assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	1	467895-468048	1	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP034253.1_477625_478075_-	NA|352aa|up_9|NZ_CP034253.1_457720_458776_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP034253.1_458814_459216_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP034253.1_459273_460518_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP034253.1_460609_461068_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP034253.1_461328_462786_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP034253.1_463142_463409_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP034253.1_463715_464168_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP034253.1_464164_465220_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP034253.1_465290_466076_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP034253.1_466020_467760_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP034253.1_468077_468575_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP034253.1_468750_469509_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP034253.1_469800_470541_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP034253.1_470511_471279_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP034253.1_471484_472063_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP034253.1_472302_474747_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP034253.1_474789_475263_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP034253.1_475416_476187_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP034253.1_477625_478075_-	NA	NA|451aa|down_9|NZ_CP034253.1_482987_484340_+	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	2	658060-658175	2	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|NZ_CP034253.1_646075_647254_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP034253.1_647355_647487_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP034253.1_647575_649231_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP034253.1_649394_650378_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP034253.1_650353_651964_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP034253.1_651947_652646_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP034253.1_652759_653524_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP034253.1_653609_654488_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP034253.1_654826_656527_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP034253.1_656537_658040_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP034253.1_658239_658935_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP034253.1_659009_661361_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP034253.1_661525_664432_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP034253.1_664443_665103_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP034253.1_665219_666035_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP034253.1_666289_668644_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP034253.1_668696_669983_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP034253.1_669982_670972_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP034253.1_670968_671790_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP034253.1_671792_672170_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	3	2127018-2127157	3	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP034253.1_2119483_2120491_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP034253.1_2120696_2121575_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP034253.1_2121583_2122579_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP034253.1_2122787_2123312_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP034253.1_2123305_2123809_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP034253.1_2123795_2124098_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP034253.1_2124148_2124592_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP034253.1_2124571_2125090_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP034253.1_2125217_2125853_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP034253.1_2125925_2126966_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP034253.1_2127170_2127746_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP034253.1_2127755_2128346_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP034253.1_2128365_2128761_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP034253.1_2128718_2130755_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP034253.1_2130818_2131679_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP034253.1_2131721_2132813_-	pfam00419, Fimbrial, Fimbrial protein	NA|232aa|down_6|NZ_CP034253.1_2136146_2136842_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|195aa|down_7|NZ_CP034253.1_2136921_2137506_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_8|NZ_CP034253.1_2137906_2138662_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_9|NZ_CP034253.1_2138662_2139454_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	4	2171915-2172032	4	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|180aa|up_9|NZ_CP034253.1_2158842_2159382_-,NA|55aa|down_0|NZ_CP034253.1_2172105_2172270_-	NA|180aa|up_9|NZ_CP034253.1_2158842_2159382_-	NA	NA|115aa|up_8|NZ_CP034253.1_2159637_2159982_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_7|NZ_CP034253.1_2160170_2161109_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_6|NZ_CP034253.1_2161207_2162197_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_5|NZ_CP034253.1_2162218_2163550_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_4|NZ_CP034253.1_2163575_2164784_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_3|NZ_CP034253.1_2164817_2167112_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|up_2|NZ_CP034253.1_2167585_2168950_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP034253.1_2169224_2170556_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP034253.1_2170583_2171894_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP034253.1_2172105_2172270_-	NA	NA|234aa|down_1|NZ_CP034253.1_2172292_2172994_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP034253.1_2173098_2173995_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP034253.1_2174045_2174402_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP034253.1_2174643_2175009_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP034253.1_2175301_2176288_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP034253.1_2176357_2176840_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP034253.1_2176935_2177235_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP034253.1_2177224_2177629_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP034253.1_2177631_2177937_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	5	2545345-2545861	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP034253.1_2544054_2544195_-,NA	NA|919aa|up_9|NZ_CP034253.1_2531939_2534696_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP034253.1_2534752_2536054_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP034253.1_2536101_2538336_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP034253.1_2538413_2538662_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP034253.1_2538661_2538997_+	PRK09907, PRK09907, endoribonuclease MazF	NA|546aa|up_4|NZ_CP034253.1_2540085_2541723_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP034253.1_2541810_2543109_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP034253.1_2543168_2544041_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP034253.1_2544054_2544195_-	NA	NA|224aa|up_0|NZ_CP034253.1_2544333_2545005_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP034253.1_2546498_2547977_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_CP034253.1_2549598_2550384_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|470aa|down_2|NZ_CP034253.1_2551928_2553338_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_3|NZ_CP034253.1_2553315_2554095_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_4|NZ_CP034253.1_2554058_2554952_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP034253.1_2555099_2555675_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP034253.1_2555691_2555952_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_7|NZ_CP034253.1_2555942_2557214_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_8|NZ_CP034253.1_2557291_2557657_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_9|NZ_CP034253.1_2557972_2559772_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	6	2568245-2568883	2,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas6e,cas1,cas2	