The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049736	Bordetella hinzii strain FY01 chromosome, complete genome	5045412	292074	300789	5045412	tRNA	Staphylococcus_phage(33.33%)	10	NA	NA
WP_029579784.1|292074_292587_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	44.3	6.5e-22
WP_029579783.1|292681_293623_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	41.8	2.0e-08
WP_029579782.1|293619_294246_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_029579781.1|294252_294888_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_029579780.1|294884_295463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553342.1|295473_296061_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.5	1.5e-06
WP_165553344.1|296163_297087_-	hydroxymethylglutaryl-CoA lyase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	35.7	4.1e-06
WP_029579777.1|297097_298288_-	CoA transferase	NA	NA	NA	NA	NA
WP_165553346.1|298299_299022_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	6.4e-15
WP_029579775.1|299031_300789_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	NA	A0A2H4PQG7	Staphylococcus_phage	22.8	1.2e-11
>prophage 2
NZ_CP049736	Bordetella hinzii strain FY01 chromosome, complete genome	5045412	1088100	1119513	5045412	terminase,tail,integrase,transposase,head	Bordetella_phage(45.0%)	29	1090179:1090195	1121361:1121377
WP_165553811.1|1088100_1088400_-	AlpA family phage regulatory protein	NA	A0A2L0V109	Agrobacterium_phage	38.5	1.9e-05
WP_165553812.1|1088485_1088998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553814.1|1089000_1089951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_165553251.1|1090032_1090470_-	hypothetical protein	NA	NA	NA	NA	NA
1090179:1090195	attL	CGTCGCTGCGATCTTCG	NA	NA	NA	NA
WP_165553816.1|1090492_1091689_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	41.2	4.5e-82
WP_165553818.1|1092139_1092430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553820.1|1092426_1093137_-	hypothetical protein	NA	J9Q7Y7	Salmonella_phage	45.9	1.9e-43
WP_165553822.1|1093147_1093435_-	hypothetical protein	NA	Q775E0	Bordetella_phage	52.1	3.4e-12
WP_165553824.1|1093434_1093692_-	hypothetical protein	NA	Q775D9	Bordetella_phage	72.2	2.0e-27
WP_165553826.1|1093660_1094662_-	Retron-type reverse transcriptase	NA	Q775D8	Bordetella_phage	59.6	1.7e-114
WP_127815110.1|1094960_1095335_-	diversity-generating retroelement protein Avd	NA	Q775D7	Bordetella_phage	87.9	6.4e-59
WP_165553828.1|1095363_1096521_-	hypothetical protein	NA	G8CLA7	Synechococcus_phage	38.3	3.7e-49
WP_165553830.1|1096536_1097757_-	hypothetical protein	NA	A0A2I7QLA8	Vibrio_phage	32.3	3.4e-08
WP_165553832.1|1097819_1105712_-	hypothetical protein	NA	Q775D4	Bordetella_phage	27.3	2.0e-40
WP_165553834.1|1105711_1107484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553836.1|1107493_1108171_-	hypothetical protein	NA	Q775D2	Bordetella_phage	31.4	5.6e-05
WP_165553838.1|1108234_1110556_-	hypothetical protein	NA	Q775D1	Bordetella_phage	45.1	7.7e-179
WP_165553839.1|1110545_1111148_-	hypothetical protein	NA	K4NZ40	Pseudomonas_phage	32.6	2.5e-20
WP_165553841.1|1111220_1111484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553843.1|1111494_1111959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553845.1|1111993_1112995_-	hypothetical protein	NA	Q6J1R9	Burkholderia_virus	51.1	5.3e-92
WP_165553847.1|1113007_1113748_-	hypothetical protein	NA	A0A193GYS7	Enterobacter_phage	41.5	7.5e-19
WP_165553849.1|1113704_1114073_-	endopeptidase	NA	A0A193GYH3	Enterobacter_phage	41.9	5.9e-09
WP_165553851.1|1114120_1114456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553853.1|1114465_1116205_-|head,tail	phage head-tail adapter protein	head,tail	T1S9Z7	Salmonella_phage	41.4	3.0e-111
WP_165553855.1|1116208_1116595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165555337.1|1116597_1117029_-	hypothetical protein	NA	Q775C1	Bordetella_phage	52.3	7.7e-24
WP_165553857.1|1117052_1117520_-	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	47.3	4.4e-25
WP_165553859.1|1119087_1119513_-|terminase	terminase	terminase	A0A0N9SJ94	Pseudomonas_phage	44.6	3.2e-14
1121361:1121377	attR	CGTCGCTGCGATCTTCG	NA	NA	NA	NA
>prophage 3
NZ_CP049736	Bordetella hinzii strain FY01 chromosome, complete genome	5045412	1123422	1135253	5045412		Bordetella_phage(76.92%)	18	NA	NA
WP_165553871.1|1123422_1124340_+	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	38.9	8.9e-38
WP_165553873.1|1124389_1125076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553875.1|1125072_1125255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553877.1|1125265_1125868_+	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	39.4	1.1e-33
WP_165553879.1|1125864_1126290_+	hypothetical protein	NA	Q775A8	Bordetella_phage	88.0	1.3e-63
WP_165553881.1|1126311_1126734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553883.1|1126730_1128035_+	DUF2800 domain-containing protein	NA	Q775A7	Bordetella_phage	56.3	1.4e-121
WP_165553885.1|1128031_1128259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553887.1|1128268_1128820_+	DUF2815 family protein	NA	Q775A5	Bordetella_phage	74.2	1.1e-72
WP_165553889.1|1128824_1129190_+	hypothetical protein	NA	A0A2K9VJU0	Escherichia_phage	39.1	2.0e-09
WP_165553891.1|1129186_1129375_+	hypothetical protein	NA	Q775A4	Bordetella_phage	74.2	8.2e-23
WP_165553893.1|1129371_1131465_+	DNA polymerase I	NA	Q775A3	Bordetella_phage	70.2	1.1e-288
WP_165553895.1|1131467_1131773_+	VRR-NUC domain-containing protein	NA	Q775A2	Bordetella_phage	66.0	9.5e-29
WP_165553897.1|1131769_1131988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553899.1|1131984_1133370_+	DEAD/DEAH box helicase	NA	Q774Z8	Bordetella_phage	70.2	2.6e-190
WP_165555338.1|1133645_1133885_+	DUF3310 domain-containing protein	NA	Q774Z7	Bordetella_phage	76.1	1.2e-23
WP_165553901.1|1133877_1134087_+	DUF1233 family excisionase	NA	Q774Z6	Bordetella_phage	89.9	2.1e-27
WP_165553903.1|1134062_1135253_+	DUF3596 domain-containing protein	NA	Q774Z5	Bordetella_phage	79.6	8.0e-188
>prophage 4
NZ_CP049736	Bordetella hinzii strain FY01 chromosome, complete genome	5045412	1138421	1201571	5045412	terminase,tail,protease,integrase,transposase,head	Bordetella_phage(56.76%)	67	1144629:1144647	1178089:1178107
WP_032961049.1|1138421_1139372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029579085.1|1139470_1141678_-	membrane protein	NA	NA	NA	NA	NA
WP_165553906.1|1142045_1143887_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	29.4	7.8e-57
WP_165553908.1|1143897_1144389_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_029579088.1|1144454_1145471_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
1144629:1144647	attL	GCCGGCCTGGAAGTCGCCG	NA	NA	NA	NA
WP_029579089.1|1145637_1146405_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_029579090.1|1146454_1146973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012418311.1|1147223_1147493_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_029579091.1|1147582_1149742_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_165555316.1|1149886_1150081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553300.1|1150191_1151559_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.3	9.3e-31
WP_029579092.1|1151755_1152484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553910.1|1152501_1152912_-	RidA family protein	NA	NA	NA	NA	NA
WP_165555339.1|1152901_1154050_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_165553912.1|1154077_1155079_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_165553914.1|1155121_1155769_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_032954906.1|1155892_1156798_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029579099.1|1156966_1158184_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_165553917.1|1158177_1158894_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_029579101.1|1158918_1159263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165555340.1|1159839_1160925_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	57.6	3.1e-106
WP_165553919.1|1160934_1161165_-	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	52.5	5.2e-11
WP_165555341.1|1161157_1161328_-	DUF3310 domain-containing protein	NA	Q774Z7	Bordetella_phage	83.0	9.0e-21
WP_165555342.1|1161623_1162967_-	DEAD/DEAH box helicase	NA	Q774Z8	Bordetella_phage	67.3	5.0e-170
WP_165553921.1|1163056_1163563_-	class I SAM-dependent methyltransferase	NA	A0A0N7IRF6	Acinetobacter_phage	61.3	1.4e-56
WP_165553923.1|1163559_1163931_-	VRR-NUC domain-containing protein	NA	Q775A2	Bordetella_phage	56.1	2.9e-27
WP_165553925.1|1164021_1166190_-	DNA polymerase I	NA	Q775A3	Bordetella_phage	68.6	1.3e-281
WP_165553927.1|1166186_1166555_-	hypothetical protein	NA	E1XUC6	Salmonella_phage	40.9	1.3e-11
WP_165553929.1|1166772_1167219_-	hypothetical protein	NA	A0A2H4J3Y5	uncultured_Caudovirales_phage	67.5	2.4e-36
WP_127815078.1|1167229_1167823_-	DUF2815 family protein	NA	Q6J1N9	Burkholderia_virus	45.3	6.8e-31
WP_165553930.1|1167834_1168041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553932.1|1168037_1169345_-	DUF2800 domain-containing protein	NA	Q775A7	Bordetella_phage	63.7	1.8e-145
WP_165553934.1|1169337_1170078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553936.1|1170088_1170559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553938.1|1170598_1171366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553940.1|1171362_1171503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553942.1|1171657_1171939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553944.1|1171949_1172273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165553946.1|1172269_1172653_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165553948.1|1172738_1172993_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165553949.1|1172989_1173904_+	DNA cytosine methyltransferase	NA	A0A088FRI5	Mycobacterium_phage	43.4	3.7e-36
WP_165553951.1|1173900_1176174_+	replication protein	NA	B6SCY1	Bacteriophage	54.2	2.9e-122
WP_165553953.1|1176656_1177193_+|terminase	terminase	terminase	Q775B8	Bordetella_phage	54.5	1.3e-36
WP_165553955.1|1177189_1178800_+|terminase	terminase	terminase	Q775B9	Bordetella_phage	78.9	4.9e-257
1178089:1178107	attR	CGGCGACTTCCAGGCCGGC	NA	NA	NA	NA
WP_165553957.1|1178840_1179305_+	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	59.5	5.2e-42
WP_165553959.1|1179301_1179766_+	hypothetical protein	NA	Q775C1	Bordetella_phage	64.9	2.4e-47
WP_165553962.1|1179768_1180176_+	hypothetical protein	NA	Q775C2	Bordetella_phage	89.7	4.0e-06
WP_165553964.1|1180185_1181850_+|head,tail	phage head-tail adapter protein	head,tail	T1S9Z7	Salmonella_phage	46.4	7.6e-136
WP_165553966.1|1181861_1182194_+	hypothetical protein	NA	Q775C4	Bordetella_phage	75.0	2.7e-37
WP_165553968.1|1182237_1182582_+	endopeptidase	NA	Q775C5	Bordetella_phage	51.3	7.5e-22
WP_165553970.1|1182541_1183231_+|protease	protease	protease	Q775C6	Bordetella_phage	59.2	1.8e-43
WP_165553972.1|1183243_1184260_+	hypothetical protein	NA	Q6J1R9	Burkholderia_virus	71.1	6.9e-140
WP_165553974.1|1184280_1184727_+	hypothetical protein	NA	W6MVK6	Pseudomonas_phage	41.6	7.4e-22
WP_165553976.1|1184738_1184927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553978.1|1185010_1185661_+	hypothetical protein	NA	Q775D0	Bordetella_phage	58.3	6.1e-65
WP_165553980.1|1185660_1187709_+	hypothetical protein	NA	Q775D1	Bordetella_phage	82.7	0.0e+00
WP_165553982.1|1188485_1191161_+	hypothetical protein	NA	A0A193GYI3	Enterobacter_phage	26.8	4.6e-66
WP_165553984.1|1191160_1193017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165553986.1|1193009_1195460_+	hypothetical protein	NA	A0A2H4J9B2	uncultured_Caudovirales_phage	43.2	4.0e-178
WP_165553988.1|1195520_1197041_+	hypothetical protein	NA	Q775D5	Bordetella_phage	48.9	8.4e-41
WP_165553990.1|1197057_1198218_+	hypothetical protein	NA	G8CLA7	Synechococcus_phage	39.1	6.0e-39
WP_127815110.1|1198246_1198621_+	diversity-generating retroelement protein Avd	NA	Q775D7	Bordetella_phage	87.9	6.4e-59
WP_165555343.1|1198907_1199894_+	Retron-type reverse transcriptase	NA	Q775D8	Bordetella_phage	64.1	2.0e-128
WP_165553992.1|1199874_1200120_+	hypothetical protein	NA	Q775D9	Bordetella_phage	67.1	1.2e-26
WP_165553993.1|1200130_1200466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165555344.1|1200465_1200963_+	glycoside hydrolase family 108 protein	NA	Q775E1	Bordetella_phage	74.2	1.9e-66
WP_165553995.1|1200965_1201571_+	hypothetical protein	NA	Q775E2	Bordetella_phage	76.1	2.5e-65
