The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	457534	484871	1379123	integrase,portal,capsid,terminase	Streptococcus_phage(44.44%)	42	455170:455185	461470:461485
455170:455185	attL	ACTAATTGATCAATTA	NA	NA	NA	NA
WP_006737660.1|457534_458656_-|integrase	tyrosine-type recombinase/integrase	integrase	Q6SEA7	Lactobacillus_prophage	48.3	2.0e-95
WP_164799111.1|459214_459715_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_164799112.1|459772_460465_-	helix-turn-helix domain-containing protein	NA	D7RWF2	Brochothrix_phage	38.2	8.0e-39
WP_006735559.1|460913_461144_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFH4	Staphylococcus_phage	53.1	7.2e-13
WP_006732601.1|461243_461381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006737670.1|461382_461523_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
461470:461485	attR	TAATTGATCAATTAGT	NA	NA	NA	NA
WP_006731472.1|461604_461748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006731493.1|461897_462038_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_160807894.1|462040_462442_+	Bro-N domain-containing protein	NA	A0A1X9I5P1	Streptococcus_phage	43.4	1.1e-13
WP_164799113.1|462444_462852_+	Bro-N domain-containing protein	NA	A0A2K9V3K3	Faecalibacterium_phage	28.1	1.2e-05
WP_164799114.1|462848_463643_+	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	68.3	9.9e-94
WP_006731456.1|463726_464038_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_164799115.1|464053_464209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006735993.1|464742_464937_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_164799277.1|465079_466054_+	hypothetical protein	NA	Q4ZD94	Staphylococcus_virus	43.0	3.0e-39
WP_164799116.1|466179_466740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799117.1|466726_467434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799118.1|467430_467889_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A2D1GQ71	Lysinibacillus_phage	37.1	2.8e-16
WP_164799119.1|467888_468089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006732599.1|468110_468593_+	hypothetical protein	NA	Q20DE6	Lactobacillus_phage	58.1	4.4e-44
WP_164799120.1|469196_469340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799121.1|469552_469873_+	HNH endonuclease	NA	A0A1B1IMY5	Lactococcus_phage	71.0	1.9e-40
WP_164799278.1|469999_471298_+|portal	phage portal protein	portal	A0A141E171	Streptococcus_phage	60.2	1.0e-143
WP_164799279.1|471974_472358_+	MafB	NA	A0A1X9I626	Streptococcus_phage	51.6	1.4e-29
WP_006735983.1|472326_472527_+	hypothetical protein	NA	M1Q1V7	Streptococcus_phage	78.5	7.9e-24
WP_006729812.1|472729_473035_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1X9I661	Streptococcus_phage	63.7	6.2e-28
WP_006735989.1|473018_473189_-	hypothetical protein	NA	A0A2H4J2N9	uncultured_Caudovirales_phage	69.1	5.9e-12
WP_164799122.1|473567_474953_+|terminase	terminase	terminase	A0A1P8BMS5	Lactococcus_phage	62.9	2.1e-176
WP_006736002.1|475100_475553_+	hypothetical protein	NA	A0A126GGH5	Streptococcus_phage	28.6	8.1e-08
WP_006735961.1|475571_476474_+|capsid	phage major capsid protein	capsid	A0A141E166	Streptococcus_phage	71.8	4.9e-121
WP_006736000.1|476485_476629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164799123.1|476651_477050_+	hypothetical protein	NA	A0A1P8BMQ2	Lactococcus_phage	67.5	7.3e-37
WP_006735971.1|477068_477401_+	hypothetical protein	NA	Q7Y4I1	Streptococcus_phage	43.3	5.2e-20
WP_164799124.1|477397_477652_+	hypothetical protein	NA	M1NS01	Streptococcus_phage	45.6	4.5e-08
WP_164799125.1|477644_477974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006736001.1|477989_478604_+	hypothetical protein	NA	M1PKG8	Streptococcus_phage	45.3	2.3e-37
WP_006736017.1|478596_478884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035519325.1|478895_479273_+	hypothetical protein	NA	E8ZDP6	Streptococcus_phage	48.8	2.2e-22
WP_006736008.1|479265_479796_+	hypothetical protein	NA	A0A1P8BMM1	Lactococcus_phage	55.3	2.0e-45
WP_006735979.1|480235_482128_+	hypothetical protein	NA	A0A141E161	Streptococcus_phage	35.2	1.6e-20
WP_006735988.1|482124_482853_+	hypothetical protein	NA	A0A0A8WHP7	Clostridium_phage	26.8	2.7e-13
WP_164799126.1|482849_484871_+	hypothetical protein	NA	A0A0A8WIC9	Clostridium_phage	30.9	2.3e-33
>prophage 2
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	598803	607100	1379123		Cafeteria_roenbergensis_virus(16.67%)	7	NA	NA
WP_006736862.1|598803_599937_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.6	7.4e-26
WP_006731694.1|600126_601965_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.0	6.4e-19
WP_009310256.1|601966_602653_+	class A sortase	NA	NA	NA	NA	NA
WP_009310258.1|602649_604935_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.3	1.6e-72
WP_164798689.1|605030_605558_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	39.7	2.3e-22
WP_102695386.1|605621_606578_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	57.6	1.3e-108
WP_006734110.1|606599_607100_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.2	6.4e-22
>prophage 3
