assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011058735.1_ASM1105873v1	NZ_CP049226	Lactobacillus iners strain C0011D1 chromosome, complete genome	1	376963-377972	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG	Type I-E	GTATTTCCCGCACATGCGGGGGTGATCC,GTATTTCCCGCACATGCGGGGGTGATCC,GTATTTCCCGCACATGCGGGGGTGATCCT	28,28,29	2	2	377788-377820|377789-377820	NZ_CP049227.1_89293-89325|NZ_CP049227.1_89294-89325	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	15,16,16	16	TypeI-E	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,cas14k	NA,NA|62aa|down_0|NZ_CP049226.1_378152_378338_+	NA|260aa|up_9|NZ_CP049226.1_366039_366819_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|203aa|up_8|NZ_CP049226.1_366818_367427_+	pfam07314, DUF1461, Protein of unknown function (DUF1461)	cas3|918aa|up_7|NZ_CP049226.1_367546_370300_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|563aa|up_6|NZ_CP049226.1_370286_371975_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|196aa|up_5|NZ_CP049226.1_371984_372572_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|359aa|up_4|NZ_CP049226.1_372574_373651_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP049226.1_373667_374405_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|220aa|up_2|NZ_CP049226.1_374413_375073_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|up_1|NZ_CP049226.1_375069_376008_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|298aa|up_0|NZ_CP049226.1_376008_376902_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|62aa|down_0|NZ_CP049226.1_378152_378338_+	NA	NA|215aa|down_1|NZ_CP049226.1_378466_379111_-	PRK10847, PRK10847, DedA family protein	NA|316aa|down_2|NZ_CP049226.1_379138_380086_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_3|NZ_CP049226.1_385757_387131_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|865aa|down_4|NZ_CP049226.1_387460_390055_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|400aa|down_5|NZ_CP049226.1_390220_391420_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|330aa|down_6|NZ_CP049226.1_391477_392467_-	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|365aa|down_7|NZ_CP049226.1_392629_393724_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|288aa|down_8|NZ_CP049226.1_393723_394587_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|273aa|down_9|NZ_CP049226.1_394588_395407_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_011058735.1_ASM1105873v1	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	1	1730-1845	1	CRISPRCasFinder	no		cas14k	Orphan	ATATGGTTATATATCACATGTATTAATG	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,cas14k	NA|212aa|up_1|NZ_CP049227.1_422_1058_+,NA|214aa|up_0|NZ_CP049227.1_1057_1699_+,NA|252aa|down_0|NZ_CP049227.1_1928_2684_+,NA|146aa|down_2|NZ_CP049227.1_4492_4930_+,NA|84aa|down_3|NZ_CP049227.1_4945_5197_+,NA|394aa|down_5|NZ_CP049227.1_8258_9440_+,NA|153aa|down_9|NZ_CP049227.1_12325_12784_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|119aa|up_2|NZ_CP049227.1_52_409_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|212aa|up_1|NZ_CP049227.1_422_1058_+	NA	NA|214aa|up_0|NZ_CP049227.1_1057_1699_+	NA	NA|252aa|down_0|NZ_CP049227.1_1928_2684_+	NA	NA|544aa|down_1|NZ_CP049227.1_2762_4394_+	pfam09726, Macoilin, Macoilin family	NA|146aa|down_2|NZ_CP049227.1_4492_4930_+	NA	NA|84aa|down_3|NZ_CP049227.1_4945_5197_+	NA	NA|944aa|down_4|NZ_CP049227.1_5422_8254_+	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|394aa|down_5|NZ_CP049227.1_8258_9440_+	NA	NA|62aa|down_6|NZ_CP049227.1_9629_9815_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|597aa|down_7|NZ_CP049227.1_9979_11770_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|174aa|down_8|NZ_CP049227.1_11750_12272_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|153aa|down_9|NZ_CP049227.1_12325_12784_+	NA
GCF_011058735.1_ASM1105873v1	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	2	9521-9619	2	CRISPRCasFinder	no		cas14k	Orphan	TTCACACGATTAACTCACGATTA	23	1	3	9544-9596|9544-9596|9544-9596	NZ_CP049226.1_167392-167340|NZ_CP049226.1_440372-440320|NZ_CP049226.1_577606-577554	NA	1	1	Orphan	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,cas14k	NA|212aa|up_7|NZ_CP049227.1_422_1058_+,NA|214aa|up_6|NZ_CP049227.1_1057_1699_+,NA|252aa|up_5|NZ_CP049227.1_1928_2684_+,NA|146aa|up_3|NZ_CP049227.1_4492_4930_+,NA|84aa|up_2|NZ_CP049227.1_4945_5197_+,NA|394aa|up_0|NZ_CP049227.1_8258_9440_+,NA|153aa|down_3|NZ_CP049227.1_12325_12784_+,NA|272aa|down_5|NZ_CP049227.1_14874_15690_+,NA|175aa|down_6|NZ_CP049227.1_15655_16180_+,NA|272aa|down_7|NZ_CP049227.1_16202_17018_+	NA|NA	NA	NA|119aa|up_8|NZ_CP049227.1_52_409_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|212aa|up_7|NZ_CP049227.1_422_1058_+	NA	NA|214aa|up_6|NZ_CP049227.1_1057_1699_+	NA	NA|252aa|up_5|NZ_CP049227.1_1928_2684_+	NA	NA|544aa|up_4|NZ_CP049227.1_2762_4394_+	pfam09726, Macoilin, Macoilin family	NA|146aa|up_3|NZ_CP049227.1_4492_4930_+	NA	NA|84aa|up_2|NZ_CP049227.1_4945_5197_+	NA	NA|944aa|up_1|NZ_CP049227.1_5422_8254_+	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|394aa|up_0|NZ_CP049227.1_8258_9440_+	NA	NA|62aa|down_0|NZ_CP049227.1_9629_9815_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|597aa|down_1|NZ_CP049227.1_9979_11770_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|174aa|down_2|NZ_CP049227.1_11750_12272_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|153aa|down_3|NZ_CP049227.1_12325_12784_+	NA	NA|556aa|down_4|NZ_CP049227.1_13012_14680_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|272aa|down_5|NZ_CP049227.1_14874_15690_+	NA	NA|175aa|down_6|NZ_CP049227.1_15655_16180_+	NA	NA|272aa|down_7|NZ_CP049227.1_16202_17018_+	NA	NA|529aa|down_8|NZ_CP049227.1_17417_19004_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|500aa|down_9|NZ_CP049227.1_19513_21013_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
GCF_011058735.1_ASM1105873v1	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	3	17043-17141	3	CRISPRCasFinder	no	cas14k	cas14k	Unclear	AAAATAATCGTGAGTTAATCGTG	23	1	2	17066-17118|17066-17118	NZ_CP049227.1_19305-19357|NZ_CP049227.1_19392-19444	NA	1	1	TypeV	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,cas14k	NA|394aa|up_8|NZ_CP049227.1_8258_9440_+,NA|153aa|up_4|NZ_CP049227.1_12325_12784_+,NA|272aa|up_2|NZ_CP049227.1_14874_15690_+,NA|175aa|up_1|NZ_CP049227.1_15655_16180_+,NA|272aa|up_0|NZ_CP049227.1_16202_17018_+,NA|112aa|down_2|NZ_CP049227.1_21309_21645_-,NA|355aa|down_6|NZ_CP049227.1_28299_29364_+,NA|344aa|down_7|NZ_CP049227.1_29382_30414_+,NA|429aa|down_8|NZ_CP049227.1_30415_31702_+,NA|173aa|down_9|NZ_CP049227.1_31829_32348_+	NA|944aa|up_9|NZ_CP049227.1_5422_8254_+	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|394aa|up_8|NZ_CP049227.1_8258_9440_+	NA	NA|62aa|up_7|NZ_CP049227.1_9629_9815_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|597aa|up_6|NZ_CP049227.1_9979_11770_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|174aa|up_5|NZ_CP049227.1_11750_12272_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|153aa|up_4|NZ_CP049227.1_12325_12784_+	NA	NA|556aa|up_3|NZ_CP049227.1_13012_14680_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|272aa|up_2|NZ_CP049227.1_14874_15690_+	NA	NA|175aa|up_1|NZ_CP049227.1_15655_16180_+	NA	NA|272aa|up_0|NZ_CP049227.1_16202_17018_+	NA	NA|529aa|down_0|NZ_CP049227.1_17417_19004_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|500aa|down_1|NZ_CP049227.1_19513_21013_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|112aa|down_2|NZ_CP049227.1_21309_21645_-	NA	NA|407aa|down_3|NZ_CP049227.1_21650_22871_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|1119aa|down_4|NZ_CP049227.1_23110_26467_+	pfam18202, TQ, T-Q ester bond containing domain	NA|417aa|down_5|NZ_CP049227.1_26842_28093_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|355aa|down_6|NZ_CP049227.1_28299_29364_+	NA	NA|344aa|down_7|NZ_CP049227.1_29382_30414_+	NA	NA|429aa|down_8|NZ_CP049227.1_30415_31702_+	NA	NA|173aa|down_9|NZ_CP049227.1_31829_32348_+	NA
