assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	1	64829-64935	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	TCCCGGTGGTCGAGCAGCGAGCGCCAGCGAGCGTCGTCGA	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|267aa|up_2|NZ_CP049867.1_61513_62314_+,NA|193aa|down_9|NZ_CP049867.1_76895_77474_+	NA|562aa|up_9|NZ_CP049867.1_54319_56005_+	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|196aa|up_8|NZ_CP049867.1_56023_56611_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|116aa|up_7|NZ_CP049867.1_56728_57076_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|96aa|up_6|NZ_CP049867.1_58071_58359_+	pfam10724, DUF2516, Protein of unknown function (DUF2516)	NA|210aa|up_5|NZ_CP049867.1_58757_59387_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|328aa|up_4|NZ_CP049867.1_59457_60441_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|288aa|up_3|NZ_CP049867.1_60437_61301_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|267aa|up_2|NZ_CP049867.1_61513_62314_+	NA	NA|591aa|up_1|NZ_CP049867.1_62318_64091_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|206aa|up_0|NZ_CP049867.1_64156_64774_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|97aa|down_0|NZ_CP049867.1_65457_65748_-	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1	NA|418aa|down_1|NZ_CP049867.1_65992_67246_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|149aa|down_2|NZ_CP049867.1_67313_67760_+	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|207aa|down_3|NZ_CP049867.1_68214_68835_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|444aa|down_4|NZ_CP049867.1_69080_70412_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|119aa|down_5|NZ_CP049867.1_70487_70844_+	cd02213, cupin_PMI_typeII_C, Phosphomannose isomerase type II, C-terminal cupin domain	NA|1198aa|down_6|NZ_CP049867.1_70998_74592_-	cd07302, CHD, cyclase homology domain	NA|149aa|down_7|NZ_CP049867.1_75021_75468_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|down_8|NZ_CP049867.1_75586_76798_+	TIGR02819, formaldehyde_dehydrogenase_glutathione-independent, formaldehyde dehydrogenase, glutathione-independent	NA|193aa|down_9|NZ_CP049867.1_76895_77474_+	NA
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	2	103640-103725	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	TTCACTGGGTACCTAGTGAAACCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA,NA|200aa|down_5|NZ_CP049867.1_108167_108767_-	NA|458aa|up_9|NZ_CP049867.1_92118_93492_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|255aa|up_8|NZ_CP049867.1_93608_94373_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|95aa|up_7|NZ_CP049867.1_95124_95409_+	pfam18741, MTES_1575, REase_MTES_1575	NA|230aa|up_6|NZ_CP049867.1_95457_96147_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|283aa|up_5|NZ_CP049867.1_96217_97066_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|256aa|up_4|NZ_CP049867.1_97276_98044_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|225aa|up_3|NZ_CP049867.1_98040_98715_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|980aa|up_2|NZ_CP049867.1_98852_101792_+	cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|444aa|up_1|NZ_CP049867.1_101754_103086_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|169aa|up_0|NZ_CP049867.1_103120_103627_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|226aa|down_0|NZ_CP049867.1_103738_104416_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|395aa|down_1|NZ_CP049867.1_104412_105597_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|219aa|down_2|NZ_CP049867.1_105753_106410_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|274aa|down_3|NZ_CP049867.1_106475_107297_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|251aa|down_4|NZ_CP049867.1_107410_108163_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|200aa|down_5|NZ_CP049867.1_108167_108767_-	NA	NA|239aa|down_6|NZ_CP049867.1_108816_109533_-	cd13956, PT_UbiA, UbiA family of prenyltransferases (PTases)	NA|162aa|down_7|NZ_CP049867.1_109713_110199_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|167aa|down_8|NZ_CP049867.1_110382_110883_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|555aa|down_9|NZ_CP049867.1_110966_112631_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	3	110283-110367	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGGTTTCACTAGGTACCTAGTGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|200aa|up_2|NZ_CP049867.1_108167_108767_-,NA	