assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	1	1140305-1140577	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	cas3	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACC	29,29,26	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|83aa|up_9|NZ_CP049201.1_1130794_1131043_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP049201.1_1131042_1131378_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP049201.1_1131448_1132240_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP049201.1_1132467_1134105_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP049201.1_1134192_1135491_+	PRK00077, eno, enolase; Provisional	NA|301aa|up_4|NZ_CP049201.1_1135550_1136453_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP049201.1_1136449_1137598_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|NZ_CP049201.1_1137612_1138506_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP049201.1_1138519_1139122_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP049201.1_1139294_1139966_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP049201.1_1141214_1142693_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP049201.1_1142719_1143997_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP049201.1_1144316_1145102_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP049201.1_1145171_1146626_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP049201.1_1146647_1148057_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP049201.1_1148034_1148814_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP049201.1_1148777_1149671_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP049201.1_1149817_1150393_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP049201.1_1150409_1150670_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP049201.1_1150660_1151932_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	2	1166267-1166478	2,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	2,3	3	TypeI-E	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP049201.1_1156275_1157010_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP049201.1_1157274_1157427_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP049201.1_1157619_1160319_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP049201.1_1160408_1161971_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP049201.1_1161967_1162504_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP049201.1_1162515_1163571_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP049201.1_1163581_1164328_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP049201.1_1164309_1164960_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP049201.1_1164956_1165880_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP049201.1_1165876_1166170_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP049201.1_1166498_1167536_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP049201.1_1167787_1168696_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP049201.1_1168697_1170125_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP049201.1_1170124_1170730_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP049201.1_1170779_1171103_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP049201.1_1171296_1171608_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP049201.1_1171626_1172337_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP049201.1_1172336_1172816_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP049201.1_1172812_1173862_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP049201.1_1173842_1174604_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	3	1233108-1233250	3	CRISPRCasFinder	no	csa3	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-A	TTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTG	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|34aa|up_3|NZ_CP049201.1_1230518_1230620_+,NA	NA|143aa|up_9|NZ_CP049201.1_1224377_1224806_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|519aa|up_8|NZ_CP049201.1_1224878_1226435_+	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|172aa|up_7|NZ_CP049201.1_1226584_1227100_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|513aa|up_6|NZ_CP049201.1_1227163_1228702_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|391aa|up_5|NZ_CP049201.1_1228718_1229891_-	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|177aa|up_4|NZ_CP049201.1_1230017_1230548_-	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|34aa|up_3|NZ_CP049201.1_1230518_1230620_+	NA	NA|112aa|up_2|NZ_CP049201.1_1230638_1230974_-	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|246aa|up_1|NZ_CP049201.1_1230963_1231701_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|395aa|up_0|NZ_CP049201.1_1231824_1233009_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|331aa|down_0|NZ_CP049201.1_1233300_1234293_-	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|355aa|down_1|NZ_CP049201.1_1234349_1235414_-	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|401aa|down_2|NZ_CP049201.1_1235406_1236609_-	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|320aa|down_3|NZ_CP049201.1_1236963_1237923_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|715aa|down_4|NZ_CP049201.1_1237932_1240077_-	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|137aa|down_5|NZ_CP049201.1_1240049_1240460_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|82aa|down_6|NZ_CP049201.1_1240456_1240702_-	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|110aa|down_7|NZ_CP049201.1_1240949_1241279_-	PRK10132, PRK10132, hypothetical protein; Provisional	NA|115aa|down_8|NZ_CP049201.1_1241430_1241775_+	PRK10556, PRK10556, hypothetical protein; Provisional	NA|150aa|down_9|NZ_CP049201.1_1241811_1242261_-	pfam06610, AlaE, L-alanine exporter
