The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP049056	Halovulum dunhuangense strain RR4-56 chromosome, complete genome	4373045	611428	664856	4373045	capsid,head,protease,tRNA,tail	Paracoccus_phage(23.53%)	55	NA	NA
WP_165103183.1|611428_612433_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_165094736.1|612586_613732_+	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_165094739.1|613728_614187_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_165094742.1|614186_614672_+	CinA family protein	NA	NA	NA	NA	NA
WP_165094744.1|614686_615142_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_165094747.1|615222_615756_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_165103186.1|615775_617989_-	GAF domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	35.6	7.7e-35
WP_165094749.1|618047_618590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165094752.1|618677_619034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165094755.1|619034_619991_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_165094758.1|620347_621301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165094761.1|621512_622253_+	GMP synthase	NA	NA	NA	NA	NA
WP_165103189.1|622449_622818_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_165094763.1|622869_623937_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_165094766.1|623933_624356_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	53.3	1.3e-31
WP_165094769.1|624348_625065_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	66.5	6.4e-84
WP_165094772.1|625117_626512_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_165103192.1|626585_627143_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	30.1	1.4e-14
WP_165094774.1|627375_628671_-	MFS transporter	NA	NA	NA	NA	NA
WP_165094777.1|628713_629778_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_165094779.1|629908_630472_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	55.6	2.1e-45
WP_165094782.1|630527_631022_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	45.7	3.2e-34
WP_165094785.1|631091_633656_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_165094787.1|633952_634387_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_165094790.1|634609_637474_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	61.1	0.0e+00
WP_165094793.1|637702_638173_+	single-stranded DNA-binding protein	NA	A0A0U2C0X4	Paracoccus_phage	81.9	5.2e-50
WP_165094795.1|638271_639018_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_165094798.1|639121_640123_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_165094801.1|641287_641674_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_165094804.1|641759_642389_+	sulfotransferase family protein	NA	NA	NA	NA	NA
WP_165103196.1|642401_644120_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_165094806.1|644348_645626_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	59.8	1.1e-137
WP_165103199.1|645684_646848_+	TCR/Tet family MFS transporter	NA	NA	NA	NA	NA
WP_165094808.1|646863_647457_-	VPLPA-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_165103202.1|647654_647936_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_165094811.1|648119_649109_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_165094814.1|649121_650501_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA	NA
WP_165094816.1|650513_651845_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
WP_165094818.1|651861_652710_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_165094820.1|652804_653134_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_165103205.1|653165_653354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165094822.1|653434_654151_-	DUF2793 domain-containing protein	NA	A0A0K1Y6G9	Rhodobacter_phage	46.3	2.1e-18
WP_165094824.1|654143_658049_-	host specificity protein	NA	A0A0K1LL82	Rhodobacter_phage	38.8	3.2e-233
WP_165094826.1|658052_658478_-	peptidase	NA	F4YXU4	Roseobacter_phage	46.8	2.7e-29
WP_165094828.1|658494_659385_-	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	43.7	4.7e-68
WP_165094830.1|659384_660017_-	DUF2460 domain-containing protein	NA	A0A0B5A2K3	Paracoccus_phage	52.2	3.4e-60
WP_165094833.1|660024_660675_-|tail	phage tail tape measure protein	tail	A0A1W6JP49	Morganella_phage	31.1	1.4e-08
WP_165094835.1|660674_660890_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_165103208.1|660886_661201_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_165094838.1|661200_661614_-|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_165094842.1|661643_662063_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_165094845.1|662059_662395_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_165094848.1|662391_662958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165094851.1|663098_664262_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	40.2	8.1e-60
WP_165094854.1|664304_664856_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	47.9	7.8e-29
>prophage 2
NZ_CP049056	Halovulum dunhuangense strain RR4-56 chromosome, complete genome	4373045	3010402	3046185	4373045	tail,portal,terminase	Acidithiobacillus_phage(29.63%)	39	NA	NA
WP_165103684.1|3010402_3010891_+	hypothetical protein	NA	K4HZ96	Acidithiobacillus_phage	41.6	2.1e-25
WP_165099865.1|3010887_3011760_+	ATP-binding protein	NA	K4HZX9	Acidithiobacillus_phage	62.4	8.6e-99
WP_165099868.1|3011779_3012409_+	hypothetical protein	NA	K4ICM8	Acidithiobacillus_phage	55.3	5.5e-55
WP_165099871.1|3012423_3014088_+	DEAD/DEAH box helicase	NA	A0A2D1GP10	Streptomyces_phage	36.7	3.6e-45
WP_139084982.1|3014309_3014510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165099873.1|3014509_3015277_+	hypothetical protein	NA	K4HZA0	Acidithiobacillus_phage	55.5	1.2e-72
WP_165099875.1|3015228_3017568_+	AAA family ATPase	NA	A0A1B2LRS1	Wolbachia_phage	49.4	8.3e-72
WP_165103687.1|3017957_3018446_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	64.4	7.1e-50
WP_165103690.1|3018451_3018646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165099878.1|3018638_3019061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165099880.1|3019126_3020371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165103692.1|3020965_3022294_+	site-specific DNA-methyltransferase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	38.6	9.2e-76
WP_165099882.1|3022290_3022515_+	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	64.8	1.2e-17
WP_165099884.1|3022568_3023132_-	DUF3489 domain-containing protein	NA	K4HZZ2	Acidithiobacillus_phage	35.7	8.5e-15
WP_165099886.1|3023227_3023446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165099888.1|3023460_3023730_-	hypothetical protein	NA	A0A0K0PVN5	Roseobacter_phage	53.6	1.5e-14
WP_165099890.1|3023841_3024402_+	hypothetical protein	NA	A0A2H4JCL4	uncultured_Caudovirales_phage	43.6	3.3e-27
WP_165103695.1|3024391_3026347_+|terminase	phage terminase large subunit family protein	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	60.7	3.5e-217
WP_165099892.1|3026349_3026559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165099894.1|3026558_3028055_+|portal	phage portal protein	portal	Q75QM9	Wolbachia_phage	38.6	5.7e-82
WP_165099896.1|3028078_3028579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165099898.1|3028725_3030780_+	peptidase U37	NA	A0A2I7S8L6	Vibrio_phage	32.7	4.9e-84
WP_165099900.1|3030857_3031193_+	DUF2190 family protein	NA	A0A088C4T4	Shewanella_sp._phage	43.1	2.7e-08
WP_165099902.1|3031192_3031504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165103698.1|3031509_3032139_+	hypothetical protein	NA	G8DH49	Emiliania_huxleyi_virus	52.4	1.7e-51
WP_093359427.1|3032208_3033063_-	cation transporter	NA	NA	NA	NA	NA
WP_093359426.1|3033116_3033485_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_165099905.1|3033593_3034013_+	acyl-CoA transferase	NA	G8DH50	Emiliania_huxleyi_virus	56.4	5.9e-37
WP_165099908.1|3034037_3034979_+	hypothetical protein	NA	G8DH51	Emiliania_huxleyi_virus	56.4	2.7e-98
WP_165099910.1|3034978_3035416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165093516.1|3035499_3035643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165099912.1|3035635_3038053_+|tail	phage tail tape measure protein	tail	A0A1J0GUY9	Halomonas_phage	37.1	7.4e-23
WP_165099915.1|3038114_3038741_+	DUF2460 domain-containing protein	NA	A0A0B5A2K3	Paracoccus_phage	57.3	1.8e-61
WP_165099917.1|3038737_3039622_+	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	46.4	8.3e-65
WP_165099920.1|3039618_3040065_+	peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	46.7	5.7e-30
WP_165099922.1|3040074_3044043_+	hypothetical protein	NA	A0A0B5A7K5	Paracoccus_phage	43.7	4.7e-269
WP_165099925.1|3044053_3045130_+	DUF2793 domain-containing protein	NA	A0A0B5A0F6	Paracoccus_phage	40.7	5.0e-56
WP_165099929.1|3045150_3045438_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	51.9	7.6e-12
WP_165099934.1|3045510_3046185_+	DUF882 domain-containing protein	NA	A0A0K1LLY2	Rhodobacter_phage	51.7	7.2e-45
>prophage 3
NZ_CP049056	Halovulum dunhuangense strain RR4-56 chromosome, complete genome	4373045	3082292	3090883	4373045		Acidithiobacillus_phage(42.86%)	7	NA	NA
WP_165099996.1|3082292_3082706_-	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	36.5	5.3e-14
WP_165103715.1|3082702_3083944_-	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	54.3	1.0e-121
WP_165099998.1|3084332_3084767_+	peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	47.4	8.5e-31
WP_165100000.1|3084776_3088742_+	hypothetical protein	NA	A0A0B5A7K5	Paracoccus_phage	42.2	2.4e-265
WP_165100002.1|3088752_3089829_+	DUF2793 domain-containing protein	NA	A0A0B5A0F6	Paracoccus_phage	39.8	6.1e-54
WP_075784372.1|3089848_3090136_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	53.2	1.5e-12
WP_165100004.1|3090208_3090883_+	DUF882 domain-containing protein	NA	A0A0K1LLY2	Rhodobacter_phage	51.1	1.6e-44
>prophage 4
NZ_CP049056	Halovulum dunhuangense strain RR4-56 chromosome, complete genome	4373045	3123157	3174835	4373045	transposase,integrase	Planktothrix_phage(33.33%)	49	3115031:3115046	3177067:3177082
3115031:3115046	attL	GGCGACGCCGTCGATC	NA	NA	NA	NA
WP_165100080.1|3123157_3123865_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	32.7	2.9e-20
WP_165100083.1|3124164_3124941_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_165100086.1|3124988_3126698_+	amidase	NA	NA	NA	NA	NA
WP_165100089.1|3126690_3128262_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_165100092.1|3128269_3129211_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_165100095.1|3129210_3130137_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_165100097.1|3130151_3131237_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	1.5e-15
WP_165100100.1|3131233_3132358_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	29.2	6.9e-16
WP_165100102.1|3132354_3132999_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_165100105.1|3133025_3133829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100108.1|3133955_3134405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100111.1|3134551_3135565_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_165100114.1|3135718_3136390_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_165100116.1|3136509_3137562_+	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_165103732.1|3137757_3138762_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_165100119.1|3138774_3139314_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_165100123.1|3139310_3140588_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_165100125.1|3140817_3142305_+	amidase	NA	NA	NA	NA	NA
WP_165100127.1|3142455_3143241_+	helix-turn-helix domain-containing protein	NA	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	70.8	4.0e-95
WP_165100130.1|3144425_3145100_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_165100132.1|3145339_3145828_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
WP_165103735.1|3145920_3146742_+	allantoinase PuuE	NA	NA	NA	NA	NA
WP_165100135.1|3146758_3146962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100138.1|3147979_3148930_-	D-2-hydroxyacid dehydrogenase family protein	NA	M1NSB9	Streptococcus_phage	30.5	8.7e-20
WP_165100141.1|3149127_3149445_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	38.6	1.5e-05
WP_165100143.1|3149441_3149852_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_165100145.1|3149960_3150728_-	alpha/beta fold hydrolase	NA	A0A0M3UKI8	Mycobacterium_phage	33.7	2.6e-06
WP_165100148.1|3150732_3152034_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_165100151.1|3152035_3152551_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_165100153.1|3152547_3153549_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_165100156.1|3153989_3154763_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_165100159.1|3154995_3155703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100161.1|3155811_3156021_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165100164.1|3156017_3156206_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165100166.1|3156640_3157780_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_165100169.1|3157772_3159377_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_165103738.1|3159363_3159981_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_165100172.1|3159992_3160778_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_165100175.1|3161030_3162608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100178.1|3162640_3163612_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	3.9e-15
WP_165100181.1|3163592_3164480_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	6.2e-20
WP_165103740.1|3164482_3165418_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_165100184.1|3165414_3166287_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_165100187.1|3166315_3167779_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_165100189.1|3170753_3171383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165100192.1|3171491_3171701_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165100194.1|3171697_3171886_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_165100197.1|3172058_3173771_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_165100200.1|3173767_3174835_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3177067:3177082	attR	GATCGACGGCGTCGCC	NA	NA	NA	NA