NA|444aa|up_9|NZ_CP049867.1_101754_103086_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|169aa|up_8|NZ_CP049867.1_103120_103627_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|226aa|up_7|NZ_CP049867.1_103738_104416_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|395aa|up_6|NZ_CP049867.1_104412_105597_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|219aa|up_5|NZ_CP049867.1_105753_106410_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|274aa|up_4|NZ_CP049867.1_106475_107297_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|251aa|up_3|NZ_CP049867.1_107410_108163_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|200aa|up_2|NZ_CP049867.1_108167_108767_-	NA	NA|239aa|up_1|NZ_CP049867.1_108816_109533_-	cd13956, PT_UbiA, UbiA family of prenyltransferases (PTases)	NA|162aa|up_0|NZ_CP049867.1_109713_110199_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|167aa|down_0|NZ_CP049867.1_110382_110883_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|555aa|down_1|NZ_CP049867.1_110966_112631_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|447aa|down_2|NZ_CP049867.1_112634_113975_-	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|469aa|down_3|NZ_CP049867.1_114069_115476_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|318aa|down_4|NZ_CP049867.1_115540_116494_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|313aa|down_5|NZ_CP049867.1_116677_117616_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|464aa|down_6|NZ_CP049867.1_117817_119209_-	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|498aa|down_7|NZ_CP049867.1_119283_120777_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|382aa|down_8|NZ_CP049867.1_120818_121964_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|256aa|down_9|NZ_CP049867.1_122076_122844_-	cd01144, BtuF, Cobalamin binding protein BtuF
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	4	178570-178654	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	TCACTGGGTACCTAGTGAAACCG	23	1	1	178593-178631	NZ_CP049867.1_4088707-4088745	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|228aa|up_6|NZ_CP049867.1_168795_169479_+,NA	NA|362aa|up_9|NZ_CP049867.1_165612_166698_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|236aa|up_8|NZ_CP049867.1_166792_167500_-	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|341aa|up_7|NZ_CP049867.1_167708_168731_+	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|228aa|up_6|NZ_CP049867.1_168795_169479_+	NA	NA|367aa|up_5|NZ_CP049867.1_169633_170734_+	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily	NA|559aa|up_4|NZ_CP049867.1_170730_172407_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|350aa|up_3|NZ_CP049867.1_172423_173473_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|352aa|up_2|NZ_CP049867.1_173479_174535_+	pfam14378, PAP2_3, PAP2 superfamily	NA|482aa|up_1|NZ_CP049867.1_175127_176573_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|649aa|up_0|NZ_CP049867.1_176608_178555_+	cd01150, AXO, Peroxisomal acyl-CoA oxidase	NA|164aa|down_0|NZ_CP049867.1_178665_179157_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|479aa|down_1|NZ_CP049867.1_179263_180700_+	TIGR00666, D-alanyl-D-alanine_carboxypeptidase_DacB, D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family	NA|350aa|down_2|NZ_CP049867.1_180866_181916_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|367aa|down_3|NZ_CP049867.1_181947_183048_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|184aa|down_4|NZ_CP049867.1_183089_183641_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|676aa|down_5|NZ_CP049867.1_183725_185753_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|205aa|down_6|NZ_CP049867.1_185749_186364_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|291aa|down_7|NZ_CP049867.1_186999_187872_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|136aa|down_8|NZ_CP049867.1_187868_188276_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|131aa|down_9|NZ_CP049867.1_188272_188665_+	pfam02152, FolB, Dihydroneopterin aldolase
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	5	254647-254745	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGCGAAGCGTCAGGCGTGTACGCGCGAAGCGTC	33	1	1	254680-254712	NZ_CP049867.1_4060723-4060755	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA,NA|83aa|down_0|NZ_CP049867.1_254765_255014_-,NA|85aa|down_3|NZ_CP049867.1_255800_256055_+	NA|317aa|up_9|NZ_CP049867.1_243096_244047_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|578aa|up_8|NZ_CP049867.1_244154_245888_+	COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme metabolism]	NA|328aa|up_7|NZ_CP049867.1_245895_246879_+	PRK09283, PRK09283, porphobilinogen synthase	NA|397aa|up_6|NZ_CP049867.1_246955_248146_-	