assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045855.1_ASM1104585v1	NZ_CP047352	Proteus mirabilis strain ZA25 chromosome, complete genome	1	177659-177750	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATAGCTTAGAAAAATAAGTACTAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|83aa|down_1|NZ_CP047352.1_178071_178320_-	NA|113aa|up_9|NZ_CP047352.1_166069_166408_+	PRK11027, PRK11027, hypothetical protein; Provisional	NA|511aa|up_8|NZ_CP047352.1_166455_167988_-	PRK09862, PRK09862, ATP-dependent protease	NA|34aa|up_7|NZ_CP047352.1_168432_168534_+	PRK10424, PRK10424, ilv operon leader peptide	NA|550aa|up_6|NZ_CP047352.1_168663_170313_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|93aa|up_5|NZ_CP047352.1_170309_170588_+	PRK11152, ilvM, acetolactate synthase 2 small subunit	NA|309aa|up_4|NZ_CP047352.1_170598_171525_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|617aa|up_3|NZ_CP047352.1_171597_173448_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|525aa|up_2|NZ_CP047352.1_173451_175026_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|296aa|up_1|NZ_CP047352.1_175011_175899_-	PRK11716, PRK11716, HTH-type transcriptional activator IlvY	NA|492aa|up_0|NZ_CP047352.1_176071_177547_+	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated	NA|90aa|down_0|NZ_CP047352.1_177801_178071_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|83aa|down_1|NZ_CP047352.1_178071_178320_-	NA	NA|674aa|down_2|NZ_CP047352.1_178492_180514_+	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional	NA|503aa|down_3|NZ_CP047352.1_180588_182097_-	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA|433aa|down_4|NZ_CP047352.1_182100_183399_-	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	NA|109aa|down_5|NZ_CP047352.1_183518_183845_+	PRK09381, trxA, thioredoxin TrxA	NA|420aa|down_6|NZ_CP047352.1_184406_185666_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|364aa|down_7|NZ_CP047352.1_186060_187152_+	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA|353aa|down_8|NZ_CP047352.1_187175_188234_+	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein	NA|377aa|down_9|NZ_CP047352.1_188363_189494_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
GCF_011045855.1_ASM1104585v1	NZ_CP047352	Proteus mirabilis strain ZA25 chromosome, complete genome	2	2519804-2519951	1	PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC	29	0	0	NA	NA	I-E	2	2	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|221aa|up_9|NZ_CP047352.1_2508537_2509200_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_8|NZ_CP047352.1_2509234_2509729_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_7|NZ_CP047352.1_2509869_2510325_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_6|NZ_CP047352.1_2510716_2511919_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_5|NZ_CP047352.1_2511996_2514141_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_4|NZ_CP047352.1_2514476_2514620_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_3|NZ_CP047352.1_2515017_2515161_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_2|NZ_CP047352.1_2515557_2515701_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP047352.1_2515931_2518331_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP047352.1_2518408_2519632_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP047352.1_2520009_2520306_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP047352.1_2520308_2521229_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP047352.1_2521229_2521907_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP047352.1_2521906_2522644_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP047352.1_2522656_2523691_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP047352.1_2523721_2524309_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP047352.1_2524295_2525894_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|down_7|NZ_CP047352.1_2525890_2528584_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_8|NZ_CP047352.1_2529538_2530795_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_9|NZ_CP047352.1_2530805_2531093_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_011045855.1_ASM1104585v1	NZ_CP047352	Proteus mirabilis strain ZA25 chromosome, complete genome	3	2528830-2529408	