assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	1	84508-84600	1	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Orphan	CTTCAAGGTGTAGTGTTGTTGACTG	25	1	1	84533-84575	NZ_CP047340.1_2368650-2368608	NA	1	1	Orphan	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA|144aa|up_8|NZ_CP047340.1_78085_78517_-,NA|221aa|up_4|NZ_CP047340.1_79935_80598_-,NA|290aa|up_3|NZ_CP047340.1_80584_81454_-,NA|150aa|down_8|NZ_CP047340.1_93882_94332_-	NA|1190aa|up_9|NZ_CP047340.1_74483_78053_+	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|144aa|up_8|NZ_CP047340.1_78085_78517_-	NA	NA|178aa|up_7|NZ_CP047340.1_78574_79108_-	PRK12860, PRK12860, flagellar transcriptional regulator FlhC	NA|100aa|up_6|NZ_CP047340.1_79104_79404_-	pfam05247, FlhD, Flagellar transcriptional activator (FlhD)	NA|183aa|up_5|NZ_CP047340.1_79400_79949_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|221aa|up_4|NZ_CP047340.1_79935_80598_-	NA	NA|290aa|up_3|NZ_CP047340.1_80584_81454_-	NA	NA|84aa|up_2|NZ_CP047340.1_81509_81761_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|216aa|up_1|NZ_CP047340.1_81878_82526_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|530aa|up_0|NZ_CP047340.1_82782_84372_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|115aa|down_0|NZ_CP047340.1_85152_85497_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|355aa|down_1|NZ_CP047340.1_85626_86691_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|down_2|NZ_CP047340.1_86683_87466_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|434aa|down_3|NZ_CP047340.1_87717_89019_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_4|NZ_CP047340.1_89539_90319_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|down_5|NZ_CP047340.1_90389_91712_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|409aa|down_6|NZ_CP047340.1_91778_93005_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|239aa|down_7|NZ_CP047340.1_93082_93799_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|150aa|down_8|NZ_CP047340.1_93882_94332_-	NA	NA|579aa|down_9|NZ_CP047340.1_95025_96762_+	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	2	710061-711468	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Type I-F	GTTCACTGCCACATAGGCAGCTTAGAAA,GTTCACTGCCACATAGGCAGCTTAGAAA,GTTCACTGCCACATAGGCAGCTTAGAAA	28,28,28	4	4	710089-710120|710209-710240|711229-711260|711289-711320	NZ_CP047340.1_2132501-2132532|NZ_CP047340.1_2130908-2130877|NZ_CP047340.1_1019557-1019526|NZ_CP047340.1_3983135-3983166	I-F:I-F:I-F	22,23,23	23	TypeI-F	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA,NA|70aa|down_6|NZ_CP047340.1_721302_721512_+,NA|118aa|down_7|NZ_CP047340.1_721580_721934_-	NA|128aa|up_9|NZ_CP047340.1_697518_697902_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|115aa|up_8|NZ_CP047340.1_698309_698654_-	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|135aa|up_7|NZ_CP047340.1_699110_699515_+	pfam07007, LprI, Lysozyme inhibitor LprI	NA|235aa|up_6|NZ_CP047340.1_699638_700343_-	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|474aa|up_5|NZ_CP047340.1_700344_701766_-	TIGR00273, Uncharacterized_electron_transport_protein_YkgF, iron-sulfur cluster-binding protein	NA|240aa|up_4|NZ_CP047340.1_701778_702498_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|509aa|up_3|NZ_CP047340.1_702617_704144_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|517aa|up_2|NZ_CP047340.1_706072_707623_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|193aa|up_1|NZ_CP047340.1_708130_708709_+	cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|296aa|up_0|NZ_CP047340.1_708799_709687_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	cas1|325aa|down_0|NZ_CP047340.1_711672_712647_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1128aa|down_1|NZ_CP047340.1_712643_716027_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|450aa|down_2|NZ_CP047340.1_716036_717386_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|331aa|down_3|NZ_CP047340.1_717382_718375_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|328aa|down_4|NZ_CP047340.1_718393_719377_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|215aa|down_5|NZ_CP047340.1_719386_720031_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|70aa|down_6|NZ_CP047340.1_721302_721512_+	NA	NA|118aa|down_7|NZ_CP047340.1_721580_721934_-	NA	NA|161aa|down_8|NZ_CP047340.1_722537_723020_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|145aa|down_9|NZ_CP047340.1_723176_723611_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	