assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	1	2038040-2038170	1	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|30aa|down_6|NZ_CP043398.1_2045588_2045678_+	NA|413aa|up_9|NZ_CP043398.1_2023742_2024981_-	cd17490, MFS_YxlH_like, Bacillus subtilis YxlH and similar transporters of the Major Facilitator Superfamily	NA|357aa|up_8|NZ_CP043398.1_2025332_2026403_+	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|324aa|up_7|NZ_CP043398.1_2026399_2027371_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|437aa|up_6|NZ_CP043398.1_2028648_2029959_+	PRK12447, PRK12447, histidinol dehydrogenase; Reviewed	NA|438aa|up_5|NZ_CP043398.1_2030025_2031339_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|537aa|up_4|NZ_CP043398.1_2031325_2032936_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|800aa|up_3|NZ_CP043398.1_2033233_2035633_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|211aa|up_2|NZ_CP043398.1_2035616_2036249_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|278aa|up_1|NZ_CP043398.1_2036241_2037075_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|292aa|up_0|NZ_CP043398.1_2037074_2037950_+	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI	NA|458aa|down_0|NZ_CP043398.1_2038328_2039702_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|215aa|down_1|NZ_CP043398.1_2039923_2040568_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP043398.1_2040601_2041750_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|399aa|down_3|NZ_CP043398.1_2042026_2043223_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_CP043398.1_2043338_2044271_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP043398.1_2044267_2045293_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP043398.1_2045588_2045678_+	NA	NA|389aa|down_7|NZ_CP043398.1_2045842_2047009_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP043398.1_2047047_2047629_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|268aa|down_9|NZ_CP043398.1_2047751_2048555_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	2	2072949-2073057	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGTCCGGTTGCGCCGCTTTACGGGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|108aa|up_9|NZ_CP043398.1_2063171_2063495_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP043398.1_2063552_2064209_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP043398.1_2064335_2065610_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP043398.1_2065673_2066534_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP043398.1_2066618_2067224_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|503aa|up_4|NZ_CP043398.1_2067332_2068841_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP043398.1_2069455_2070091_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|229aa|up_2|NZ_CP043398.1_2070087_2070774_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP043398.1_2070776_2071397_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|351aa|up_0|NZ_CP043398.1_2071407_2072460_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP043398.1_2074846_2075425_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP043398.1_2075424_2076006_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP043398.1_2076082_2076523_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP043398.1_2076609_2076825_-	PRK10391, PRK10391, transcription modulator YdgT	NA|57aa|down_4|NZ_CP043398.1_2077028_2077199_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP043398.1_2077432_2078473_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP043398.1_2078505_2079507_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP043398.1_2079603_2080776_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP043398.1_2080823_2082416_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP043398.1_2082594_2083623_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	3	3361109-3361227	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTTCGTTCAGTGCGGGCTGGTGCCCTCACCC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP043398.1_3351030_3352392_-	PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional	NA|322aa|up_8|NZ_CP043398.1_3352388_3353354_-	PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional	NA|286aa|up_7|NZ_CP043398.1_3353353_3354211_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|259aa|up_6|NZ_CP043398.1_3354207_3354984_-	PRK11126, PRK11126, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional	NA|557aa|up_5|NZ_CP043398.1_3354980_3356651_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|432aa|up_4|NZ_CP043398.1_3356739_3358035_-	PRK15012, PRK15012, menaquinone-specific isochorismate synthase; Provisional	NA|102aa|up_3|NZ_CP043398.1_3358131_3358437_-	PRK10404, PRK10404, stress response protein ElaB	NA|154aa|up_2|NZ_CP043398.1_3358499_3358961_-	PRK10314, PRK10314, GNAT family N-acetyltransferase	NA|306aa|up_1|NZ_CP043398.1_3359034_3359952_+	TIGR02649, Ribonuclease_BN, ribonuclease BN	NA|335aa|up_0|NZ_CP043398.1_3360018_3361023_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|486aa|down_0|NZ_CP043398.1_3361300_3362758_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|510aa|down_1|NZ_CP043398.1_3362764_3364294_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|614aa|down_2|NZ_CP043398.1_3364369_3366211_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|101aa|down_3|NZ_CP043398.1_3366207_3366510_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|185aa|down_4|NZ_CP043398.1_3366506_3367061_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|181aa|down_5|NZ_CP043398.1_3367072_3367615_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|326aa|down_6|NZ_CP043398.1_3367628_3368606_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|909aa|down_7|NZ_CP043398.1_3368602_3371329_-	PRK08166, PRK08166, NADH-quinone oxidoreductase subunit NuoG	NA|446aa|down_8|NZ_CP043398.1_3371474_3372812_-	PRK11278, PRK11278, NADH-quinone oxidoreductase subunit NuoF	NA|167aa|down_9|NZ_CP043398.1_3372808_3373309_-	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	4	3707762-3707850	