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|458aa|up_5|NZ_CP049867.1_248401_249775_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|225aa|up_4|NZ_CP049867.1_249771_250446_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|233aa|up_3|NZ_CP049867.1_250445_251144_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|236aa|up_2|NZ_CP049867.1_251185_251893_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|575aa|up_1|NZ_CP049867.1_251892_253617_+	pfam05140, ResB, ResB-like family	NA|340aa|up_0|NZ_CP049867.1_253613_254633_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|83aa|down_0|NZ_CP049867.1_254765_255014_-	NA	NA|124aa|down_1|NZ_CP049867.1_255032_255404_+	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|89aa|down_2|NZ_CP049867.1_255447_255714_-	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|85aa|down_3|NZ_CP049867.1_255800_256055_+	NA	NA|302aa|down_4|NZ_CP049867.1_256076_256982_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|332aa|down_5|NZ_CP049867.1_257134_258130_+	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|307aa|down_6|NZ_CP049867.1_258150_259071_+	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional	NA|595aa|down_7|NZ_CP049867.1_259067_260852_+	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|625aa|down_8|NZ_CP049867.1_260912_262787_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|216aa|down_9|NZ_CP049867.1_262789_263437_+	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	6	948636-948771	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGGTGGTCGAGCAGCGAGCGCCAGCGAGCGTCGTCGAAACCT	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|214aa|up_9|NZ_CP049867.1_940911_941553_-,NA	NA|214aa|up_9|NZ_CP049867.1_940911_941553_-	NA	NA|260aa|up_8|NZ_CP049867.1_941841_942621_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|257aa|up_7|NZ_CP049867.1_942888_943659_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|192aa|up_6|NZ_CP049867.1_943766_944342_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|436aa|up_5|NZ_CP049867.1_944375_945683_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|99aa|up_4|NZ_CP049867.1_945739_946036_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|195aa|up_3|NZ_CP049867.1_946040_946625_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|148aa|up_2|NZ_CP049867.1_946660_947104_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|96aa|up_1|NZ_CP049867.1_947204_947492_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|316aa|up_0|NZ_CP049867.1_947502_948450_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|263aa|down_0|NZ_CP049867.1_948939_949728_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|224aa|down_1|NZ_CP049867.1_949787_950459_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|788aa|down_2|NZ_CP049867.1_950498_952862_-	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6	NA|271aa|down_3|NZ_CP049867.1_953120_953933_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|256aa|down_4|NZ_CP049867.1_953973_954741_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|234aa|down_5|NZ_CP049867.1_954749_955451_+	pfam11350, DUF3152, Protein of unknown function (DUF3152)	NA|402aa|down_6|NZ_CP049867.1_955450_956656_+	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|219aa|down_7|NZ_CP049867.1_956689_957346_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|433aa|down_8|NZ_CP049867.1_957342_958641_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|300aa|down_9|NZ_CP049867.1_958769_959669_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	7	1064796-1064927	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	GATCTCGACGACGGGCGCGGGGCGCCCTGCTCGATCACCGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|50aa|up_7|NZ_CP049867.1_1058397_1058547_+,NA|93aa|up_3|NZ_CP049867.1_1060922_1061201_-,NA|111aa|down_3|NZ_CP049867.1_1068906_1069239_+	NA|442aa|up_9|NZ_CP049867.1_1056439_1057765_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|213aa|up_8|NZ_CP049867.1_1057748_1058387_+	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase	NA|50aa|up_7|NZ_CP049867.1_1058397_1058547_+	NA	NA|220aa|up_6|NZ_CP049867.1_1058634_1059294_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|128aa|up_5|NZ_CP049867.1_1059290_1059674_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|216aa|up_4|NZ_CP049867.1_1059688_1060336_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|93aa|up_3|NZ_CP049867.1_1060922_1061201_-	NA	NA|381aa|up_2|NZ_CP049867.1_1061159_1062302_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|164aa|up_1|NZ_CP049867.1_1062534_1063026_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|424aa|up_0|NZ_CP049867.1_1063136_1064408_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|356aa|down_0|NZ_CP049867.1_1065307_1066375_-	