assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011106835.1_ASM1110683v1	NZ_CP045857	Shewanella chilikensis strain DC57 chromosome, complete genome	1	1593460-1593590	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	Orphan	TTTTGGATGTCCTGAGGTTACTCT	24	1	7	1593484-1593503|1593484-1593503|1593484-1593503|1593484-1593503|1593484-1593503|1593484-1593503|1593484-1593503	NZ_CP045857.1_1593440-1593459|NZ_CP045857.1_4774836-4774817|NZ_CP045857.1_4775815-4775796|NZ_CP045857.1_1603863-1603882|NZ_CP045857.1_4236136-4236117|NZ_CP045857.1_606170-606189|NZ_CP045857.1_606690-606709	NA	2	2	Orphan	csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	NA|330aa|up_0|NZ_CP045857.1_1592290_1593280_+,NA|330aa|down_4|NZ_CP045857.1_1600109_1601099_+	NA|297aa|up_9|NZ_CP045857.1_1582508_1583399_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|188aa|up_8|NZ_CP045857.1_1583463_1584027_-	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|160aa|up_7|NZ_CP045857.1_1584110_1584590_-	pfam11163, DUF2947, Protein of unknown function (DUF2947)	NA|109aa|up_6|NZ_CP045857.1_1584784_1585111_-	sd00006, TPR, Tetratricopeptide repeat	NA|277aa|up_5|NZ_CP045857.1_1585318_1586149_+	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|289aa|up_4|NZ_CP045857.1_1586155_1587022_+	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|272aa|up_3|NZ_CP045857.1_1587063_1587879_+	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|241aa|up_2|NZ_CP045857.1_1587880_1588603_+	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|777aa|up_1|NZ_CP045857.1_1588672_1591003_-	COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	NA|330aa|up_0|NZ_CP045857.1_1592290_1593280_+	NA	NA|290aa|down_0|NZ_CP045857.1_1593702_1594572_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|657aa|down_1|NZ_CP045857.1_1594892_1596863_+	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|283aa|down_2|NZ_CP045857.1_1597570_1598419_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|467aa|down_3|NZ_CP045857.1_1598520_1599921_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|330aa|down_4|NZ_CP045857.1_1600109_1601099_+	NA	NA|507aa|down_5|NZ_CP045857.1_1601378_1602899_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|247aa|down_6|NZ_CP045857.1_1602913_1603654_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|386aa|down_7|NZ_CP045857.1_1604224_1605382_-	pfam16539, FlgT_M, Flagellar assembly protein T, middle domain	NA|203aa|down_8|NZ_CP045857.1_1606190_1606799_+	pfam17680, FlgO, FlgO protein	NA|156aa|down_9|NZ_CP045857.1_1606798_1607266_+	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_011106835.1_ASM1110683v1	NZ_CP045857	Shewanella chilikensis strain DC57 chromosome, complete genome	2	3167693-3167784	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	Orphan	CCACATTTACCTTCGCCGCACTTGCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	NA,NA	NA|154aa|up_9|NZ_CP045857.1_3158401_3158863_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|260aa|up_8|NZ_CP045857.1_3158875_3159655_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|200aa|up_7|NZ_CP045857.1_3159696_3160296_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|110aa|up_6|NZ_CP045857.1_3160309_3160639_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|972aa|up_5|NZ_CP045857.1_3160769_3163685_-	PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional	NA|184aa|up_4|NZ_CP045857.1_3163806_3164358_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|132aa|up_3|NZ_CP045857.1_3164453_3164849_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|125aa|up_2|NZ_CP045857.1_3164936_3165311_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|261aa|up_1|NZ_CP045857.1_3165822_3166605_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|279aa|up_0|NZ_CP045857.1_3166604_3167441_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|318aa|down_0|NZ_CP045857.1_3168214_3169168_+	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC	NA|114aa|down_1|NZ_CP045857.1_3169294_3169636_+	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|884aa|down_2|NZ_CP045857.1_3169766_3172418_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|891aa|down_3|NZ_CP045857.1_3173627_3176300_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|144aa|down_4|NZ_CP045857.1_3176689_3177121_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|66aa|down_5|NZ_CP045857.1_3177520_3177718_-	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly	NA|300aa|down_6|NZ_CP045857.1_3177810_3178710_-	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|112aa|down_7|NZ_CP045857.1_3178842_3179178_-	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|621aa|down_8|NZ_CP045857.1_3179186_3181049_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|175aa|down_9|NZ_CP045857.1_3181132_3181657_-	PRK05014, hscB, co-chaperone HscB; Provisional
GCF_011106835.1_ASM1110683v1	NZ_CP045857	Shewanella chilikensis strain DC57 chromosome, complete genome	3	3614532-3614667	3,1	CRISPRCasFinder,CRT	no		csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	Orphan	CATTAACGCTGGGTGTCCATATTT,AACGCTGGGTGTCCATAT	24,18	0	0	NA	NA	NA:NA	1,3	3	Orphan	csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	NA|272aa|up_3|NZ_CP045857.1_3610628_3611444_-,NA|90aa|up_1|NZ_CP045857.1_3612577_3612847_-,NA|326aa|up_0|NZ_CP045857.1_3613497_3614475_-,NA|153aa|down_2|NZ_CP045857.1_3617110_3617569_+,NA|139aa|down_3|NZ_CP045857.1_3617565_3617982_+	NA|282aa|up_9|NZ_CP045857.1_3604244_3605090_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|362aa|up_8|NZ_CP045857.1_3605101_3606187_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|417aa|up_7|NZ_CP045857.1_3606201_3607452_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|224aa|up_6|NZ_CP045857.1_3607690_3608362_+	cd16326, LolB, LolB, an outer membrane lipoprotein receptor	NA|293aa|up_5|NZ_CP045857.1_3608358_3609237_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|316aa|up_4|NZ_CP045857.1_3609315_3610263_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|272aa|up_3|NZ_CP045857.1_3610628_3611444_-	NA	NA|384aa|up_2|NZ_CP045857.1_3611464_3612615_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|up_1|NZ_CP045857.1_3612577_3612847_-	NA	NA|326aa|up_0|NZ_CP045857.1_3613497_3614475_-	NA	NA|177aa|down_0|NZ_CP045857.1_3615215_3615746_+	pfam08719, DUF1768, Domain of unknown function (DUF1768)	NA|378aa|down_1|NZ_CP045857.1_3615858_3616992_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|153aa|down_2|NZ_CP045857.1_3617110_3617569_+	NA	NA|139aa|down_3|NZ_CP045857.1_3617565_3617982_+	NA	NA|438aa|down_4|NZ_CP045857.1_3618272_3619586_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|424aa|down_5|NZ_CP045857.1_3619850_3621122_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|481aa|down_6|NZ_CP045857.1_3621169_3622612_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|429aa|down_7|NZ_CP045857.1_3622658_3623945_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|272aa|down_8|NZ_CP045857.1_3624114_3624930_-	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|300aa|down_9|NZ_CP045857.1_3624926_3625826_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional
GCF_011106835.1_ASM1110683v1	NZ_CP045857	Shewanella chilikensis strain DC57 chromosome, complete genome	4	4304461-4308582	4,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	Type I-E	CGGTTTATCCCCGTGGGTGCGGGGAACTC,CGGTTTATCCCCGTGGGTGCGGGGAACTC,CGGTTTATCCCCGTGGGTGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	67,67,37	67	TypeI-E	csa3,DEDDh,cas3,PD-DExK,WYL,cas14j,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PrimPol,TnsE_C	NA,NA	NA|634aa|up_9|NZ_CP045857.1_4286385_4288287_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|337aa|up_8|NZ_CP045857.1_4288283_4289294_+	PRK09283, PRK09283, porphobilinogen synthase	NA|179aa|up_7|NZ_CP045857.1_4289497_4290034_+	pfam14595, Thioredoxin_9, Thioredoxin	NA|307aa|up_6|NZ_CP045857.1_4290138_4291059_-	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA|438aa|up_5|NZ_CP045857.1_4291059_4292373_-	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	NA|109aa|up_4|NZ_CP045857.1_4292526_4292853_+	PRK09381, trxA, thioredoxin TrxA	NA|422aa|up_3|NZ_CP045857.1_4293066_4294332_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|440aa|up_2|NZ_CP045857.1_4294439_4295759_-	PRK05279, PRK05279, N-acetylglutamate synthase; Validated	NA|1885aa|up_1|NZ_CP045857.1_4296428_4302083_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|762aa|up_0|NZ_CP045857.1_4302079_4304365_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	cas2|97aa|down_0|NZ_CP045857.1_4308680_4308971_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP045857.1_4308973_4309891_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|294aa|down_2|NZ_CP045857.1_4309910_4310792_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|244aa|down_3|NZ_CP045857.1_4310791_4311523_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|360aa|down_4|NZ_CP045857.1_4311533_4312613_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|176aa|down_5|NZ_CP045857.1_4312648_4313176_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|529aa|down_6|NZ_CP045857.1_4313175_4314762_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|900aa|down_7|NZ_CP045857.1_4314758_4317458_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|264aa|down_8|NZ_CP045857.1_4317574_4318366_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|234aa|down_9|NZ_CP045857.1_4318784_4319486_+	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein
