The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	174933	183244	1314822	tRNA	Brochothrix_phage(33.33%)	7	NA	NA
WP_164799315.1|174933_177348_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	63.6	4.7e-304
WP_164799316.1|177369_178998_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_006732759.1|179021_179588_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	36.2	5.2e-20
WP_164799557.1|180078_180771_-	helix-turn-helix domain-containing protein	NA	D7RWF2	Brochothrix_phage	39.8	2.9e-33
WP_006730350.1|181422_181740_-	helix-turn-helix transcriptional regulator	NA	A0A141E255	Streptococcus_phage	59.6	1.1e-24
WP_102695542.1|181782_182502_-	helix-turn-helix domain-containing protein	NA	U3PIS7	Lactobacillus_phage	44.7	5.0e-44
WP_006730335.1|182575_183244_-	LexA family transcriptional regulator	NA	D7RWL5	Brochothrix_phage	41.5	4.1e-40
>prophage 2
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	395456	426801	1314822	portal,tail,head,integrase,terminase	Lactobacillus_prophage(36.0%)	44	393628:393643	428550:428565
393628:393643	attL	TAAGTCATCTTTGGTA	NA	NA	NA	NA
WP_164799362.1|395456_396578_-|integrase	site-specific integrase	integrase	Q6SEA7	Lactobacillus_prophage	48.3	3.3e-95
WP_006731479.1|396714_397179_+	SocA family protein	NA	A0A0N9SGM1	Paenibacillus_phage	29.4	6.4e-08
WP_102878168.1|397181_397703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006731485.1|397960_398335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164799363.1|398536_399037_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_164799364.1|399094_399787_-	helix-turn-helix domain-containing protein	NA	D7RWF2	Brochothrix_phage	39.1	2.1e-39
WP_006735559.1|400235_400466_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFH4	Staphylococcus_phage	53.1	7.2e-13
WP_006732601.1|400587_400725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006735549.1|400726_400867_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_006731472.1|400949_401093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006731493.1|401242_401383_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_164799365.1|401385_401793_+	hypothetical protein	NA	A0A1X9I5P1	Streptococcus_phage	37.4	5.2e-14
WP_164799366.1|401789_402587_+	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	68.5	5.0e-93
WP_164799367.1|402613_402982_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_164799115.1|402997_403153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799368.1|403171_403321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799369.1|403432_403801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799370.1|403787_404669_+	DUF1351 domain-containing protein	NA	Q6SE94	Lactobacillus_prophage	38.0	3.0e-51
WP_164799371.1|404671_405445_+	hypothetical protein	NA	Q6SEE8	Lactobacillus_prophage	68.2	2.2e-93
WP_164799372.1|405456_406413_+	hypothetical protein	NA	A0A2I6PDA9	Staphylococcus_phage	42.3	3.9e-36
WP_164799373.1|406540_407101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799374.1|407087_407795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799375.1|407791_408250_+	RusA family crossover junction endodeoxyribonuclease	NA	X2CXX1	Lactobacillus_phage	50.4	1.7e-29
WP_164799376.1|408250_408451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799559.1|408468_408951_+	hypothetical protein	NA	Q20DE6	Lactobacillus_phage	56.1	1.1e-42
WP_006729801.1|409709_409898_+	addiction module toxin, HicA family	NA	NA	NA	NA	NA
WP_006729802.1|409947_410343_+	antitoxin HicB	NA	I3NLB2	Bifidobacterium_phage	28.2	1.3e-06
WP_102878157.1|410402_410909_+|terminase	small terminase subunit	terminase	A9D9R6	Lactobacillus_prophage	73.4	9.9e-63
WP_164799377.1|412109_413531_+|portal	phage portal protein	portal	Q6SED7	Lactobacillus_prophage	58.6	1.3e-155
WP_006729809.1|415113_415302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102878154.1|415301_415484_+	histidine kinase	NA	NA	NA	NA	NA
WP_164799378.1|415551_415770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799379.1|416000_416597_+	DUF4355 domain-containing protein	NA	Q6SED3	Lactobacillus_prophage	56.6	2.6e-46
WP_164799380.1|416615_417530_+	hypothetical protein	NA	Q6SED2	Lactobacillus_prophage	70.7	1.3e-118
WP_102878231.1|417703_418054_+|head,tail	phage head-tail connector protein	head,tail	Q6SED1	Lactobacillus_prophage	67.0	7.1e-36
WP_164799381.1|418037_418349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102878229.1|418341_418725_+	hypothetical protein	NA	A0A097BY98	Enterococcus_phage	40.0	2.3e-19
WP_164799382.1|418721_419099_+	hypothetical protein	NA	A0A0P0I3C8	Lactobacillus_phage	27.0	1.1e-07
WP_164799383.1|419112_419724_+|tail	phage tail protein	tail	A0A0A1ELH3	Lactobacillus_phage	65.2	2.2e-64
WP_164799384.1|419794_420136_+	hypothetical protein	NA	A0A0A1ER95	Lactobacillus_phage	46.4	1.2e-16
WP_164799385.1|420228_420567_+	hypothetical protein	NA	A0A0P0I7N9	Lactobacillus_phage	58.4	2.6e-27
WP_164799386.1|420566_423890_+|tail	phage tail tape measure protein	tail	G8FV37	Pediococcus_virus	49.0	9.9e-103
WP_164799387.1|423889_424714_+|tail	phage tail protein	tail	A0A0P0IJR2	Lactobacillus_phage	36.1	1.4e-13
WP_164799388.1|424710_426801_+	hypothetical protein	NA	A3F656	Streptococcus_phage	29.6	8.0e-34
428550:428565	attR	TACCAAAGATGACTTA	NA	NA	NA	NA
>prophage 3
