assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	1	1158276-1158393	1	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	TGCTGCCCGGCGGCGCTGCGCTTGCGCGGGCCTACGGG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA,NA	NA|181aa|up_9|NZ_CP049752.1_1147616_1148159_+	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional	NA|256aa|up_8|NZ_CP049752.1_1148158_1148926_+	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|137aa|up_7|NZ_CP049752.1_1148922_1149333_+	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|157aa|up_6|NZ_CP049752.1_1149325_1149796_+	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|475aa|up_5|NZ_CP049752.1_1150109_1151534_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|481aa|up_4|NZ_CP049752.1_1151562_1153005_-	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional	NA|338aa|up_3|NZ_CP049752.1_1153271_1154285_+	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|176aa|up_2|NZ_CP049752.1_1154432_1154960_+	PRK10330, PRK10330, electron transport protein HydN	NA|745aa|up_1|NZ_CP049752.1_1154972_1157207_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|349aa|up_0|NZ_CP049752.1_1157203_1158250_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|378aa|down_0|NZ_CP049752.1_1158513_1159647_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|483aa|down_1|NZ_CP049752.1_1159643_1161092_-	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|515aa|down_2|NZ_CP049752.1_1161288_1162833_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|322aa|down_3|NZ_CP049752.1_1162795_1163761_-	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|258aa|down_4|NZ_CP049752.1_1163753_1164527_-	PRK10434, srlR, DNA-binding transcriptional repressor	NA|120aa|down_5|NZ_CP049752.1_1164598_1164958_-	PRK10234, PRK10234, transcriptional regulator GutM	NA|260aa|down_6|NZ_CP049752.1_1165022_1165802_-	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|121aa|down_7|NZ_CP049752.1_1165819_1166182_-	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|326aa|down_8|NZ_CP049752.1_1166195_1167173_-	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|188aa|down_9|NZ_CP049752.1_1167169_1167733_-	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	2	3503407-3503556	2	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	GGAACCTCTCCCCGGTGGCGCTACGCTTACCGGGGCTACCTGATACC	47	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA,NA	NA|496aa|up_9|NZ_CP049752.1_3490340_3491828_+	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional	NA|427aa|up_8|NZ_CP049752.1_3491830_3493111_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|317aa|up_7|NZ_CP049752.1_3493244_3494195_-	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|362aa|up_6|NZ_CP049752.1_3494277_3495363_+	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|834aa|up_5|NZ_CP049752.1_3495398_3497900_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|359aa|up_4|NZ_CP049752.1_3498208_3499285_+	PRK10478, PRK10478, PTS fructose transporter subunit EIIC	NA|107aa|up_3|NZ_CP049752.1_3499305_3499626_+	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]	NA|766aa|up_2|NZ_CP049752.1_3499765_3502063_+	PRK09983, pflD, putative formate acetyltransferase 2; Provisional	NA|292aa|up_1|NZ_CP049752.1_3502028_3502904_+	PRK10076, PRK10076, pyruvate formate lyase II activase; Provisional	NA|114aa|up_0|NZ_CP049752.1_3502919_3503261_+	PRK10427, PRK10427, PTS fructose-like transporter subunit IIB	NA|256aa|down_0|NZ_CP049752.1_3503725_3504493_-	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|278aa|down_1|NZ_CP049752.1_3504743_3505577_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|302aa|down_2|NZ_CP049752.1_3505582_3506488_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|421aa|down_3|NZ_CP049752.1_3506826_3508089_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed	NA|414aa|down_4|NZ_CP049752.1_3508085_3509327_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|246aa|down_5|NZ_CP049752.1_3509342_3510080_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|219aa|down_6|NZ_CP049752.1_3510060_3510717_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|222aa|down_7|NZ_CP049752.1_3510716_3511382_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|262aa|down_8|NZ_CP049752.1_3511391_3512177_-	cd01072, PBP2_SMa0082_like, The substrate-binding domain of putatuve amino acid transporter; the type 2 