The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	417185	464440	1379823	terminase,capsid,head,tRNA,portal,integrase,tail	Lactobacillus_prophage(33.33%)	44	413588:413603	455721:455736
413588:413603	attL	ACAAGCCAAAATTAAA	NA	NA	NA	NA
WP_164798666.1|417185_417662_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_006735497.1|417739_418273_-	exonuclease	NA	M1PFD8	Streptococcus_phage	36.5	7.5e-21
WP_006730662.1|418386_419301_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_006733620.1|419355_420462_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.3	1.5e-34
WP_006737324.1|420448_421261_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_164798667.1|421257_422058_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_164798668.1|422054_423128_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_006729026.1|423166_424009_+	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_164798669.1|424005_424974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006729028.1|424997_426350_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_006729029.1|426540_428352_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	Q76DQ7	Chlorella_virus	38.2	1.3e-96
WP_006736808.1|428458_429982_+	membrane protein	NA	NA	NA	NA	NA
WP_006736809.1|429997_430396_+	CrcB family protein	NA	NA	NA	NA	NA
WP_006729032.1|430395_430746_+	protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	38.8	1.6e-11
WP_006731168.1|430797_431670_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA	NA
WP_006729034.1|431982_432714_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_006730667.1|432783_434019_-	cytosine deaminase	NA	NA	NA	NA	NA
WP_006732241.1|434030_435290_-	cytosine permease	NA	NA	NA	NA	NA
WP_006731149.1|435473_435920_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_006729038.1|435916_436348_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_006734930.1|436498_436990_+	acetyltransferase	NA	NA	NA	NA	NA
WP_006731738.1|445617_446592_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_164798670.1|446563_447559_+	type II secretion system protein F	NA	NA	NA	NA	NA
WP_006729045.1|447572_447899_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_080550276.1|447882_448314_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_006729047.1|448303_448522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006736043.1|448508_449000_+	competence protein ComGF	NA	NA	NA	NA	NA
WP_164798671.1|449247_450249_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_164798672.1|450259_451471_+	acetate kinase	NA	NA	NA	NA	NA
WP_006737660.1|452022_453144_-|integrase	tyrosine-type recombinase/integrase	integrase	Q6SEA7	Lactobacillus_prophage	48.3	2.0e-95
WP_006737543.1|454290_454860_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_006729801.1|455553_455742_+	addiction module toxin, HicA family	NA	NA	NA	NA	NA
455721:455736	attR	ACAAGCCAAAATTAAA	NA	NA	NA	NA
WP_006729802.1|455791_456187_+	antitoxin HicB	NA	I3NLB2	Bifidobacterium_phage	28.2	1.3e-06
WP_164798673.1|456291_456759_+|terminase	small terminase subunit	terminase	A9D9R6	Lactobacillus_prophage	59.5	6.5e-45
WP_006738059.1|456748_457978_+|terminase	PBSX family phage terminase large subunit	terminase	A9D9R9	Lactobacillus_prophage	58.7	4.6e-138
WP_006732591.1|457991_459422_+|portal	phage portal protein	portal	A0A0A1ER87	Lactobacillus_phage	45.5	2.8e-110
WP_006730975.1|459414_461007_+|capsid	minor capsid protein	capsid	Q6SED6	Lactobacillus_prophage	32.6	2.5e-43
WP_006730988.1|461011_461296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006730954.1|461329_461821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006730930.1|461817_462075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006730958.1|462151_462412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006738119.1|462527_463133_+	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_006732598.1|463146_464019_+	hypothetical protein	NA	A0A0A1ELG8	Lactobacillus_phage	55.7	9.0e-80
WP_006730973.1|464035_464440_+|head,tail	phage head-tail connector protein	head,tail	A0A097BY74	Leuconostoc_phage	55.7	5.0e-25
>prophage 2
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	577119	585416	1379823		Yellowstone_lake_phycodnavirus(16.67%)	7	NA	NA
WP_006731699.1|577119_578253_+	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	27.4	3.7e-25
WP_006731694.1|578442_580281_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.0	6.4e-19
WP_009310256.1|580282_580969_+	class A sortase	NA	NA	NA	NA	NA
WP_164798688.1|580965_583251_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.3	1.6e-72
WP_164798689.1|583346_583874_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	39.7	2.3e-22
WP_102695386.1|583937_584894_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	57.6	1.3e-108
WP_006734110.1|584915_585416_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.2	6.4e-22
>prophage 3
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	643149	656783	1379823	tRNA,protease	unidentified_phage(12.5%)	13	NA	NA
WP_006734094.1|643149_644343_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	46.3	1.0e-41
WP_006729975.1|644438_645104_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_006732554.1|645230_646082_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	41.1	8.1e-17
WP_006732550.1|646090_646318_+	YozE family protein	NA	NA	NA	NA	NA
WP_164798702.1|646322_647705_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	3.3e-12
WP_006731946.1|647918_648758_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_006731927.1|648754_649507_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	39.6	2.0e-27
WP_006732552.1|649555_650401_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	34.1	8.3e-30
WP_006735030.1|650470_652558_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	35.5	1.1e-94
WP_102695364.1|652607_653921_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_164798703.1|653923_654847_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	27.2	5.1e-25
WP_164798704.1|654850_655375_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_009310273.1|655385_656783_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IEP8	Erwinia_phage	24.4	1.8e-29
>prophage 4
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	903232	924732	1379823	transposase	Streptococcus_phage(89.47%)	21	NA	NA
WP_000814511.1|903232_903436_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|903896_904127_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|904123_904546_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001240982.1|905345_908264_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|908267_908822_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001038790.1|909176_909914_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001814874.1|910038_910122_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_000336323.1|910734_910902_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_164798750.1|911020_912940_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.2	0.0e+00
WP_001791010.1|912955_913072_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|913316_914252_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|914248_915250_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|915246_917424_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_164798751.1|917426_919874_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.6	0.0e+00
WP_006731904.1|919857_920364_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.4	2.5e-90
WP_164798752.1|920338_920836_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	99.4	2.9e-91
WP_001009056.1|920952_921174_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|921216_922422_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000813488.1|922601_923987_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|924015_924402_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|924417_924732_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 5
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	1060494	1071470	1379823		Bacillus_virus(28.57%)	8	NA	NA
WP_006737851.1|1060494_1062723_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.7	1.9e-129
WP_006729622.1|1062824_1063436_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	41.1	6.6e-21
WP_164798792.1|1063438_1064050_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_006729620.1|1064265_1065408_-	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	32.4	1.9e-61
WP_164798794.1|1065555_1068219_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.1	9.1e-75
WP_006729618.1|1068403_1069240_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	3.7e-67
WP_006731299.1|1069242_1070721_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	2.9e-107
WP_006729616.1|1070771_1071470_-	glycosyl transferase	NA	A0A2K9L2U7	Tupanvirus	27.7	1.4e-11
>prophage 6
NZ_CP049223	Lactobacillus iners strain C0094A1 chromosome, complete genome	1379823	1105948	1118942	1379823		Streptococcus_phage(37.5%)	9	NA	NA
WP_006729584.1|1105948_1106533_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.8	2.6e-51
WP_102215315.1|1106631_1107897_-	AAA domain-containing protein	NA	M1F3L1	Cronobacter_phage	27.6	1.3e-07
WP_164798805.1|1107912_1109409_-	hypothetical protein	NA	A0A191VYN2	Roseobacter_phage	22.9	1.1e-05
WP_035511949.1|1109401_1110346_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	37.1	1.6e-45
WP_006729580.1|1110345_1111380_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	52.7	3.5e-91
WP_009310458.1|1111392_1112268_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.3	7.8e-07
WP_164798807.1|1112315_1115132_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.8	8.5e-297
WP_006733565.1|1115159_1117157_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_006736353.1|1117214_1118942_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	45.8	7.6e-139
>prophage 1
NZ_CP049224	Lactobacillus iners strain C0094A1 plasmid pC0094A1, complete sequence	94433	16413	70394	94433	transposase	Bacillus_virus(60.0%)	44	NA	NA
WP_164798924.1|16413_17328_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_164798925.1|17425_18280_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_164798926.1|18665_19925_+	M23 family metallopeptidase	NA	Q6SEC2	Lactobacillus_prophage	42.9	1.6e-24
WP_164798927.1|19938_20574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006734920.1|20573_21215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798928.1|21349_22675_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	G3MB42	Bacillus_virus	36.9	2.3e-55
WP_164798929.1|22993_23776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798930.1|23855_27014_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_164798931.1|27113_27551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102215581.1|27567_27819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798932.1|28047_30891_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_164798933.1|30892_32074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006735178.1|32163_32979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157750144.1|33049_33217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164798934.1|33427_34756_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	G3MB42	Bacillus_virus	36.6	5.6e-57
WP_164798935.1|34830_36135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164798936.1|36330_37989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006734626.1|38726_40226_+	ATPase AAA	NA	NA	NA	NA	NA
WP_164798937.1|40522_40858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164798938.1|40863_42084_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_164798939.1|42331_45892_+	VaFE repeat-containing surface-anchored protein	NA	NA	NA	NA	NA
WP_164798940.1|46039_47104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798941.1|47122_48154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798942.1|48155_49442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006734630.1|49572_50091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798943.1|50244_51573_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	G3MB42	Bacillus_virus	36.8	2.5e-57
WP_006734667.1|51859_52420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006734660.1|52556_52838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798944.1|53063_54569_+	DUF3854 domain-containing protein	NA	NA	NA	NA	NA
WP_164798945.1|55051_55222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798946.1|55387_56218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145999006.1|56313_57129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102215560.1|57159_58113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798947.1|58242_58665_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	46.2	2.4e-30
WP_164798948.1|58757_58928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102215558.1|59023_59242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798949.1|59370_59790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798950.1|59833_60208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798951.1|60219_60555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798952.1|60623_61676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798953.1|61688_63938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798954.1|63949_68428_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_157750137.1|68437_69157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164798955.1|69521_70394_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
