assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011035105.1_ASM1103510v1	NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	1	263919-264009	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	18	263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976|263952-263976	NZ_CP047021.1_2511310-2511286|NZ_CP047021.1_159815-159791|NZ_CP047021.1_159873-159849|NZ_CP047021.1_358956-358932|NZ_CP047021.1_1319459-1319435|NZ_CP047021.1_1711710-1711686|NZ_CP047021.1_1711767-1711743|NZ_CP047021.1_797109-797133|NZ_CP047021.1_802546-802570|NZ_CP047021.1_1036537-1036561|NZ_CP047021.1_1412015-1412039|NZ_CP047021.1_1964221-1964245|NZ_CP047021.1_809637-809661|NZ_CP047021.1_809755-809779|NZ_CP047021.1_914049-914073|NZ_CP047021.1_1323869-1323893|NZ_CP047021.1_1370339-1370363|NZ_CP047021.1_1624003-1624027	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|49aa|up_4|NZ_CP047021.1_258424_258571_+,NA	NA|699aa|up_9|NZ_CP047021.1_253014_255111_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|156aa|up_8|NZ_CP047021.1_255095_255563_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_7|NZ_CP047021.1_255585_255864_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_6|NZ_CP047021.1_256090_257350_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_5|NZ_CP047021.1_257367_258423_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_4|NZ_CP047021.1_258424_258571_+	NA	NA|348aa|up_3|NZ_CP047021.1_258594_259638_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_2|NZ_CP047021.1_260165_260882_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_1|NZ_CP047021.1_260874_261900_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|565aa|up_0|NZ_CP047021.1_261921_263616_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|390aa|down_0|NZ_CP047021.1_264430_265600_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|239aa|down_1|NZ_CP047021.1_265875_266592_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|down_2|NZ_CP047021.1_266584_267610_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|down_3|NZ_CP047021.1_267631_269320_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|down_4|NZ_CP047021.1_269352_271074_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|down_5|NZ_CP047021.1_271217_271892_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|down_6|NZ_CP047021.1_272151_273891_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|down_7|NZ_CP047021.1_273893_274634_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|down_8|NZ_CP047021.1_274746_275190_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_9|NZ_CP047021.1_275182_275884_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional
GCF_011035105.1_ASM1103510v1	NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2	828787-829772	1	CRT	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	GANTCNGANAGNGATTCAGA	20	0	0	NA	NA	NA	11	11	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|94aa|up_6|NZ_CP047021.1_823084_823366_+,NA|108aa|up_5|NZ_CP047021.1_823632_823956_-,NA|49aa|up_4|NZ_CP047021.1_823971_824118_-,NA|52aa|up_2|NZ_CP047021.1_825472_825628_+,NA|174aa|up_1|NZ_CP047021.1_825635_826157_+,NA|341aa|down_1|NZ_CP047021.1_832110_833133_+,NA|157aa|down_2|NZ_CP047021.1_833467_833938_+,NA|73aa|down_5|NZ_CP047021.1_836017_836236_-,NA|95aa|down_6|NZ_CP047021.1_836297_836582_-,NA|63aa|down_8|NZ_CP047021.1_837426_837615_-,NA|87aa|down_9|NZ_CP047021.1_837643_837904_-	NA|247aa|up_9|NZ_CP047021.1_818678_819419_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|up_8|NZ_CP047021.1_819452_821825_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|155aa|up_7|NZ_CP047021.1_821846_822311_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|94aa|up_6|NZ_CP047021.1_823084_823366_+	NA	NA|108aa|up_5|NZ_CP047021.1_823632_823956_-	NA	NA|49aa|up_4|NZ_CP047021.1_823971_824118_-	NA	NA|243aa|up_3|NZ_CP047021.1_824309_825038_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|52aa|up_2|NZ_CP047021.1_825472_825628_+	NA	NA|174aa|up_1|NZ_CP047021.1_825635_826157_+	NA	NA|177aa|up_0|NZ_CP047021.1_826295_826826_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|513aa|down_0|NZ_CP047021.1_830221_831760_+	pfam08764, Coagulase, Staphylococcus aureus coagulase	NA|341aa|down_1|NZ_CP047021.1_832110_833133_+	NA	NA|157aa|down_2|NZ_CP047021.1_833467_833938_+	NA	NA|229aa|down_3|NZ_CP047021.1_834278_834965_+	pfam00565, SNase, Staphylococcal nuclease homolog	NA|67aa|down_4|NZ_CP047021.1_835321_835522_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|73aa|down_5|NZ_CP047021.1_836017_836236_-	NA	NA|95aa|down_6|NZ_CP047021.1_836297_836582_-	NA	NA|190aa|down_7|NZ_CP047021.1_836669_837239_-	COG3863, COG3863, Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]	NA|63aa|down_8|NZ_CP047021.1_837426_837615_-	NA	NA|87aa|down_9|NZ_CP047021.1_837643_837904_-	NA
GCF_011035105.1_ASM1103510v1	NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	3	1921523-1921605	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	AATTTCTACAGACATTGCAAGTTGGGG	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|33aa|up_8|NZ_CP047021.1_1912872_1912971_-,NA|132aa|up_0|NZ_CP047021.1_1920785_1921181_-,NA|51aa|down_0|NZ_CP047021.1_1921783_1921936_-	NA|399aa|up_9|NZ_CP047021.1_1911385_1912582_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|33aa|up_8|NZ_CP047021.1_1912872_1912971_-	NA	NA|115aa|up_7|NZ_CP047021.1_1913464_1913809_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|NZ_CP047021.1_1913877_1915002_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|NZ_CP047021.1_1915180_1915645_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|NZ_CP047021.1_1916000_1916624_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|NZ_CP047021.1_1916645_1917758_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|NZ_CP047021.1_1917920_1918742_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|NZ_CP047021.1_1919204_1920590_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|NZ_CP047021.1_1920785_1921181_-	NA	NA|51aa|down_0|NZ_CP047021.1_1921783_1921936_-	NA	NA|200aa|down_1|NZ_CP047021.1_1921960_1922560_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|NZ_CP047021.1_1922718_1923189_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|down_3|NZ_CP047021.1_1923193_1924336_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|down_4|NZ_CP047021.1_1924471_1925200_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|NZ_CP047021.1_1925186_1926644_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|NZ_CP047021.1_1926901_1927963_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_7|NZ_CP047021.1_1936742_1937189_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_8|NZ_CP047021.1_1937285_1938236_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_9|NZ_CP047021.1_1938241_1938697_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCF_011035105.1_ASM1103510v1	NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	4	1928654-1928796	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|132aa|up_7|NZ_CP047021.1_1920785_1921181_-,NA|51aa|up_6|NZ_CP047021.1_1921783_1921936_-,NA	NA|274aa|up_9|NZ_CP047021.1_1917920_1918742_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047021.1_1919204_1920590_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047021.1_1920785_1921181_-	NA	NA|51aa|up_6|NZ_CP047021.1_1921783_1921936_-	NA	NA|200aa|up_5|NZ_CP047021.1_1921960_1922560_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047021.1_1922718_1923189_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047021.1_1923193_1924336_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047021.1_1924471_1925200_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047021.1_1925186_1926644_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047021.1_1926901_1927963_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047021.1_1936742_1937189_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047021.1_1937285_1938236_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047021.1_1938241_1938697_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047021.1_1938777_1940067_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047021.1_1940359_1941454_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP047021.1_1941645_1943382_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP047021.1_1943672_1944215_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP047021.1_1944517_1945555_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP047021.1_1945706_1946684_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP047021.1_1946944_1947781_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_011035105.1_ASM1103510v1	NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	5	2208401-2208486	4	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|364aa|up_9|NZ_CP047021.1_2194905_2195997_+,NA|35aa|up_8|NZ_CP047021.1_2196495_2196600_-,NA|53aa|up_7|NZ_CP047021.1_2197279_2197438_+,NA	NA|364aa|up_9|NZ_CP047021.1_2194905_2195997_+	NA	NA|35aa|up_8|NZ_CP047021.1_2196495_2196600_-	NA	NA|53aa|up_7|NZ_CP047021.1_2197279_2197438_+	NA	NA|286aa|up_6|NZ_CP047021.1_2198096_2198954_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP047021.1_2199020_2199803_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP047021.1_2200034_2201840_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP047021.1_2202520_2204059_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP047021.1_2204093_2206226_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP047021.1_2206237_2206672_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP047021.1_2206671_2207778_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP047021.1_2215870_2217226_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP047021.1_2217252_2218185_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP047021.1_2218186_2218996_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP047021.1_2219184_2220093_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP047021.1_2226410_2227475_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP047021.1_2227622_2229065_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP047021.1_2229387_2229861_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP047021.1_2229959_2231303_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP047021.1_2231481_2232165_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP047021.1_2232183_2233371_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