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP034253.1_2555942_2557214_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP034253.1_2557291_2557657_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP034253.1_2557972_2559772_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP034253.1_2559771_2561484_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP034253.1_2561557_2562292_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP034253.1_2562556_2562709_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP034253.1_2565559_2566306_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP034253.1_2566287_2566938_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP034253.1_2566934_2567858_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP034253.1_2567854_2568148_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP034253.1_2568964_2570002_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP034253.1_2570253_2571162_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP034253.1_2571163_2572591_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP034253.1_2572590_2573196_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP034253.1_2573245_2573569_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP034253.1_2573761_2574073_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|160aa|down_6|NZ_CP034253.1_2574800_2575280_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP034253.1_2575276_2576326_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP034253.1_2576306_2577068_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP034253.1_2577061_2577688_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	7	3084233-3084350	7	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP034253.1_3079313_3079628_-,NA	NA|300aa|up_9|NZ_CP034253.1_3071226_3072126_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP034253.1_3072318_3073509_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP034253.1_3073505_3074765_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP034253.1_3074754_3076383_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP034253.1_3076655_3078014_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP034253.1_3078018_3079095_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP034253.1_3079313_3079628_-	NA	NA|217aa|up_2|NZ_CP034253.1_3082047_3082698_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP034253.1_3082751_3083006_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP034253.1_3083005_3084136_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP034253.1_3084369_3086655_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP034253.1_3087350_3091103_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP034253.1_3091230_3091953_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP034253.1_3092099_3094727_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP034253.1_3094875_3096564_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP034253.1_3096560_3097184_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP034253.1_3097327_3101722_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP034253.1_3101722_3103372_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP034253.1_3103376_3104153_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP034253.1_3104226_3105411_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	8	3673952-3674075	8	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|30aa|down_5|NZ_CP034253.1_3682967_3683057_+	NA|79aa|up_9|NZ_CP034253.1_3662861_3663098_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP034253.1_3663407_3664820_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP034253.1_3665375_3665585_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP034253.1_3666040_3666667_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP034253.1_3666687_3668790_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|NZ_CP034253.1_3668802_3669441_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP034253.1_3669504_3670173_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP034253.1_3670169_3670955_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP034253.1_3670958_3671771_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP034253.1_3673511_3673817_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP034253.1_3674389_3675646_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP034253.1_3675685_3677059_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP034253.1_3677273_3677915_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|311aa|down_3|NZ_CP034253.1_3680714_3681647_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_4|NZ_CP034253.1_3681643_3682669_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_5|NZ_CP034253.1_3682967_3683057_+	NA	NA|390aa|down_6|NZ_CP034253.1_3683221_3684391_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_7|NZ_CP034253.1_3684536_3685118_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_8|NZ_CP034253.1_3685245_3686061_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|116aa|down_9|NZ_CP034253.1_3686392_3686740_+	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	9	4328216-4328307	9	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|101aa|up_9|NZ_CP034253.1_4315295_4315598_+,NA	NA|101aa|up_9|NZ_CP034253.1_4315295_4315598_+	NA	NA|503aa|up_8|NZ_CP034253.1_4315802_4317311_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|213aa|up_7|NZ_CP034253.1_4321732_4322371_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP034253.1_4322658_4323750_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP034253.1_4323749_4324442_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP034253.1_4324453_4324840_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP034253.1_4324847_4325648_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP034253.1_4325657_4326248_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP034253.1_4326258_4326753_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP034253.1_4326773_4328102_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP034253.1_4328730_4329327_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP034253.1_4329347_4329575_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP034253.1_4329612_4330854_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP034253.1_4331145_4332405_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP034253.1_4332664_4333585_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP034253.1_4333584_4333890_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP034253.1_4333982_4334582_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP034253.1_4334578_4337125_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP034253.1_4337124_4338297_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP034253.1_4338426_4339119_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_011045455.1_ASM1104545v1	NZ_CP034253	Escherichia coli strain IVRI Kol CP4 chromosome, complete genome	10	4643573-4643717	10	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|94aa|up_7|NZ_CP034253.1_4638960_4639242_+,NA|201aa|up_5|NZ_CP034253.1_4639772_4640375_-,NA|56aa|up_4|NZ_CP034253.1_4640617_4640785_+,NA	NA|61aa|up_9|NZ_CP034253.1_4638603_4638786_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_CP034253.1_4638758_4638950_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_CP034253.1_4638960_4639242_+	NA	NA|74aa|up_6|NZ_CP034253.1_4639340_4639562_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_5|NZ_CP034253.1_4639772_4640375_-	NA	NA|56aa|up_4|NZ_CP034253.1_4640617_4640785_+	NA	NA|73aa|up_3|NZ_CP034253.1_4640824_4641043_+	pfam07825, Exc, Excisionase-like protein	NA|98aa|up_2|NZ_CP034253.1_4641020_4641314_+	pfam09003, Arm-DNA-bind_1, Bacteriophage lambda integrase, Arm DNA-binding domain	NA|231aa|up_1|NZ_CP034253.1_4641397_4642090_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP034253.1_4642223_4643507_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|478aa|down_0|NZ_CP034253.1_4646182_4647616_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_1|NZ_CP034253.1_4647691_4648744_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_CP034253.1_4648927_4649881_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP034253.1_4649921_4650917_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP034253.1_4651071_4651890_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP034253.1_4651890_4652949_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP034253.1_4652951_4653641_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP034253.1_4653640_4654414_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP034253.1_4654580_4654730_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP034253.1_4654858_4655647_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