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|800aa|up_9|NZ_CP047352.1_2515931_2518331_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_8|NZ_CP047352.1_2518408_2519632_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_7|NZ_CP047352.1_2520009_2520306_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_6|NZ_CP047352.1_2520308_2521229_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_5|NZ_CP047352.1_2521229_2521907_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_4|NZ_CP047352.1_2521906_2522644_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_3|NZ_CP047352.1_2522656_2523691_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP047352.1_2523721_2524309_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP047352.1_2524295_2525894_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|up_0|NZ_CP047352.1_2525890_2528584_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_0|NZ_CP047352.1_2529538_2530795_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP047352.1_2530805_2531093_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP047352.1_2531122_2531566_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP047352.1_2531792_2532839_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP047352.1_2532835_2533378_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP047352.1_2533574_2534189_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP047352.1_2534253_2535159_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP047352.1_2535178_2535760_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP047352.1_2535881_2537399_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP047352.1_2537429_2537921_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_011045855.1_ASM1104585v1	NZ_CP047352	Proteus mirabilis strain ZA25 chromosome, complete genome	4	2792079-2792221	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|74aa|up_8|NZ_CP047352.1_2782749_2782971_+,NA|143aa|up_7|NZ_CP047352.1_2783038_2783467_+,NA|49aa|up_1|NZ_CP047352.1_2790016_2790163_+,NA|76aa|up_0|NZ_CP047352.1_2790163_2790391_+,NA	NA|300aa|up_9|NZ_CP047352.1_2781647_2782547_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_8|NZ_CP047352.1_2782749_2782971_+	NA	NA|143aa|up_7|NZ_CP047352.1_2783038_2783467_+	NA	NA|245aa|up_6|NZ_CP047352.1_2783634_2784369_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP047352.1_2784459_2785083_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP047352.1_2785251_2786112_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP047352.1_2786203_2786575_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP047352.1_2786745_2789343_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP047352.1_2790016_2790163_+	NA	NA|76aa|up_0|NZ_CP047352.1_2790163_2790391_+	NA	NA|476aa|down_0|NZ_CP047352.1_2804671_2806099_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|624aa|down_1|NZ_CP047352.1_2806300_2808172_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP047352.1_2808184_2810851_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|257aa|down_3|NZ_CP047352.1_2811014_2811785_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP047352.1_2812111_2812654_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP047352.1_2812864_2813308_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP047352.1_2813406_2814510_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP047352.1_2814506_2815706_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP047352.1_2815983_2816598_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP047352.1_2816600_2817353_+	PRK05287, PRK05287, cell division protein ZapD
GCF_011045855.1_ASM1104585v1	NZ_CP047352	Proteus mirabilis strain ZA25 chromosome, complete genome	5	3865403-3865542	3	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|68aa|up_8|NZ_CP047352.1_3859451_3859655_-,NA	NA|402aa|up_9|NZ_CP047352.1_3858090_3859296_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|68aa|up_8|NZ_CP047352.1_3859451_3859655_-	NA	NA|280aa|up_7|NZ_CP047352.1_3859782_3860622_-	PRK13753, PRK13753, dihydropteroate synthase; Provisional	NA|116aa|up_6|NZ_CP047352.1_3860615_3860963_-	pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein	NA|264aa|up_5|NZ_CP047352.1_3861126_3861918_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|158aa|up_4|NZ_CP047352.1_3861934_3862408_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|282aa|up_3|NZ_CP047352.1_3862404_3863250_-	pfam01909, NTP_transf_2, Nucleotidyltransferase domain	NA|179aa|up_2|NZ_CP047352.1_3863635_3864172_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP047352.1_3864286_3864613_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP047352.1_3864800_3865040_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|359aa|down_0|NZ_CP047352.1_3865951_3867028_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|564aa|down_1|NZ_CP047352.1_3867040_3868732_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|336aa|down_2|NZ_CP047352.1_3868780_3869788_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|376aa|down_3|NZ_CP047352.1_3869852_3870980_+	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|135aa|down_4|NZ_CP047352.1_3871054_3871459_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|96aa|down_5|NZ_CP047352.1_3871514_3871802_-	pfam10840, DUF2645, Protein of unknown function (DUF2645)	NA|271aa|down_6|NZ_CP047352.1_3871890_3872703_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|378aa|down_7|NZ_CP047352.1_3873577_3874711_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|469aa|down_8|NZ_CP047352.1_3874720_3876127_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|213aa|down_9|NZ_CP047352.1_3876219_3876858_-	PRK13756, PRK13756, TetR family transcriptional regulator