PRK13517, PRK13517, glutamate--cysteine ligase	NA|198aa|down_1|NZ_CP049867.1_1066483_1067077_+	cd12108, Hr-like, Hemerythrin-like domain	NA|566aa|down_2|NZ_CP049867.1_1067198_1068896_+	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|111aa|down_3|NZ_CP049867.1_1068906_1069239_+	NA	NA|273aa|down_4|NZ_CP049867.1_1069320_1070139_+	pfam06724, DUF1206, Domain of Unknown Function (DUF1206)	NA|254aa|down_5|NZ_CP049867.1_1070233_1070995_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|335aa|down_6|NZ_CP049867.1_1071057_1072062_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|845aa|down_7|NZ_CP049867.1_1072258_1074793_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|337aa|down_8|NZ_CP049867.1_1075410_1076421_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|397aa|down_9|NZ_CP049867.1_1076431_1077622_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	8	1065154-1065288	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	GATCTCGACGACGGGCGCGGGGCGCCCTGCTCGATCACCGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|50aa|up_7|NZ_CP049867.1_1058397_1058547_+,NA|93aa|up_3|NZ_CP049867.1_1060922_1061201_-,NA|111aa|down_3|NZ_CP049867.1_1068906_1069239_+	NA|442aa|up_9|NZ_CP049867.1_1056439_1057765_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|213aa|up_8|NZ_CP049867.1_1057748_1058387_+	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase	NA|50aa|up_7|NZ_CP049867.1_1058397_1058547_+	NA	NA|220aa|up_6|NZ_CP049867.1_1058634_1059294_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|128aa|up_5|NZ_CP049867.1_1059290_1059674_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|216aa|up_4|NZ_CP049867.1_1059688_1060336_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|93aa|up_3|NZ_CP049867.1_1060922_1061201_-	NA	NA|381aa|up_2|NZ_CP049867.1_1061159_1062302_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|164aa|up_1|NZ_CP049867.1_1062534_1063026_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|424aa|up_0|NZ_CP049867.1_1063136_1064408_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|356aa|down_0|NZ_CP049867.1_1065307_1066375_-	PRK13517, PRK13517, glutamate--cysteine ligase	NA|198aa|down_1|NZ_CP049867.1_1066483_1067077_+	cd12108, Hr-like, Hemerythrin-like domain	NA|566aa|down_2|NZ_CP049867.1_1067198_1068896_+	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|111aa|down_3|NZ_CP049867.1_1068906_1069239_+	NA	NA|273aa|down_4|NZ_CP049867.1_1069320_1070139_+	pfam06724, DUF1206, Domain of Unknown Function (DUF1206)	NA|254aa|down_5|NZ_CP049867.1_1070233_1070995_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|335aa|down_6|NZ_CP049867.1_1071057_1072062_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|845aa|down_7|NZ_CP049867.1_1072258_1074793_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|337aa|down_8|NZ_CP049867.1_1075410_1076421_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|397aa|down_9|NZ_CP049867.1_1076431_1077622_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	9	1174523-1174627	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	GGTCGTCGCCGTCGCCACCGTCGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|172aa|up_8|NZ_CP049867.1_1160291_1160807_+,NA|189aa|down_0|NZ_CP049867.1_1182621_1183188_-,NA|819aa|down_8|NZ_CP049867.1_1189659_1192116_+	NA|971aa|up_9|NZ_CP049867.1_1157379_1160292_+	PRK05667, dnaG, DNA primase; Validated	NA|172aa|up_8|NZ_CP049867.1_1160291_1160807_+	NA	NA|253aa|up_7|NZ_CP049867.1_1161055_1161814_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|477aa|up_6|NZ_CP049867.1_1162086_1163517_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|434aa|up_5|NZ_CP049867.1_1163527_1164829_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_4|NZ_CP049867.1_1164982_1165273_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|144aa|up_3|NZ_CP049867.1_1165382_1165814_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|495aa|up_2|NZ_CP049867.1_1165908_1167393_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|477aa|up_1|NZ_CP049867.1_1167604_1169035_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|655aa|up_0|NZ_CP049867.1_1169031_1170996_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|189aa|down_0|NZ_CP049867.1_1182621_1183188_-	NA	NA|554aa|down_1|NZ_CP049867.1_1183354_1185016_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|464aa|down_2|NZ_CP049867.1_1185012_1186404_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|360aa|down_3|NZ_CP049867.1_1186393_1187473_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|140aa|down_4|NZ_CP049867.1_1187460_1187880_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|132aa|down_5|NZ_CP049867.1_1187876_1188272_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|289aa|down_6|NZ_CP049867.1_1188271_1189138_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|84aa|down_7|NZ_CP049867.1_1189209_1189461_+	pfam11298, DUF3099, Protein of unknown function (DUF3099)	NA|819aa|down_8|NZ_CP049867.1_1189659_1192116_+	NA	NA|348aa|down_9|NZ_CP049867.1_1192152_1193196_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	10	1274268-1274372	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CCGGGGCCCGGGTCTCGACGACGCTCGCTGGCGC	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|93aa|up_8|NZ_CP049867.1_1266044_1266323_+,NA|197aa|up_6|NZ_CP049867.1_1269375_1269966_+,NA|98aa|up_4|NZ_CP049867.1_1270439_1270733_+,NA|300aa|down_0|NZ_CP049867.1_1274467_1275367_-,NA|115aa|down_6|NZ_CP049867.1_1282914_1283259_-	NA|234aa|up_9|NZ_CP049867.1_1265159_1265861_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|93aa|up_8|NZ_CP049867.1_1266044_1266323_+	NA	NA|767aa|up_7|NZ_CP049867.1_1266944_1269245_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|197aa|up_6|NZ_CP049867.1_1269375_1269966_+	NA	NA|116aa|up_5|NZ_CP049867.1_1269987_1270335_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|98aa|up_4|NZ_CP049867.1_1270439_1270733_+	NA	NA|304aa|up_3|NZ_CP049867.1_1270702_1271614_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|245aa|up_2|NZ_CP049867.1_1271646_1272381_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|166aa|up_1|NZ_CP049867.1_1272513_1273011_+	pfam12867, DinB_2, DinB superfamily	NA|340aa|up_0|NZ_CP049867.1_1273012_1274032_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|300aa|down_0|NZ_CP049867.1_1274467_1275367_-	NA	NA|323aa|down_1|NZ_CP049867.1_1275540_1276509_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|425aa|down_2|NZ_CP049867.1_1276535_1277810_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|795aa|down_3|NZ_CP049867.1_1277806_1280191_+	COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	NA|326aa|down_4|NZ_CP049867.1_1280278_1281256_+	pfam14525, AraC_binding_2, AraC-binding-like domain	NA|489aa|down_5|NZ_CP049867.1_1281435_1282902_+	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like	NA|115aa|down_6|NZ_CP049867.1_1282914_1283259_-	NA	NA|174aa|down_7|NZ_CP049867.1_1283285_1283807_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|333aa|down_8|NZ_CP049867.1_1284006_1285005_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|207aa|down_9|NZ_CP049867.1_1285142_1285763_-	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	11	2829284-2829370	11	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	TCACTAGGTACCTAGTGAAACTGGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|378aa|up_8|NZ_CP049867.1_2820500_2821634_+,NA|132aa|down_5|NZ_CP049867.1_2835903_2836299_-	NA|169aa|up_9|NZ_CP049867.1_2819994_2820501_+	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family	NA|378aa|up_8|NZ_CP049867.1_2820500_2821634_+	NA	NA|201aa|up_7|NZ_CP049867.1_2821679_2822282_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|222aa|up_6|NZ_CP049867.1_2822278_2822944_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|402aa|up_5|NZ_CP049867.1_2822994_2824200_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|416aa|up_4|NZ_CP049867.1_2824196_2825444_-	cd04433, AFD_class_I, Adenylate forming domain, Class I, also known as the ANL superfamily	NA|213aa|up_3|NZ_CP049867.1_2825517_2826156_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|255aa|up_2|NZ_CP049867.1_2826244_2827009_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|267aa|up_1|NZ_CP049867.1_2827019_2827820_-	PRK06057, PRK06057, short chain dehydrogenase; Provisional	NA|449aa|up_0|NZ_CP049867.1_2827876_2829223_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|456aa|down_0|NZ_CP049867.1_2829374_2830742_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|311aa|down_1|NZ_CP049867.1_2831007_2831940_-	PRK06197, PRK06197, short chain dehydrogenase; Provisional	NA|630aa|down_2|NZ_CP049867.1_2832006_2833896_-	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|299aa|down_3|NZ_CP049867.1_2833989_2834886_+	pfam10069, DICT, Sensory domain in DIguanylate Cyclases and Two-component system	NA|267aa|down_4|NZ_CP049867.1_2835089_2835890_+	pfam03724, META, META domain	NA|132aa|down_5|NZ_CP049867.1_2835903_2836299_-	NA	NA|453aa|down_6|NZ_CP049867.1_2836295_2837654_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|346aa|down_7|NZ_CP049867.1_2837653_2838691_-	cd09990, Agmatinase-like, Agmatinase-like family	NA|475aa|down_8|NZ_CP049867.1_2838879_2840304_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|700aa|down_9|NZ_CP049867.1_2840507_2842607_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	12	3049138-3049241	12	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGCAACCTGCTCGACCACCGGGTGCGCGCGACCACC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA,NA|104aa|down_3|NZ_CP049867.1_3052987_3053299_-	NA|395aa|up_9|NZ_CP049867.1_3035379_3036564_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|444aa|up_8|NZ_CP049867.1_3036870_3038202_+	PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional	NA|279aa|up_7|NZ_CP049867.1_3038223_3039060_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|573aa|up_6|NZ_CP049867.1_3039062_3040781_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|437aa|up_5|NZ_CP049867.1_3040829_3042140_-	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|423aa|up_4|NZ_CP049867.1_3042210_3043479_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|499aa|up_3|NZ_CP049867.1_3043478_3044975_-	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|143aa|up_2|NZ_CP049867.1_3044984_3045413_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|724aa|up_1|NZ_CP049867.1_3045409_3047581_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|273aa|up_0|NZ_CP049867.1_3047713_3048532_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|352aa|down_0|NZ_CP049867.1_3049288_3050344_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|350aa|down_1|NZ_CP049867.1_3050457_3051507_-	TIGR03555, 510-methylenetetrahydromethanopterin_reductase, 5,10-methylenetetrahydromethanopterin reductase	NA|467aa|down_2|NZ_CP049867.1_3051503_3052904_-	TIGR03428, ureacarb_perm, permease, urea carboxylase system	NA|104aa|down_3|NZ_CP049867.1_3052987_3053299_-	NA	NA|504aa|down_4|NZ_CP049867.1_3053295_3054807_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|433aa|down_5|NZ_CP049867.1_3054803_3056102_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|178aa|down_6|NZ_CP049867.1_3056377_3056911_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|569aa|down_7|NZ_CP049867.1_3057012_3058719_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|472aa|down_8|NZ_CP049867.1_3058826_3060242_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|318aa|down_9|NZ_CP049867.1_3060453_3061407_-	cd06251, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	13	3206812-3206896	13	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGGTTTCACTAGGTACCTAGTGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|317aa|up_7|NZ_CP049867.1_3198236_3199187_+,NA|96aa|up_6|NZ_CP049867.1_3199351_3199639_+,NA|97aa|up_5|NZ_CP049867.1_3199781_3200072_+,NA|366aa|up_0|NZ_CP049867.1_3205667_3206765_+,NA|136aa|down_0|NZ_CP049867.1_3206914_3207322_-,NA|116aa|down_4|NZ_CP049867.1_3211600_3211948_-	NA|364aa|up_9|NZ_CP049867.1_3195998_3197090_-	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed	NA|334aa|up_8|NZ_CP049867.1_3197179_3198181_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|317aa|up_7|NZ_CP049867.1_3198236_3199187_+	NA	NA|96aa|up_6|NZ_CP049867.1_3199351_3199639_+	NA	NA|97aa|up_5|NZ_CP049867.1_3199781_3200072_+	NA	NA|432aa|up_4|NZ_CP049867.1_3200075_3201371_-	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|349aa|up_3|NZ_CP049867.1_3201719_3202766_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|598aa|up_2|NZ_CP049867.1_3202812_3204606_-	pfam04294, VanW, VanW like protein	NA|303aa|up_1|NZ_CP049867.1_3204701_3205610_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|366aa|up_0|NZ_CP049867.1_3205667_3206765_+	NA	NA|136aa|down_0|NZ_CP049867.1_3206914_3207322_-	NA	NA|387aa|down_1|NZ_CP049867.1_3207495_3208656_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|343aa|down_2|NZ_CP049867.1_3208655_3209684_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|294aa|down_3|NZ_CP049867.1_3210557_3211439_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|116aa|down_4|NZ_CP049867.1_3211600_3211948_-	NA	NA|254aa|down_5|NZ_CP049867.1_3212092_3212854_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|156aa|down_6|NZ_CP049867.1_3212850_3213318_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|135aa|down_7|NZ_CP049867.1_3213327_3213732_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|278aa|down_8|NZ_CP049867.1_3213739_3214573_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|228aa|down_9|NZ_CP049867.1_3214582_3215266_-	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	14	3261571-3261655	14	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CGTCGGTTTCACTAGGTACCTAG	23	1	15	3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632|3261594-3261632	NZ_CP049867.1_1584092-1584054|NZ_CP049867.1_314197-314159|NZ_CP049867.1_347202-347240|NZ_CP049867.1_1000683-1000721|NZ_CP049867.1_2666686-2666724|NZ_CP049867.1_2690517-2690555|NZ_CP049867.1_677921-677883|NZ_CP049867.1_736563-736525|NZ_CP049867.1_999545-999507|NZ_CP049867.1_1113715-1113677|NZ_CP049867.1_1135662-1135624|NZ_CP049867.1_1889032-1889070|NZ_CP049867.1_2366578-2366540|NZ_CP049867.1_2520284-2520322|NZ_CP049867.1_2648249-2648287	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA,NA|108aa|down_1|NZ_CP049867.1_3262688_3263012_-	NA|499aa|up_9|NZ_CP049867.1_3249728_3251225_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|701aa|up_8|NZ_CP049867.1_3251224_3253327_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|495aa|up_7|NZ_CP049867.1_3253431_3254916_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|878aa|up_6|NZ_CP049867.1_3254957_3257591_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|116aa|up_5|NZ_CP049867.1_3257587_3257935_+	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium	NA|373aa|up_4|NZ_CP049867.1_3258012_3259131_+	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|235aa|up_3|NZ_CP049867.1_3259127_3259832_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|130aa|up_2|NZ_CP049867.1_3259998_3260388_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|203aa|up_1|NZ_CP049867.1_3260402_3261011_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|144aa|up_0|NZ_CP049867.1_3261133_3261565_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|303aa|down_0|NZ_CP049867.1_3261700_3262609_+	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|108aa|down_1|NZ_CP049867.1_3262688_3263012_-	NA	NA|292aa|down_2|NZ_CP049867.1_3263008_3263884_-	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|145aa|down_3|NZ_CP049867.1_3263969_3264404_+	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|188aa|down_4|NZ_CP049867.1_3264480_3265044_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|448aa|down_5|NZ_CP049867.1_3265074_3266418_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|182aa|down_6|NZ_CP049867.1_3266502_3267048_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|518aa|down_7|NZ_CP049867.1_3267044_3268598_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|216aa|down_8|NZ_CP049867.1_3268631_3269279_-	pfam13305, WHG, WHG domain	NA|512aa|down_9|NZ_CP049867.1_3269370_3270906_+	PRK14995, PRK14995, SmvA family efflux MFS transporter
GCF_011299595.1_ASM1129959v1	NZ_CP049867	Nocardioides sp. HDW12B chromosome, complete genome	15	3509343-3509415	15	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas4,WYL	Orphan	CCGTACGTCGTTGACGACGTGGGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas4,WYL	NA|250aa|up_4|NZ_CP049867.1_3501576_3502326_-,NA|149aa|down_8|NZ_CP049867.1_3520459_3520906_+	NA|430aa|up_9|NZ_CP049867.1_3493289_3494579_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|461aa|up_8|NZ_CP049867.1_3494575_3495958_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|385aa|up_7|NZ_CP049867.1_3496044_3497199_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|452aa|up_6|NZ_CP049867.1_3497319_3498675_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|425aa|up_5|NZ_CP049867.1_3500189_3501464_-	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	NA|250aa|up_4|NZ_CP049867.1_3501576_3502326_-	NA	NA|99aa|up_3|NZ_CP049867.1_3502509_3502806_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|104aa|up_2|NZ_CP049867.1_3502858_3503170_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|529aa|up_1|NZ_CP049867.1_3503420_3505007_-	pfam08817, YukD, WXG100 protein secretion system (Wss), protein YukD	NA|1357aa|up_0|NZ_CP049867.1_3505226_3509297_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|277aa|down_0|NZ_CP049867.1_3509423_3510254_-	cd05830, Sortase_E, Sortase domain found in the class E family of sortases	NA|866aa|down_1|NZ_CP049867.1_3510562_3513160_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|718aa|down_2|NZ_CP049867.1_3513368_3515522_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|121aa|down_3|NZ_CP049867.1_3515561_3515924_-	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|150aa|down_4|NZ_CP049867.1_3516022_3516472_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|403aa|down_5|NZ_CP049867.1_3516464_3517673_-	PRK14295, PRK14295, molecular chaperone DnaJ	NA|185aa|down_6|NZ_CP049867.1_3517734_3518289_-	PRK14163, PRK14163, heat shock protein GrpE; Provisional	NA|616aa|down_7|NZ_CP049867.1_3518423_3520271_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|149aa|down_8|NZ_CP049867.1_3520459_3520906_+	NA	NA|185aa|down_9|NZ_CP049867.1_3520886_3521441_-	TIGR01402, Flagellar_biosynthetic_protein_FliQ, flagellar biosynthetic protein FliQ
