assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045255.1_ASM1104525v1	NZ_CP049196	Escherichia coli strain E118 chromosome, complete genome	1	527324-527962	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,10,10	10	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA	NA|919aa|up_9|NZ_CP049196.1_513917_516674_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP049196.1_516730_518032_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP049196.1_518079_520314_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP049196.1_520391_520640_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP049196.1_520639_520975_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP049196.1_521046_521838_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP049196.1_522065_523703_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP049196.1_523789_525088_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP049196.1_525147_526020_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP049196.1_526313_526985_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP049196.1_528599_530078_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP049196.1_530104_531382_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP049196.1_531700_532486_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP049196.1_532555_534010_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP049196.1_534031_535441_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP049196.1_535418_536198_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP049196.1_536161_537055_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP049196.1_537154_538503_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP049196.1_538637_539213_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP049196.1_539229_539490_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_011045255.1_ASM1104525v1	NZ_CP049196	Escherichia coli strain E118 chromosome, complete genome	2	555100-555674	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA	NA|245aa|up_9|NZ_CP049196.1_545095_545830_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP049196.1_546094_546247_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP049196.1_546441_549141_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP049196.1_549238_550801_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP049196.1_550797_551334_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP049196.1_551348_552404_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP049196.1_552414_553161_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP049196.1_553142_553793_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP049196.1_553789_554713_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP049196.1_554709_555003_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP049196.1_555758_556796_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP049196.1_557047_557956_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP049196.1_557957_559385_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP049196.1_559384_559990_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP049196.1_560039_560363_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP049196.1_560556_560868_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP049196.1_560886_561597_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP049196.1_561596_562076_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP049196.1_562072_563122_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP049196.1_563102_563864_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011045255.1_ASM1104525v1	NZ_CP049196	Escherichia coli strain E118 chromosome, complete genome	3	1738999-1739122	3	CRISPRCasFinder	no	DEDDh	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA|30aa|down_7|NZ_CP049196.1_1748019_1748109_+	NA|471aa|up_9|NZ_CP049196.1_1728451_1729864_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP049196.1_1730420_1730630_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP049196.1_1731085_1731712_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP049196.1_1731732_1733835_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP049196.1_1733847_1734486_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP049196.1_1734549_1735218_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP049196.1_1735214_1736000_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP049196.1_1736003_1736816_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP049196.1_1736827_1738432_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP049196.1_1738557_1738863_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP049196.1_1739437_1740694_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP049196.1_1740734_1742108_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP049196.1_1742322_1742964_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP049196.1_1743003_1744152_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP049196.1_1744442_1745654_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP049196.1_1745766_1746699_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP049196.1_1746695_1747721_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP049196.1_1748019_1748109_+	NA	NA|390aa|down_8|NZ_CP049196.1_1748274_1749444_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP049196.1_1749589_1750171_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011045255.1_ASM1104525v1	NZ_CP049196	Escherichia coli strain E118 chromosome, complete genome	4	2678095-2678186	4	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA|70aa|up_9|NZ_CP049196.1_2667346_2667556_-,NA	NA|70aa|up_9|NZ_CP049196.1_2667346_2667556_-	NA	NA|1321aa|up_8|NZ_CP049196.1_2667610_2671573_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP049196.1_2671612_2672251_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP049196.1_2672538_2673630_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP049196.1_2673629_2674322_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP049196.1_2674333_2674720_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP049196.1_2674727_2675540_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP049196.1_2675536_2676127_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP049196.1_2676137_2676632_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP049196.1_2676652_2677981_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP049196.1_2678609_2679206_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP049196.1_2679226_2679454_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP049196.1_2679491_2680733_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP049196.1_2681025_2682282_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP049196.1_2682541_2683462_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP049196.1_2683461_2683767_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP049196.1_2685294_2685894_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP049196.1_2685890_2688437_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP049196.1_2688436_2689609_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP049196.1_2689738_2690431_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_011045255.1_ASM1104525v1	NZ_CP049196	Escherichia coli strain E118 chromosome, complete genome	5	3983314-3983463	5	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,WYL,PD-DExK	NA,NA|532aa|down_7|NZ_CP049196.1_3991271_3992867_-	NA|340aa|up_9|NZ_CP049196.1_3971506_3972526_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP049196.1_3972529_3973093_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP049196.1_3973309_3974341_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP049196.1_3974364_3975129_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP049196.1_3975191_3976511_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP049196.1_3976577_3977576_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP049196.1_3977653_3979156_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP049196.1_3979316_3980399_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP049196.1_3980398_3981499_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP049196.1_3981765_3983277_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP049196.1_3983630_3984074_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP049196.1_3984073_3986929_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP049196.1_3986984_3988181_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP049196.1_3988373_3988877_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|153aa|down_4|NZ_CP049196.1_3988985_3989444_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|139aa|down_5|NZ_CP049196.1_3989633_3990050_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP049196.1_3990211_3991216_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_7|NZ_CP049196.1_3991271_3992867_-	NA	NA|151aa|down_8|NZ_CP049196.1_3992989_3993442_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|238aa|down_9|NZ_CP049196.1_3994249_3994963_+	PRK12742, PRK12742, SDR family oxidoreductase