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TCTGAAGCAGGTAAAAAAGGTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|131aa|up_9|NZ_CP043398.1_3698427_3698820_-,NA|195aa|up_8|NZ_CP043398.1_3699573_3700158_-,NA|173aa|up_0|NZ_CP043398.1_3706605_3707124_-,NA|171aa|down_8|NZ_CP043398.1_3714870_3715383_-	NA|131aa|up_9|NZ_CP043398.1_3698427_3698820_-	NA	NA|195aa|up_8|NZ_CP043398.1_3699573_3700158_-	NA	NA|263aa|up_7|NZ_CP043398.1_3700179_3700968_-	pfam01636, APH, Phosphotransferase enzyme family	NA|145aa|up_6|NZ_CP043398.1_3702028_3702463_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|162aa|up_5|NZ_CP043398.1_3702472_3702958_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|229aa|up_4|NZ_CP043398.1_3703079_3703766_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|292aa|up_3|NZ_CP043398.1_3703769_3704645_-	PRK09986, PRK09986, LysR family transcriptional regulator	NA|194aa|up_2|NZ_CP043398.1_3704754_3705336_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|208aa|up_1|NZ_CP043398.1_3705544_3706168_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|173aa|up_0|NZ_CP043398.1_3706605_3707124_-	NA	NA|165aa|down_0|NZ_CP043398.1_3707985_3708480_+	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|169aa|down_1|NZ_CP043398.1_3708511_3709018_+	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|291aa|down_2|NZ_CP043398.1_3709033_3709906_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|468aa|down_3|NZ_CP043398.1_3709983_3711387_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|337aa|down_4|NZ_CP043398.1_3711386_3712397_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|329aa|down_5|NZ_CP043398.1_3712891_3713878_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|175aa|down_6|NZ_CP043398.1_3713887_3714412_-	PRK03657, PRK03657, 2-oxo-tetronate isomerase	NA|151aa|down_7|NZ_CP043398.1_3714408_3714861_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|171aa|down_8|NZ_CP043398.1_3714870_3715383_-	NA	NA|131aa|down_9|NZ_CP043398.1_3715525_3715918_+	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	5	3843455-3845741	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	37,37,36	37	TypeI-E	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP043398.1_3833926_3834688_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP043398.1_3834668_3835718_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP043398.1_3835714_3836194_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP043398.1_3836193_3836904_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP043398.1_3836926_3837238_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|202aa|up_4|NZ_CP043398.1_3837784_3838390_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_3|NZ_CP043398.1_3838389_3839817_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_2|NZ_CP043398.1_3839826_3840735_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|453aa|up_1|NZ_CP043398.1_3840744_3842103_-	PRK10637, cysG, siroheme synthase CysG	NA|349aa|up_0|NZ_CP043398.1_3842342_3843389_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP043398.1_3845846_3846131_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP043398.1_3846130_3847051_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP043398.1_3847047_3847698_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP043398.1_3847679_3848426_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP043398.1_3848435_3849494_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|188aa|down_5|NZ_CP043398.1_3849504_3850068_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP043398.1_3850064_3851621_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_7|NZ_CP043398.1_3852113_3854774_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|245aa|down_8|NZ_CP043398.1_3855082_3855817_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP043398.1_3855832_3857545_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_011045735.1_ASM1104573v1	NZ_CP043398	Leclercia adecarboxylata strain G426 chromosome, complete genome	6	4714767-4714864	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CAGCCGGTACAGCAGCCTAAAGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|132aa|down_4|NZ_CP043398.1_4718800_4719196_-	NA|368aa|up_9|NZ_CP043398.1_4700139_4701243_+	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|724aa|up_8|NZ_CP043398.1_4701346_4703518_-	PRK15061, PRK15061, catalase/peroxidase	NA|297aa|up_7|NZ_CP043398.1_4703661_4704552_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|811aa|up_6|NZ_CP043398.1_4705149_4707582_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|up_5|NZ_CP043398.1_4707584_4708745_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|up_4|NZ_CP043398.1_4709023_4709341_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|227aa|up_3|NZ_CP043398.1_4709385_4710066_-	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|71aa|up_2|NZ_CP043398.1_4710386_4710599_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|732aa|up_1|NZ_CP043398.1_4710801_4712997_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|342aa|up_0|NZ_CP043398.1_4713131_4714157_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional	NA|177aa|down_0|NZ_CP043398.1_4715326_4715857_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|down_1|NZ_CP043398.1_4715866_4717198_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|307aa|down_2|NZ_CP043398.1_4717267_4718188_+	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|162aa|down_3|NZ_CP043398.1_4718279_4718765_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|132aa|down_4|NZ_CP043398.1_4718800_4719196_-	NA	NA|80aa|down_5|NZ_CP043398.1_4719598_4719838_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|282aa|down_6|NZ_CP043398.1_4720241_4721087_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|503aa|down_7|NZ_CP043398.1_4721108_4722617_+	PRK00047, glpK, glycerol kinase GlpK	NA|337aa|down_8|NZ_CP043398.1_4722781_4723792_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|down_9|NZ_CP043398.1_4723888_4724635_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional
