZ_CP049918.1_209664_210477_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|283aa|down_4|NZ_CP049918.1_210635_211484_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|326aa|down_5|NZ_CP049918.1_211547_212525_-	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|193aa|down_6|NZ_CP049918.1_212911_213490_+	TIGR01841, hypothetical_protein, phasin family protein	NA|350aa|down_7|NZ_CP049918.1_213637_214687_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|242aa|down_8|NZ_CP049918.1_214727_215453_-	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|255aa|down_9|NZ_CP049918.1_215489_216254_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	2	1018991-1019114	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3	Orphan	TTTTTTTGCCGCCGGGCCGTCCCAAGGCAAAAAGGCCCCCT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA,NA|88aa|down_0|NZ_CP049918.1_1019302_1019566_+,NA|439aa|down_1|NZ_CP049918.1_1019562_1020879_+,NA|208aa|down_2|NZ_CP049918.1_1020875_1021499_+	NA|294aa|up_9|NZ_CP049918.1_1009906_1010788_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|232aa|up_8|NZ_CP049918.1_1011064_1011760_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|240aa|up_7|NZ_CP049918.1_1011918_1012638_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|315aa|up_6|NZ_CP049918.1_1012756_1013701_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|263aa|up_5|NZ_CP049918.1_1013733_1014522_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|395aa|up_4|NZ_CP049918.1_1014559_1015744_+	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|532aa|up_3|NZ_CP049918.1_1015747_1017343_+	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|179aa|up_2|NZ_CP049918.1_1017371_1017908_+	PRK01250, PRK01250, inorganic diphosphatase	NA|232aa|up_1|NZ_CP049918.1_1018091_1018787_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|44aa|up_0|NZ_CP049918.1_1018813_1018945_+	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|88aa|down_0|NZ_CP049918.1_1019302_1019566_+	NA	NA|439aa|down_1|NZ_CP049918.1_1019562_1020879_+	NA	NA|208aa|down_2|NZ_CP049918.1_1020875_1021499_+	NA	NA|223aa|down_3|NZ_CP049918.1_1021495_1022164_+	PRK14852, PRK14852, hypothetical protein; Provisional	NA|471aa|down_4|NZ_CP049918.1_1022989_1024402_+	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|539aa|down_5|NZ_CP049918.1_1024398_1026015_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|282aa|down_6|NZ_CP049918.1_1026011_1026857_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|299aa|down_7|NZ_CP049918.1_1026867_1027764_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|236aa|down_8|NZ_CP049918.1_1027763_1028471_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|329aa|down_9|NZ_CP049918.1_1028829_1029816_-	PRK05231, PRK05231, homoserine kinase; Provisional
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	3	1929253-1929411	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3	Orphan	CACCGGCCGGGGCGGAAGCGGCTGAGCCGTTTCGACCTTCGGCCGCGGCAC	51	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA,NA	NA|164aa|up_9|NZ_CP049918.1_1916272_1916764_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|433aa|up_8|NZ_CP049918.1_1916756_1918055_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|325aa|up_7|NZ_CP049918.1_1918318_1919293_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|167aa|up_6|NZ_CP049918.1_1919299_1919800_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|434aa|up_5|NZ_CP049918.1_1919792_1921094_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|584aa|up_4|NZ_CP049918.1_1921119_1922871_-	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB	NA|366aa|up_3|NZ_CP049918.1_1922863_1923961_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|874aa|up_2|NZ_CP049918.1_1923974_1926596_-	pfam00577, Usher, Outer membrane usher protein	NA|245aa|up_1|NZ_CP049918.1_1926658_1927393_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|202aa|up_0|NZ_CP049918.1_1927642_1928248_-	pfam16970, FimA, Type-1 fimbrial protein, A	NA|210aa|down_0|NZ_CP049918.1_1940022_1940652_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1239aa|down_1|NZ_CP049918.1_1940660_1944377_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|292aa|down_2|NZ_CP049918.1_1944423_1945299_-	pfam00563, EAL, EAL domain	NA|265aa|down_3|NZ_CP049918.1_1945432_1946227_-	PRK05463, PRK05463, putative hydro-lyase	NA|450aa|down_4|NZ_CP049918.1_1946284_1947634_-	PRK07056, PRK07056, amidase; Provisional	NA|229aa|down_5|NZ_CP049918.1_1947694_1948381_-	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|428aa|down_6|NZ_CP049918.1_1948436_1949720_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|207aa|down_7|NZ_CP049918.1_1949716_1950337_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|350aa|down_8|NZ_CP049918.1_1950446_1951496_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|303aa|down_9|NZ_CP049918.1_1951838_1952747_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	4	2168212-2168308	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3	Orphan	GTGCCTGTCCCGGCGGGGACAGGCACCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA|122aa|up_2|NZ_CP049918.1_2165362_2165728_-,NA	NA|526aa|up_9|NZ_CP049918.1_2156412_2157990_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|251aa|up_8|NZ_CP049918.1_2157986_2158739_-	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system	NA|452aa|up_7|NZ_CP049918.1_2158916_2160272_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|545aa|up_6|NZ_CP049918.1_2160268_2161903_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|277aa|up_5|NZ_CP049918.1_2161895_2162726_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_4|NZ_CP049918.1_2162743_2163688_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|525aa|up_3|NZ_CP049918.1_2163740_2165315_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|122aa|up_2|NZ_CP049918.1_2165362_2165728_-	NA	NA|459aa|up_1|NZ_CP049918.1_2165714_2167091_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|317aa|up_0|NZ_CP049918.1_2167187_2168138_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|446aa|down_0|NZ_CP049918.1_2168407_2169745_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|419aa|down_1|NZ_CP049918.1_2169749_2171006_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|349aa|down_2|NZ_CP049918.1_2171201_2172248_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|123aa|down_3|NZ_CP049918.1_2172305_2172674_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|291aa|down_4|NZ_CP049918.1_2172804_2173677_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|301aa|down_5|NZ_CP049918.1_2173753_2174656_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|352aa|down_6|NZ_CP049918.1_2174660_2175716_-	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase	NA|406aa|down_7|NZ_CP049918.1_2175712_2176930_-	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|341aa|down_8|NZ_CP049918.1_2176930_2177953_-	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|309aa|down_9|NZ_CP049918.1_2178202_2179129_-	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	5	2753294-2753380	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3	Orphan	CTGTCCCCGCGGGGACAGGCACACT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA|106aa|up_5|NZ_CP049918.1_2747051_2747369_+,NA	NA|201aa|up_9|NZ_CP049918.1_2741879_2742482_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|159aa|up_8|NZ_CP049918.1_2742836_2743313_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|546aa|up_7|NZ_CP049918.1_2743936_2745574_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|438aa|up_6|NZ_CP049918.1_2745604_2746918_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|106aa|up_5|NZ_CP049918.1_2747051_2747369_+	NA	NA|441aa|up_4|NZ_CP049918.1_2747469_2748792_+	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|570aa|up_3|NZ_CP049918.1_2748868_2750578_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_CP049918.1_2750574_2751660_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|300aa|up_1|NZ_CP049918.1_2751707_2752607_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|up_0|NZ_CP049918.1_2752617_2753262_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|255aa|down_0|NZ_CP049918.1_2753442_2754207_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|1081aa|down_1|NZ_CP049918.1_2754357_2757600_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|385aa|down_2|NZ_CP049918.1_2757610_2758765_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|321aa|down_3|NZ_CP049918.1_2758991_2759954_+	PRK05269, PRK05269, transaldolase B; Provisional	NA|265aa|down_4|NZ_CP049918.1_2759995_2760790_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|270aa|down_5|NZ_CP049918.1_2760793_2761603_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|347aa|down_6|NZ_CP049918.1_2761595_2762636_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|417aa|down_7|NZ_CP049918.1_2762741_2763992_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|203aa|down_8|NZ_CP049918.1_2764066_2764675_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|109aa|down_9|NZ_CP049918.1_2764724_2765051_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	6	3282177-3282262	6	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,csa3	Type I-A	CTGTCCCCGCGGGGACAGGCACAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA,NA	NA|333aa|up_9|NZ_CP049918.1_3273475_3274474_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|167aa|up_8|NZ_CP049918.1_3274531_3275032_-	PRK00202, nusB, transcription antitermination factor NusB	NA|176aa|up_7|NZ_CP049918.1_3275003_3275531_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|392aa|up_6|NZ_CP049918.1_3275544_3276720_-	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|266aa|up_5|NZ_CP049918.1_3276865_3277663_+	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|276aa|up_4|NZ_CP049918.1_3277668_3278496_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|336aa|up_3|NZ_CP049918.1_3278644_3279652_+	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|257aa|up_2|NZ_CP049918.1_3279654_3280425_+	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|297aa|up_1|NZ_CP049918.1_3280421_3281312_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|274aa|up_0|NZ_CP049918.1_3281308_3282130_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|533aa|down_0|NZ_CP049918.1_3282368_3283967_+	