assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045275.1_ASM1104527v1	NZ_CP049197	Escherichia coli strain E597 chromosome, complete genome	1	322182-322820	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCGA,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	4,10,10	10	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA	NA|919aa|up_9|NZ_CP049197.1_308775_311532_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP049197.1_311588_312890_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP049197.1_312937_315172_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP049197.1_315249_315498_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP049197.1_315497_315833_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP049197.1_315904_316696_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP049197.1_316923_318561_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP049197.1_318647_319946_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP049197.1_320005_320878_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP049197.1_321171_321843_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP049197.1_323457_324936_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP049197.1_324962_326240_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP049197.1_326558_327344_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP049197.1_327413_328868_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP049197.1_328889_330299_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP049197.1_330276_331056_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP049197.1_331019_331913_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP049197.1_332012_333361_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP049197.1_333495_334071_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP049197.1_334087_334348_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_011045275.1_ASM1104527v1	NZ_CP049197	Escherichia coli strain E597 chromosome, complete genome	2	349958-350532	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA	NA|245aa|up_9|NZ_CP049197.1_339953_340688_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP049197.1_340952_341105_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP049197.1_341299_343999_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP049197.1_344096_345659_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP049197.1_345655_346192_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP049197.1_346206_347262_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP049197.1_347272_348019_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP049197.1_348000_348651_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP049197.1_348647_349571_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP049197.1_349567_349861_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP049197.1_350616_351654_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP049197.1_351905_352814_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP049197.1_352815_354243_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP049197.1_354242_354848_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP049197.1_354897_355221_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP049197.1_355414_355726_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP049197.1_355744_356455_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP049197.1_356454_356934_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP049197.1_356930_357980_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP049197.1_357960_358722_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011045275.1_ASM1104527v1	NZ_CP049197	Escherichia coli strain E597 chromosome, complete genome	3	1535305-1535428	3	CRISPRCasFinder	no	DEDDh	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA|30aa|down_7|NZ_CP049197.1_1544325_1544415_+	NA|471aa|up_9|NZ_CP049197.1_1524757_1526170_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP049197.1_1526726_1526936_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP049197.1_1527391_1528018_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP049197.1_1528038_1530141_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP049197.1_1530153_1530792_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP049197.1_1530855_1531524_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP049197.1_1531520_1532306_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP049197.1_1532309_1533122_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP049197.1_1533133_1534738_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP049197.1_1534863_1535169_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP049197.1_1535743_1537000_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP049197.1_1537040_1538414_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP049197.1_1538628_1539270_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP049197.1_1539309_1540458_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP049197.1_1540748_1541960_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP049197.1_1542072_1543005_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP049197.1_1543001_1544027_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP049197.1_1544325_1544415_+	NA	NA|390aa|down_8|NZ_CP049197.1_1544580_1545750_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP049197.1_1545895_1546477_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011045275.1_ASM1104527v1	NZ_CP049197	Escherichia coli strain E597 chromosome, complete genome	4	2377629-2377720	4	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA|70aa|up_9|NZ_CP049197.1_2366880_2367090_-,NA	NA|70aa|up_9|NZ_CP049197.1_2366880_2367090_-	NA	NA|1321aa|up_8|NZ_CP049197.1_2367144_2371107_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP049197.1_2371146_2371785_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP049197.1_2372072_2373164_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP049197.1_2373163_2373856_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP049197.1_2373867_2374254_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP049197.1_2374261_2375074_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP049197.1_2375070_2375661_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP049197.1_2375671_2376166_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP049197.1_2376186_2377515_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP049197.1_2378143_2378740_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP049197.1_2378760_2378988_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP049197.1_2379025_2380267_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP049197.1_2380559_2381816_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP049197.1_2382075_2382996_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP049197.1_2382995_2383301_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|450aa|down_6|NZ_CP049197.1_2383398_2384747_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|200aa|down_7|NZ_CP049197.1_2384829_2385429_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP049197.1_2385425_2387972_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP049197.1_2387971_2389144_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
GCF_011045275.1_ASM1104527v1	NZ_CP049197	Escherichia coli strain E597 chromosome, complete genome	5	3678591-3678740	5	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA|532aa|down_7|NZ_CP049197.1_3686548_3688144_-	NA|340aa|up_9|NZ_CP049197.1_3666783_3667803_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP049197.1_3667806_3668370_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP049197.1_3668586_3669618_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP049197.1_3669641_3670406_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP049197.1_3670468_3671788_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP049197.1_3671854_3672853_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP049197.1_3672930_3674433_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP049197.1_3674593_3675676_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP049197.1_3675675_3676776_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP049197.1_3677042_3678554_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP049197.1_3678907_3679351_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP049197.1_3679350_3682206_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP049197.1_3682261_3683458_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP049197.1_3683650_3684154_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|153aa|down_4|NZ_CP049197.1_3684262_3684721_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|139aa|down_5|NZ_CP049197.1_3684910_3685327_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP049197.1_3685488_3686493_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_7|NZ_CP049197.1_3686548_3688144_-	NA	NA|151aa|down_8|NZ_CP049197.1_3688266_3688719_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_9|NZ_CP049197.1_3688863_3689457_-	COG1309, AcrR, Transcriptional regulator [Transcription]