3	720183-721110	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Type I-F	GTCCACTGCCGCATAGGCAGCTTAGAAA,GTCCACTGCCGCATAGGCAGCTTAGAAA,GTCCACTGCCGCATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	15,15,15	15	TypeI-F	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA,NA|70aa|down_0|NZ_CP047340.1_721302_721512_+,NA|118aa|down_1|NZ_CP047340.1_721580_721934_-	NA|509aa|up_9|NZ_CP047340.1_702617_704144_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|517aa|up_8|NZ_CP047340.1_706072_707623_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|193aa|up_7|NZ_CP047340.1_708130_708709_+	cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|296aa|up_6|NZ_CP047340.1_708799_709687_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	cas1|325aa|up_5|NZ_CP047340.1_711672_712647_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1128aa|up_4|NZ_CP047340.1_712643_716027_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|450aa|up_3|NZ_CP047340.1_716036_717386_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|331aa|up_2|NZ_CP047340.1_717382_718375_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|328aa|up_1|NZ_CP047340.1_718393_719377_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|215aa|up_0|NZ_CP047340.1_719386_720031_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|70aa|down_0|NZ_CP047340.1_721302_721512_+	NA	NA|118aa|down_1|NZ_CP047340.1_721580_721934_-	NA	NA|161aa|down_2|NZ_CP047340.1_722537_723020_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|145aa|down_3|NZ_CP047340.1_723176_723611_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|98aa|down_4|NZ_CP047340.1_723603_723897_+	PRK01777, PRK01777, RnfH family protein	NA|121aa|down_5|NZ_CP047340.1_724103_724466_-	PRK11548, PRK11548, outer membrane protein assembly factor BamE	NA|554aa|down_6|NZ_CP047340.1_724579_726241_-	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|300aa|down_7|NZ_CP047340.1_726328_727228_-	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|204aa|down_8|NZ_CP047340.1_727328_727940_+	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|227aa|down_9|NZ_CP047340.1_728057_728738_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	4	818288-818440	4	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Orphan	TGACCTCTTGCATGCCATGCAAGCGCTCTCCCAACTGAGCTATAACCCCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA|177aa|up_7|NZ_CP047340.1_810269_810800_+,NA	NA|86aa|up_9|NZ_CP047340.1_808491_808749_-	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|318aa|up_8|NZ_CP047340.1_809080_810034_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|177aa|up_7|NZ_CP047340.1_810269_810800_+	NA	NA|257aa|up_6|NZ_CP047340.1_810913_811684_-	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|343aa|up_5|NZ_CP047340.1_811907_812936_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|676aa|up_4|NZ_CP047340.1_812991_815019_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|395aa|up_3|NZ_CP047340.1_815247_816432_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|72aa|up_2|NZ_CP047340.1_816598_816814_+	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|147aa|up_1|NZ_CP047340.1_816816_817257_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|251aa|up_0|NZ_CP047340.1_817440_818193_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|473aa|down_0|NZ_CP047340.1_818596_820015_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|101aa|down_1|NZ_CP047340.1_823275_823578_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|349aa|down_2|NZ_CP047340.1_824174_825221_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|710aa|down_3|NZ_CP047340.1_825233_827363_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|260aa|down_4|NZ_CP047340.1_827645_828425_-	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|193aa|down_5|NZ_CP047340.1_828421_829000_-	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|760aa|down_6|NZ_CP047340.1_829014_831294_-	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional	NA|268aa|down_7|NZ_CP047340.1_832167_832971_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|259aa|down_8|NZ_CP047340.1_833075_833852_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|68aa|down_9|NZ_CP047340.1_834517_834721_+	pfam10547, P22_AR_N, P22_AR N-terminal domain