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|393aa|down_1|NZ_CP049918.1_3284013_3285192_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|207aa|down_2|NZ_CP049918.1_3285267_3285888_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|170aa|down_3|NZ_CP049918.1_3285908_3286418_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|84aa|down_4|NZ_CP049918.1_3286472_3286724_+	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|406aa|down_5|NZ_CP049918.1_3286720_3287938_+	pfam03594, BenE, Benzoate membrane transport protein	NA|129aa|down_6|NZ_CP049918.1_3287945_3288332_-	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|840aa|down_7|NZ_CP049918.1_3288328_3290848_-	PRK10833, PRK10833, putative assembly protein; Provisional	csa3|113aa|down_8|NZ_CP049918.1_3291276_3291615_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|169aa|down_9|NZ_CP049918.1_3291611_3292118_+	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	7	4290908-4291044	1	PILER-CR	no		cas3,DinG,DEDDh,csa3	Orphan	ATGTTTCACGTGAAACAA	18	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3	NA,NA	NA|233aa|up_9|NZ_CP049918.1_4280449_4281148_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_8|NZ_CP049918.1_4281150_4281582_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|178aa|up_7|NZ_CP049918.1_4281645_4282179_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|127aa|up_6|NZ_CP049918.1_4282188_4282569_-	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|397aa|up_5|NZ_CP049918.1_4282807_4283998_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|334aa|up_4|NZ_CP049918.1_4284593_4285595_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|306aa|up_3|NZ_CP049918.1_4285587_4286505_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|269aa|up_2|NZ_CP049918.1_4286548_4287355_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|266aa|up_1|NZ_CP049918.1_4287361_4288159_-	pfam13614, AAA_31, AAA domain	NA|231aa|up_0|NZ_CP049918.1_4288155_4288848_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|69aa|down_0|NZ_CP049918.1_4292553_4292760_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|389aa|down_1|NZ_CP049918.1_4293159_4294326_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|508aa|down_2|NZ_CP049918.1_4294401_4295925_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|146aa|down_3|NZ_CP049918.1_4295921_4296359_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|335aa|down_4|NZ_CP049918.1_4296463_4297468_-	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|459aa|down_5|NZ_CP049918.1_4297588_4298965_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|227aa|down_6|NZ_CP049918.1_4299038_4299719_-	PRK15479, PRK15479, transcriptional regulator TctD	NA|425aa|down_7|NZ_CP049918.1_4300276_4301551_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|451aa|down_8|NZ_CP049918.1_4301495_4302848_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|529aa|down_9|NZ_CP049918.1_4302964_4304551_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCF_011305335.1_ASM1130533v1	NZ_CP049918	Bordetella bronchiseptica strain KVNON-570 chromosome, complete genome	8	5080159-5080252	7	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,csa3	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3	NA,NA	NA|540aa|up_9|NZ_CP049918.1_5071528_5073148_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|132aa|up_8|NZ_CP049918.1_5073107_5073503_-	pfam04138, GtrA, GtrA-like protein	NA|334aa|up_7|NZ_CP049918.1_5073437_5074439_+	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|152aa|up_6|NZ_CP049918.1_5074435_5074891_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|308aa|up_5|NZ_CP049918.1_5074896_5075820_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|220aa|up_4|NZ_CP049918.1_5075909_5076569_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|305aa|up_3|NZ_CP049918.1_5076565_5077480_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|482aa|up_2|NZ_CP049918.1_5077623_5079069_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP049918.1_5079168_5079513_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_CP049918.1_5079601_5080072_+	pfam00582, Usp, Universal stress protein family	NA|708aa|down_0|NZ_CP049918.1_5080482_5082606_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|173aa|down_1|NZ_CP049918.1_5082602_5083121_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_2|NZ_CP049918.1_5083231_5083987_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|411aa|down_3|NZ_CP049918.1_5084182_5085415_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_4|NZ_CP049918.1_5085407_5086193_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_5|NZ_CP049918.1_5086259_5087231_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|326aa|down_6|NZ_CP049918.1_5087241_5088219_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|391aa|down_7|NZ_CP049918.1_5088344_5089517_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|343aa|down_8|NZ_CP049918.1_5089543_5090572_+	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|398aa|down_9|NZ_CP049918.1_5090637_5091831_+	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase