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	4	1735822-1735927	4	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|357aa|up_5|NZ_CP049201.1_1729801_1730872_-,NA	NA|420aa|up_9|NZ_CP049201.1_1723989_1725249_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP049201.1_1725238_1726867_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP049201.1_1727139_1728498_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP049201.1_1728502_1729579_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_5|NZ_CP049201.1_1729801_1730872_-	NA	NA|293aa|up_4|NZ_CP049201.1_1731335_1732214_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|397aa|up_3|NZ_CP049201.1_1732365_1733556_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP049201.1_1733636_1734287_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP049201.1_1734340_1734595_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP049201.1_1734594_1735725_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP049201.1_1735951_1738237_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP049201.1_1738932_1742685_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP049201.1_1742825_1743548_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP049201.1_1743694_1746322_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP049201.1_1746470_1748159_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP049201.1_1748155_1748779_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1451aa|down_6|NZ_CP049201.1_1748964_1753317_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP049201.1_1753317_1754967_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP049201.1_1754971_1755748_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_9|NZ_CP049201.1_1756022_1758872_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	5	2364024-2364147	5	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP049201.1_2373043_2373133_+	NA|471aa|up_9|NZ_CP049201.1_2353478_2354891_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP049201.1_2355447_2355657_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP049201.1_2356111_2356738_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP049201.1_2356758_2358861_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP049201.1_2358873_2359512_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP049201.1_2359575_2360244_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP049201.1_2360240_2361026_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP049201.1_2361029_2361842_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP049201.1_2361853_2363458_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP049201.1_2363583_2363889_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP049201.1_2364461_2365718_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP049201.1_2365758_2367132_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP049201.1_2367346_2367988_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP049201.1_2368027_2369176_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP049201.1_2369466_2370678_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP049201.1_2370790_2371723_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP049201.1_2371719_2372745_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP049201.1_2373043_2373133_+	NA	NA|390aa|down_8|NZ_CP049201.1_2373298_2374468_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP049201.1_2374613_2375195_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	6	3228054-3228145	6	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP049201.1_3217304_3217514_-,NA	NA|70aa|up_9|NZ_CP049201.1_3217304_3217514_-	NA	NA|1321aa|up_8|NZ_CP049201.1_3217568_3221531_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP049201.1_3221570_3222209_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP049201.1_3222496_3223588_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP049201.1_3223587_3224280_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP049201.1_3224291_3224678_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP049201.1_3224685_3225486_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP049201.1_3225495_3226086_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP049201.1_3226096_3226591_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP049201.1_3226611_3227940_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP049201.1_3228568_3229165_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP049201.1_3229185_3229413_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP049201.1_3229450_3230692_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP049201.1_3230983_3232240_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP049201.1_3232499_3233420_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP049201.1_3233419_3233725_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP049201.1_3233876_3234476_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP049201.1_3234472_3237019_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP049201.1_3237018_3238191_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP049201.1_3238320_3239013_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	7	4198029-4198178	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|551aa|up_6|NZ_CP049201.1_4189258_4190911_+,NA|359aa|down_7|NZ_CP049201.1_4207869_4208946_+,NA|270aa|down_8|NZ_CP049201.1_4209083_4209893_+	NA|238aa|up_9|NZ_CP049201.1_4187161_4187875_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP049201.1_4187945_4188539_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP049201.1_4188683_4189136_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|551aa|up_6|NZ_CP049201.1_4189258_4190911_+	NA	NA|335aa|up_5|NZ_CP049201.1_4190983_4191988_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP049201.1_4192149_4192566_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP049201.1_4192611_4193115_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP049201.1_4193307_4194504_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP049201.1_4194559_4197415_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP049201.1_4197414_4197858_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP049201.1_4198214_4199726_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP049201.1_4199992_4201093_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP049201.1_4201092_4202175_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP049201.1_4202335_4203838_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP049201.1_4203967_4204987_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|417aa|down_5|NZ_CP049201.1_4205456_4206707_+	PRK09692, PRK09692, integrase; Provisional	NA|380aa|down_6|NZ_CP049201.1_4206794_4207934_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|359aa|down_7|NZ_CP049201.1_4207869_4208946_+	NA	NA|270aa|down_8|NZ_CP049201.1_4209083_4209893_+	NA	NA|69aa|down_9|NZ_CP049201.1_4210058_4210265_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]
GCF_011045215.1_ASM1104521v1	NZ_CP049201	Escherichia coli strain PapRG-04-4 chromosome, complete genome	8	5368836-5368984	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AGTTCACTGCCGTACAGGCAGCTTAGAAA	29	0	0	NA	NA	I-F	2	2	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|606aa|down_1|NZ_CP049201.1_5370770_5372588_-,NA|258aa|down_7|NZ_CP049201.1_5378941_5379715_-,NA|132aa|down_8|NZ_CP049201.1_5380022_5380418_-,NA|208aa|down_9|NZ_CP049201.1_5380677_5381301_+	NA|551aa|up_9|NZ_CP049201.1_5355244_5356897_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP049201.1_5357040_5357940_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP049201.1_5358434_5359130_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP049201.1_5359555_5361214_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_5|NZ_CP049201.1_5361210_5362161_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP049201.1_5362317_5363433_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP049201.1_5363429_5365376_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP049201.1_5365448_5365673_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP049201.1_5365995_5366316_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP049201.1_5366346_5368623_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|401aa|down_0|NZ_CP049201.1_5369380_5370583_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|606aa|down_1|NZ_CP049201.1_5370770_5372588_-	NA	NA|99aa|down_2|NZ_CP049201.1_5373700_5373997_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|66aa|down_3|NZ_CP049201.1_5374223_5374421_+	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|478aa|down_4|NZ_CP049201.1_5374639_5376073_+	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|188aa|down_5|NZ_CP049201.1_5377011_5377575_+	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|188aa|down_6|NZ_CP049201.1_5378087_5378651_+	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|258aa|down_7|NZ_CP049201.1_5378941_5379715_-	NA	NA|132aa|down_8|NZ_CP049201.1_5380022_5380418_-	NA	NA|208aa|down_9|NZ_CP049201.1_5380677_5381301_+	NA
GCF_011045215.1_ASM1104521v1	NZ_CP049202	Escherichia coli strain PapRG-04-4 plasmid pIncFIB, complete sequence	1	28621-28702	1	CRISPRCasFinder	no			Orphan	CTCACCAATAAATAAGCGTCAATACGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|48aa|up_9|NZ_CP049202.1_19992_20136_-,NA|191aa|up_8|NZ_CP049202.1_20355_20928_+,NA|188aa|up_5|NZ_CP049202.1_22520_23084_+,NA|52aa|up_4|NZ_CP049202.1_23262_23418_-,NA|293aa|down_3|NZ_CP049202.1_32474_33353_-,NA|84aa|down_5|NZ_CP049202.1_34625_34877_-,NA|316aa|down_6|NZ_CP049202.1_35074_36022_-	NA|48aa|up_9|NZ_CP049202.1_19992_20136_-	NA	NA|191aa|up_8|NZ_CP049202.1_20355_20928_+	NA	NA|94aa|up_7|NZ_CP049202.1_21403_21685_+	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|108aa|up_6|NZ_CP049202.1_21684_22008_+	pfam01845, CcdB, CcdB protein	NA|188aa|up_5|NZ_CP049202.1_22520_23084_+	NA	NA|52aa|up_4|NZ_CP049202.1_23262_23418_-	NA	NA|140aa|up_3|NZ_CP049202.1_23602_24022_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|up_2|NZ_CP049202.1_24018_24369_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|512aa|up_1|NZ_CP049202.1_26192_27728_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_0|NZ_CP049202.1_27744_28500_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|213aa|down_0|NZ_CP049202.1_29108_29747_-	cd16397, IbrB_like, immunoglobulin-binding regulator IbrB activates eib genes	NA|410aa|down_1|NZ_CP049202.1_29731_30961_-	COG3969, COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]	NA|280aa|down_2|NZ_CP049202.1_31614_32454_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|293aa|down_3|NZ_CP049202.1_32474_33353_-	NA	NA|382aa|down_4|NZ_CP049202.1_33387_34533_-	pfam13265, DUF4056, Protein of unknown function (DUF4056)	NA|84aa|down_5|NZ_CP049202.1_34625_34877_-	NA	NA|316aa|down_6|NZ_CP049202.1_35074_36022_-	NA	NA|314aa|down_7|NZ_CP049202.1_36033_36975_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|366aa|down_8|NZ_CP049202.1_37056_38154_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|277aa|down_9|NZ_CP049202.1_38163_38994_-	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins