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	5	2368557-2368647	5	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Orphan	AAGTATGTGACTAGTGCGAATGAAC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA,NA|111aa|down_4|NZ_CP047340.1_2372028_2372361_-	NA|228aa|up_9|NZ_CP047340.1_2358684_2359368_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|255aa|up_8|NZ_CP047340.1_2359360_2360125_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|388aa|up_7|NZ_CP047340.1_2360099_2361263_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|346aa|up_6|NZ_CP047340.1_2361262_2362300_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|425aa|up_5|NZ_CP047340.1_2362403_2363678_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|330aa|up_4|NZ_CP047340.1_2363754_2364744_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|274aa|up_3|NZ_CP047340.1_2364893_2365715_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|355aa|up_2|NZ_CP047340.1_2365797_2366862_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|231aa|up_1|NZ_CP047340.1_2366855_2367548_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|257aa|up_0|NZ_CP047340.1_2367565_2368336_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|48aa|down_0|NZ_CP047340.1_2368748_2368892_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|264aa|down_1|NZ_CP047340.1_2369051_2369843_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|169aa|down_2|NZ_CP047340.1_2369988_2370495_-	cd13445, CDI_inhibitor_EC869_like, Inhibitor of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins	NA|62aa|down_3|NZ_CP047340.1_2370498_2370684_-	cd13444, CDI_toxin_EC869_like, Zn-dependent DNAse of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins	NA|111aa|down_4|NZ_CP047340.1_2372028_2372361_-	NA	NA|1795aa|down_5|NZ_CP047340.1_2372357_2377742_-	pfam04830, DUF637, Possible hemagglutinin (DUF637)	NA|514aa|down_6|NZ_CP047340.1_2377757_2379299_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|489aa|down_7|NZ_CP047340.1_2379492_2380959_+	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|251aa|down_8|NZ_CP047340.1_2381348_2382101_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|353aa|down_9|NZ_CP047340.1_2382175_2383234_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
GCF_011045795.1_ASM1104579v1	NZ_CP047340	Proteus cibarius strain ZF1 chromosome, complete genome	6	3867507-3867580	6	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	Orphan	CACGGTGAAGAAGGCGGATGCTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,RT,cas3	NA,NA|53aa|down_3|NZ_CP047340.1_3870159_3870318_-	NA|327aa|up_9|NZ_CP047340.1_3852884_3853865_-	PRK10985, PRK10985, putative hydrolase; Provisional	NA|202aa|up_8|NZ_CP047340.1_3853964_3854570_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|287aa|up_7|NZ_CP047340.1_3855282_3856143_+	PRK11557, PRK11557, MurR/RpiR family transcriptional regulator	NA|515aa|up_6|NZ_CP047340.1_3856292_3857837_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|582aa|up_5|NZ_CP047340.1_3857936_3859682_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|563aa|up_4|NZ_CP047340.1_3860222_3861911_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|645aa|up_3|NZ_CP047340.1_3862242_3864177_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|182aa|up_2|NZ_CP047340.1_3864298_3864844_+	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional	NA|618aa|up_1|NZ_CP047340.1_3864849_3866703_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|68aa|up_0|NZ_CP047340.1_3866716_3866920_+	COG3529, COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]	NA|73aa|down_0|NZ_CP047340.1_3867727_3867946_-	PRK02793, PRK02793, phi X174 lysis protein; Provisional	NA|251aa|down_1|NZ_CP047340.1_3868280_3869033_+	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|294aa|down_2|NZ_CP047340.1_3869131_3870013_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|53aa|down_3|NZ_CP047340.1_3870159_3870318_-	NA	NA|235aa|down_4|NZ_CP047340.1_3870665_3871370_+	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]	NA|132aa|down_5|NZ_CP047340.1_3871379_3871775_+	PRK00207, PRK00207, sulfurtransferase complex subunit TusD	NA|123aa|down_6|NZ_CP047340.1_3871774_3872143_+	PRK00211, PRK00211, sulfurtransferase complex subunit TusC	NA|98aa|down_7|NZ_CP047340.1_3872174_3872468_+	PRK13510, PRK13510, sulfurtransferase complex subunit TusB	NA|125aa|down_8|NZ_CP047340.1_3872595_3872970_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|down_9|NZ_CP047340.1_3873068_3873539_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated