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	540825	549122	1314822		Yellowstone_lake_phycodnavirus(16.67%)	7	NA	NA
WP_164799407.1|540825_541959_+	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	27.7	1.7e-25
WP_164799408.1|542148_543987_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	37.1	8.4e-19
WP_009310256.1|543988_544675_+	class A sortase	NA	NA	NA	NA	NA
WP_160807859.1|544671_546957_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.5	5.6e-73
WP_006730035.1|547052_547580_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	39.0	6.7e-22
WP_006732879.1|547643_548600_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	58.0	1.0e-108
WP_164799409.1|548621_549122_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	37.4	3.2e-21
>prophage 4
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	606844	616256	1314822	tRNA	unidentified_phage(16.67%)	9	NA	NA
WP_006730861.1|606844_608038_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	46.3	1.0e-41
WP_006729975.1|608136_608802_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_164799419.1|608928_609780_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.7	8.1e-17
WP_006730873.1|609788_610016_+	YozE family protein	NA	NA	NA	NA	NA
WP_006730887.1|610020_611403_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	27.1	1.2e-09
WP_006730880.1|611616_612456_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_164799420.1|612452_613205_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	39.3	1.3e-26
WP_006733080.1|613253_614099_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	34.1	1.4e-29
WP_006736530.1|614168_616256_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	34.3	4.8e-95
>prophage 5
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	849081	869167	1314822	integrase	Streptococcus_phage(94.12%)	20	849024:849041	852873:852890
849024:849041	attL	CTTTCCTTTATGGAAAGA	NA	NA	NA	NA
WP_006730188.1|849081_850389_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	47.6	1.8e-92
WP_006729203.1|850985_851459_+	universal stress protein	NA	NA	NA	NA	NA
WP_001291561.1|851643_852861_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|852942_853146_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
852873:852890	attR	CTTTCCTTTATGGAAAGA	NA	NA	NA	NA
WP_035508082.1|853606_853837_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	98.7	3.0e-35
WP_000804885.1|853833_854256_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|854760_855114_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|855173_855341_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_164799469.1|855459_857379_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.8	0.0e+00
WP_001791010.1|857394_857511_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224319.1|857755_858688_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
WP_000769868.1|858684_859686_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|859682_861860_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|864294_864801_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_164799470.1|864775_865273_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	99.4	6.4e-91
WP_001009056.1|865389_865611_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000879507.1|866881_867034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|867036_868422_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|868450_868837_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|868852_869167_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 6
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	987544	998521	1314822		Bacillus_virus(28.57%)	8	NA	NA
WP_164799496.1|987544_989773_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.7	3.2e-129
WP_006729622.1|989874_990486_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	41.1	6.6e-21
WP_009310443.1|990488_991100_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_006729620.1|991315_992458_-	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	32.4	1.9e-61
WP_164799497.1|992605_995269_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.5	4.1e-75
WP_006735326.1|995454_996291_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	4.9e-67
WP_006729617.1|996293_997772_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.1	3.8e-107
WP_006729616.1|997822_998521_-	glycosyl transferase	NA	A0A2K9L2U7	Tupanvirus	27.7	1.4e-11
>prophage 7
NZ_CP049231	Lactobacillus iners strain C0254C1 chromosome, complete genome	1314822	1031370	1044371	1314822		Streptococcus_phage(37.5%)	9	NA	NA
WP_006729584.1|1031370_1031955_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.8	2.6e-51
WP_164799503.1|1032053_1033322_-	AAA domain-containing protein	NA	M1F3L1	Cronobacter_phage	27.6	1.0e-07
WP_006729582.1|1033337_1034834_-	hypothetical protein	NA	A0A191VYN2	Roseobacter_phage	22.6	4.3e-05
WP_006731198.1|1034826_1035771_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	37.1	7.0e-46
WP_006729580.1|1035770_1036805_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	52.7	3.5e-91
WP_006729579.1|1036817_1037693_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.3	1.0e-06
WP_164799504.1|1037744_1040561_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.9	1.7e-297
WP_006733565.1|1040588_1042586_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_164799505.1|1042643_1044371_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	46.0	1.2e-139