periplasmic binding protein fold	NA|280aa|down_9|NZ_CP049752.1_3512390_3513230_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	3	3737100-3737202	3	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	GAGCCGTTTCCATTCGGCTCTTGAGCCGTTTCCA	34	1	1	3737134-3737168	NZ_CP049752.1_2483637-2483603	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA|90aa|up_8|NZ_CP049752.1_3731074_3731344_-,NA|77aa|up_7|NZ_CP049752.1_3731424_3731655_-,NA|105aa|up_5|NZ_CP049752.1_3732743_3733058_-,NA|71aa|up_2|NZ_CP049752.1_3735650_3735863_-,NA|113aa|down_3|NZ_CP049752.1_3739273_3739612_-,NA|75aa|down_6|NZ_CP049752.1_3740681_3740906_+,NA|132aa|down_7|NZ_CP049752.1_3740902_3741298_+,NA|104aa|down_8|NZ_CP049752.1_3741275_3741587_+	NA|198aa|up_9|NZ_CP049752.1_3729986_3730580_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|90aa|up_8|NZ_CP049752.1_3731074_3731344_-	NA	NA|77aa|up_7|NZ_CP049752.1_3731424_3731655_-	NA	NA|266aa|up_6|NZ_CP049752.1_3731647_3732445_-	pfam04447, DUF550, Protein of unknown function (DUF550)	NA|105aa|up_5|NZ_CP049752.1_3732743_3733058_-	NA	NA|254aa|up_4|NZ_CP049752.1_3733058_3733820_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|263aa|up_3|NZ_CP049752.1_3734869_3735658_-	TIGR03734, PRTRC_parB, PRTRC system ParB family protein	NA|71aa|up_2|NZ_CP049752.1_3735650_3735863_-	NA	NA|132aa|up_1|NZ_CP049752.1_3735859_3736255_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|97aa|up_0|NZ_CP049752.1_3736283_3736574_-	TIGR04176, hypothetical_protein, EPS-associated transcriptional regulator, MarR family	NA|138aa|down_0|NZ_CP049752.1_3737888_3738302_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|76aa|down_1|NZ_CP049752.1_3738285_3738513_-	PRK09744, PRK09744, DNA-binding transcriptional regulator DicC; Provisional	NA|136aa|down_2|NZ_CP049752.1_3738592_3739000_+	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed	NA|113aa|down_3|NZ_CP049752.1_3739273_3739612_-	NA	NA|98aa|down_4|NZ_CP049752.1_3739870_3740164_+	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|74aa|down_5|NZ_CP049752.1_3740228_3740450_+	COG5319, COG5319, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_6|NZ_CP049752.1_3740681_3740906_+	NA	NA|132aa|down_7|NZ_CP049752.1_3740902_3741298_+	NA	NA|104aa|down_8|NZ_CP049752.1_3741275_3741587_+	NA	NA|72aa|down_9|NZ_CP049752.1_3741682_3741898_+	pfam06806, DUF1233, Putative excisionase (DUF1233)
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	4	4526188-4526281	4	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	GCGACGTTAAAAATCGCTCCCGGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA,NA	NA|810aa|up_9|NZ_CP049752.1_4514579_4517009_-	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional	NA|451aa|up_8|NZ_CP049752.1_4517040_4518393_-	PRK10779, PRK10779, sigma E protease regulator RseP	NA|286aa|up_7|NZ_CP049752.1_4518404_4519262_-	PRK11624, cdsA, phosphatidate cytidylyltransferase	NA|253aa|up_6|NZ_CP049752.1_4519274_4520033_-	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA|401aa|up_5|NZ_CP049752.1_4520282_4521485_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|186aa|up_4|NZ_CP049752.1_4521724_4522282_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|242aa|up_3|NZ_CP049752.1_4522432_4523158_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|284aa|up_2|NZ_CP049752.1_4523305_4524157_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|242aa|up_1|NZ_CP049752.1_4524274_4525000_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|265aa|up_0|NZ_CP049752.1_4525323_4526118_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|888aa|down_0|NZ_CP049752.1_4526321_4528985_+	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|275aa|down_1|NZ_CP049752.1_4529020_4529845_+	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|130aa|down_2|NZ_CP049752.1_4529952_4530342_+	PRK13677, PRK13677, DUF3461 family protein	NA|386aa|down_3|NZ_CP049752.1_4530432_4531590_-	PRK11477, PRK11477, CdaR family transcriptional regulator	NA|480aa|down_4|NZ_CP049752.1_4531780_4533220_-	PRK10942, PRK10942, serine endoprotease DegP	NA|505aa|down_5|NZ_CP049752.1_4533354_4534869_-	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional	NA|233aa|down_6|NZ_CP049752.1_4534953_4535652_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|267aa|down_7|NZ_CP049752.1_4535644_4536445_+	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional	NA|208aa|down_8|NZ_CP049752.1_4536587_4537211_+	PRK10578, PRK10578, hypothetical protein; Provisional	NA|115aa|down_9|NZ_CP049752.1_4537268_4537613_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	5	4747664-4747753	5	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	TACGCCTTATCCGGCCTACAGATTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA,NA	NA|216aa|up_9|NZ_CP049752.1_4736477_4737125_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_8|NZ_CP049752.1_4737238_4737754_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|109aa|up_7|NZ_CP049752.1_4737740_4738067_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_6|NZ_CP049752.1_4738220_4740158_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_5|NZ_CP049752.1_4740391_4742059_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|up_4|NZ_CP049752.1_4742127_4743360_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_3|NZ_CP049752.1_4743505_4744888_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|up_2|NZ_CP049752.1_4744898_4745870_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|212aa|up_1|NZ_CP049752.1_4745973_4746609_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_0|NZ_CP049752.1_4746626_4747643_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_0|NZ_CP049752.1_4747810_4748530_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_1|NZ_CP049752.1_4748633_4749857_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_2|NZ_CP049752.1_4749909_4751232_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_3|NZ_CP049752.1_4751388_4752168_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|260aa|down_4|NZ_CP049752.1_4752636_4753416_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_5|NZ_CP049752.1_4753412_4754486_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_6|NZ_CP049752.1_4754736_4754898_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|204aa|down_7|NZ_CP049752.1_4755152_4755764_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_8|NZ_CP049752.1_4755982_4757572_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_9|NZ_CP049752.1_4757663_4758341_-	PRK09449, PRK09449, dUMP phosphatase; Provisional
GCF_011149255.1_ASM1114925v1	NZ_CP049752	Raoultella ornithinolytica strain WM1 chromosome, complete genome	6	4799439-4799522	6	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	ACCGTAGGCCGGGTAAGCGTAGCGCC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh,DinG,WYL	NA,NA	NA|316aa|up_9|NZ_CP049752.1_4790894_4791842_+	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|370aa|up_8|NZ_CP049752.1_4791838_4792948_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|88aa|up_7|NZ_CP049752.1_4792944_4793208_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|422aa|up_6|NZ_CP049752.1_4793188_4794454_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|152aa|up_5|NZ_CP049752.1_4794455_4794911_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|211aa|up_4|NZ_CP049752.1_4795200_4795833_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|255aa|up_3|NZ_CP049752.1_4795829_4796594_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|489aa|up_2|NZ_CP049752.1_4796590_4798057_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|286aa|up_1|NZ_CP049752.1_4798128_4798986_+	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|127aa|up_0|NZ_CP049752.1_4798995_4799376_+	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|268aa|down_0|NZ_CP049752.1_4799571_4800375_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|266aa|down_1|NZ_CP049752.1_4800385_4801183_+	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA|453aa|down_2|NZ_CP049752.1_4801204_4802563_+	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|297aa|down_3|NZ_CP049752.1_4802572_4803463_+	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|521aa|down_4|NZ_CP049752.1_4803811_4805374_+	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA|171aa|down_5|NZ_CP049752.1_4805393_4805906_+	PRK15486, hpaC, 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional	NA|717aa|down_6|NZ_CP049752.1_4806240_4808391_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|68aa|down_7|NZ_CP049752.1_4808489_4808693_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|319aa|down_8|NZ_CP049752.1_4808704_4809661_+	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional	NA|182aa|down_9|NZ_CP049752.1_4810140_4810686_+	pfam07437, YfaZ, YfaZ precursor