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	664829	678465	1379123	tRNA,protease	unidentified_phage(12.5%)	13	NA	NA
WP_006730861.1|664829_666023_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	46.3	1.0e-41
WP_006729975.1|666120_666786_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_164799154.1|666912_667764_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	41.1	8.1e-17
WP_006731940.1|667772_668000_+	YozE family protein	NA	NA	NA	NA	NA
WP_164799155.1|668004_669387_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.8	1.5e-12
WP_006730880.1|669600_670440_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_006735970.1|670436_671189_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	39.3	1.3e-26
WP_006731930.1|671237_672083_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	34.1	4.8e-30
WP_164799156.1|672152_674240_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	35.5	8.1e-95
WP_006730884.1|674289_675603_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_006730858.1|675605_676529_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	27.6	3.0e-25
WP_006729965.1|676532_677057_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_009310273.1|677067_678465_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IEP8	Erwinia_phage	24.4	1.8e-29
>prophage 4
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	911196	931284	1379123	integrase	Streptococcus_phage(94.12%)	20	911139:911156	914988:915005
911139:911156	attL	CTTTCCTTTATGGAAAGA	NA	NA	NA	NA
WP_006730188.1|911196_912504_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	47.6	1.8e-92
WP_006730099.1|913100_913574_+	universal stress protein	NA	NA	NA	NA	NA
WP_102215274.1|913758_914976_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	1.4e-232
WP_000814511.1|915057_915261_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
914988:915005	attR	CTTTCCTTTATGGAAAGA	NA	NA	NA	NA
WP_000857133.1|915721_915952_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|915948_916371_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_164799214.1|916875_917229_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	99.1	1.5e-57
WP_000336323.1|917288_917456_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|917574_919494_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001791010.1|919509_919626_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|919870_920806_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|920802_921804_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|921800_923978_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|923980_926428_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|926411_926918_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_001009056.1|927506_927728_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000879507.1|928998_929151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164799215.1|929153_930539_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	99.8	5.5e-265
WP_000985015.1|930567_930954_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_006734372.1|930969_931284_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	99.0	2.6e-53
>prophage 5
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	1063877	1074854	1379123		Bacillus_virus(28.57%)	8	NA	NA
WP_006730592.1|1063877_1066106_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.7	1.9e-129
WP_006730630.1|1066207_1066819_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	41.1	6.6e-21
WP_006732029.1|1066821_1067433_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_164799232.1|1067648_1068791_-	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	32.4	2.5e-61
WP_164799233.1|1068938_1071602_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.4	8.3e-76
WP_006735326.1|1071787_1072624_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	4.9e-67
WP_006729617.1|1072626_1074105_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.1	3.8e-107
WP_006729616.1|1074155_1074854_-	glycosyl transferase	NA	A0A2K9L2U7	Tupanvirus	27.7	1.4e-11
>prophage 6
NZ_CP049225	Lactobacillus iners strain C0059G1 chromosome, complete genome	1379123	1107701	1120700	1379123		Streptococcus_phage(37.5%)	9	NA	NA
WP_006729584.1|1107701_1108286_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.8	2.6e-51
WP_006736301.1|1108394_1109651_-	AAA domain-containing protein	NA	M1F3L1	Cronobacter_phage	27.0	2.9e-07
WP_006736273.1|1109666_1111163_-	hypothetical protein	NA	A0A191VYN2	Roseobacter_phage	23.2	1.7e-06
WP_006731198.1|1111155_1112100_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	37.1	7.0e-46
WP_006729580.1|1112099_1113134_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	52.7	3.5e-91
WP_006729579.1|1113146_1114022_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.3	1.0e-06
WP_006736270.1|1114073_1116890_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.9	2.0e-298
WP_006733565.1|1116917_1118915_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_006736272.1|1118972_1120700_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	46.0	5.8e-139
