The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	734044	741864	2791940		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|734044_735100_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|735099_735786_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|735760_736234_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|736575_737016_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_045177943.1|737295_737880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|737978_738692_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_045177940.1|738695_739115_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	1.1e-06
WP_000446724.1|739116_739785_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|740135_740729_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217790.1|740712_741864_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	4.6e-23
>prophage 2
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	753836	768567	2791940		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|753836_754895_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|755245_755788_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_045177934.1|756411_757329_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031835073.1|757419_757521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|757598_759104_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|759444_759945_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_045177931.1|759964_760831_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|761631_762030_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|761992_764098_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|764215_765187_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_086095140.1|765700_765856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|765894_766866_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|766852_767809_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616839.1|767805_768567_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	1011459	1019932	2791940		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1011459_1011942_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010406.1|1011928_1013053_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1013056_1013761_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1013760_1014024_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1014025_1014697_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032745.1|1014689_1016879_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_000483713.1|1016857_1018342_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030815.1|1018334_1019363_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1019365_1019932_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 4
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	1561399	1569711	2791940	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1561399_1562185_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1562310_1563201_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|1563210_1564557_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_103146935.1|1564670_1565771_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624570.1|1565773_1566451_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1566581_1567688_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217262.1|1567911_1569711_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
>prophage 5
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	1639209	1648252	2791940	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1639209_1639728_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_045177803.1|1639749_1642023_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	1.4e-63
WP_000749795.1|1642225_1644505_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1644779_1645040_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1645058_1646198_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1646220_1647246_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1647247_1648252_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	1773945	1895442	2791940	capsid,protease,transposase,tail,plate,integrase,head,portal,tRNA,holin,terminase	Staphylococcus_phage(94.17%)	135	1852956:1852974	1895501:1895519
WP_045177214.1|1773945_1780506_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	100.0	0.0e+00
WP_000836465.1|1780831_1781143_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_049296560.1|1781164_1783585_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	100.0	0.0e+00
WP_001025061.1|1783875_1785057_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_045173807.1|1785166_1786120_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764423.1|1786116_1786680_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	100.0	2.2e-103
WP_000757543.1|1786799_1787201_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1787771_1788599_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1788601_1788721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196345.1|1788832_1789834_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
WP_001008549.1|1789955_1790420_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159035.1|1790432_1791614_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493888.1|1791624_1792257_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_072384891.1|1792263_1793295_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	100.0	8.7e-199
WP_045177232.1|1793787_1795290_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1795812_1796127_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989117.1|1796126_1797419_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	100.0	5.0e-228
WP_000163235.1|1797436_1797832_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1798126_1798981_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1799256_1799481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1799679_1800150_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1800262_1800706_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030463.1|1800692_1801136_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	100.0	3.7e-58
WP_001168908.1|1801431_1802067_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1802507_1803221_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1803480_1803783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1804038_1804404_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1804400_1804754_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1805136_1805970_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1806181_1807090_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_086095161.1|1807214_1808408_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	100.0	1.5e-218
WP_000109906.1|1808779_1810372_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_072384924.1|1810624_1811371_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	100.0	4.4e-144
WP_000672015.1|1811375_1811849_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1811914_1812172_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_045177246.1|1812168_1813170_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	100.0	3.2e-190
WP_000348379.1|1813174_1814653_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
WP_072384923.1|1814811_1815267_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	100.0	2.7e-80
WP_072384920.1|1815569_1816220_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	100.0	7.2e-58
WP_049296627.1|1816300_1817296_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	100.0	3.3e-78
WP_045177256.1|1817371_1817998_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	100.0	6.2e-99
WP_045177258.1|1818038_1818380_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	100.0	2.9e-58
WP_045177260.1|1818480_1819053_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	100.0	1.7e-26
WP_045177261.1|1819250_1819808_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	100.0	3.0e-81
WP_000375477.1|1820181_1820358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1820368_1820752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1821355_1821499_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1821701_1821797_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1821919_1822021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1822368_1822728_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1823266_1827379_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072624.1|1828228_1829428_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
WP_001793440.1|1829420_1831160_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1831140_1831275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1831339_1832059_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1832209_1832926_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1833027_1833135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1833083_1833803_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038865.1|1833923_1834643_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	100.0	1.1e-131
WP_001039444.1|1834700_1835423_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039435.1|1835547_1836255_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1837218_1837785_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_072384919.1|1838258_1838957_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	100.0	1.3e-116
WP_000581552.1|1838953_1839715_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1839711_1840404_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1840426_1841800_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1841809_1842328_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1842343_1843588_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_045176870.1|1843580_1846574_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	100.0	0.0e+00
WP_000432510.1|1846638_1846782_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
WP_045176869.1|1847643_1848627_-	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	100.0	2.1e-186
WP_000473596.1|1848628_1849564_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_045176868.1|1850928_1851717_+	DUF1829 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	100.0	5.0e-146
1852956:1852974	attL	TTTACGGAAGGTAAGGGAT	NA	NA	NA	NA
WP_000498229.1|1853130_1853331_-	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	100.0	3.5e-32
WP_000125170.1|1853344_1853551_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	100.0	3.4e-30
WP_001035623.1|1854211_1854769_+	DUF4888 domain-containing protein	NA	A0A2H4PQT7	Staphylococcus_phage	100.0	3.8e-84
WP_072528212.1|1854829_1856242_-	CHAP domain-containing protein	NA	A0A2H4PQS4	Staphylococcus_phage	100.0	2.6e-286
WP_000351119.1|1856228_1856504_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398878.1|1856559_1856955_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_072507009.1|1856959_1858198_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.5	1.7e-209
WP_086203172.1|1858210_1860085_-	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	97.8	0.0e+00
WP_000466784.1|1860221_1860521_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_015990323.1|1860561_1860735_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000705919.1|1860744_1861122_-	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	100.0	5.3e-61
WP_086203170.1|1861121_1862945_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PCW2	Staphylococcus_phage	100.0	0.0e+00
WP_086203168.1|1862944_1864843_-	hypothetical protein	NA	A0A2H4PQM3	Staphylococcus_phage	100.0	0.0e+00
WP_086203167.1|1864855_1866742_-	peptidase	NA	A0A2H4PQL8	Staphylococcus_phage	100.0	0.0e+00
WP_031897669.1|1866752_1867688_-|tail	phage tail protein	tail	A0A0E3T9N1	Staphylococcus_phage	100.0	8.2e-180
WP_103146931.1|1867702_1870672_-|terminase	terminase	terminase	A0A2H4PQM1	Staphylococcus_phage	99.8	1.6e-266
WP_001580347.1|1870674_1871016_-	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
WP_086203165.1|1871036_1871531_-	hypothetical protein	NA	A0A2H4PQL7	Staphylococcus_phage	100.0	1.5e-87
WP_086203163.1|1871592_1872153_-|tail	phage tail protein	tail	A0A2H4PQK9	Staphylococcus_phage	100.0	2.7e-101
WP_015967254.1|1872139_1872577_-	DUF3168 domain-containing protein	NA	A0A2H4PQL6	Staphylococcus_phage	100.0	1.6e-77
WP_086203161.1|1872589_1873003_-	HK97 gp10 family phage protein	NA	A0A2I6PCV6	Staphylococcus_phage	100.0	3.4e-77
WP_000482986.1|1872989_1873325_-|head	phage head closure protein	head	A0A2H4PQL0	Staphylococcus_phage	100.0	3.0e-60
WP_015977674.1|1873317_1873632_-	ORF050	NA	A0A2H4PQL2	Staphylococcus_phage	100.0	2.6e-53
WP_070958233.1|1873631_1873958_-	Rho termination protein	NA	A0A2H4PQK8	Staphylococcus_phage	100.0	3.3e-51
WP_043044229.1|1873974_1874787_-|head	head protein	head	A0A2H4PQL1	Staphylococcus_phage	100.0	2.8e-144
WP_043044228.1|1874802_1875393_-	hypothetical protein	NA	A0A2H4PQL3	Staphylococcus_phage	100.0	2.2e-77
WP_086203159.1|1875490_1876471_-|capsid	minor capsid protein	capsid	A0A2H4PQJ8	Staphylococcus_phage	100.0	2.7e-181
WP_001159672.1|1876409_1877888_-|portal	phage portal protein	portal	A0A2H4PQK7	Staphylococcus_phage	100.0	7.9e-286
WP_031927907.1|1877841_1879050_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4PQK2	Staphylococcus_phage	100.0	2.7e-236
WP_072328463.1|1879042_1879537_-|terminase	terminase	terminase	A0A2I6PCU5	Staphylococcus_phage	100.0	1.3e-83
WP_029550564.1|1879626_1879938_-	hypothetical protein	NA	A0A2H4PQJ9	Staphylococcus_phage	100.0	2.2e-49
WP_000286968.1|1880287_1880689_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_072384802.1|1880689_1880878_-	transcriptional regulator	NA	A0A2H4PQK0	Staphylococcus_phage	100.0	2.7e-26
WP_001125015.1|1880865_1881066_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195817.1|1881040_1881229_-	DUF1381 domain-containing protein	NA	A0A2H4PQK3	Staphylococcus_phage	100.0	1.8e-25
WP_001282074.1|1881225_1881471_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061841.1|1881507_1882041_-	hypothetical protein	NA	A0A2H4PQJ1	Staphylococcus_phage	100.0	2.1e-95
WP_000889679.1|1882055_1882217_-	hypothetical protein	NA	A0A2H4PQJ5	Staphylococcus_phage	100.0	4.9e-24
WP_000454993.1|1882217_1882499_-	hypothetical protein	NA	A0A2I6PCT3	Staphylococcus_phage	100.0	1.4e-47
WP_000028424.1|1882499_1882673_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_001826875.1|1882662_1882914_-	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	100.0	8.4e-39
WP_000131389.1|1882928_1883171_-	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	100.0	6.6e-41
WP_000049798.1|1883733_1884138_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123681.1|1884148_1884370_-	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_000256589.1|1884383_1884542_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803028.1|1884535_1885309_-	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
WP_000190226.1|1885318_1886089_-	hypothetical protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
WP_016028252.1|1886134_1886794_+	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_016028251.1|1886903_1887575_-	hypothetical protein	NA	E0Y3P8	Staphylococcus_virus	100.0	5.8e-127
WP_011447037.1|1887587_1888088_-	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_000139737.1|1888171_1888951_-	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	100.0	2.5e-142
WP_000815401.1|1888943_1889165_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|1889174_1889435_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_061653281.1|1889526_1889688_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	98.1	5.6e-20
WP_000455728.1|1889701_1889911_-	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_072482615.1|1889935_1890643_-	phage repressor protein	NA	W5R8M8	Staphylococcus_phage	88.5	1.9e-112
WP_031916499.1|1890786_1891566_-	phage antirepressor KilAC domain-containing protein	NA	A0A2H4PQV4	Staphylococcus_phage	100.0	1.6e-144
WP_031916498.1|1891565_1891760_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	93.8	7.7e-24
WP_001055142.1|1892021_1892354_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	98.2	2.0e-56
WP_031916497.1|1892370_1893045_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	92.4	2.9e-118
WP_049311811.1|1893089_1894331_+	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_049311812.1|1894392_1895442_+|integrase	site-specific integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	90.0	2.0e-182
1895501:1895519	attR	TTTACGGAAGGTAAGGGAT	NA	NA	NA	NA
>prophage 7
NZ_CP047021	Staphylococcus aureus strain M2024 chromosome, complete genome	2791940	1975650	2073585	2791940	capsid,protease,tail,integrase,head,portal,tRNA,holin,terminase	Staphylococcus_phage(83.54%)	116	1973648:1973672	2062441:2062465
1973648:1973672	attL	TATGTTGGGGCCCCGCCAACTTGCA	NA	NA	NA	NA
WP_000027917.1|1975650_1977108_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1977109_1977412_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_086095136.1|1977778_1979317_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1979405_1980605_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774568.1|1980617_1982621_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1982624_1984817_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|1984813_1985506_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1985677_1985980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1986088_1987384_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827762.1|1988244_1989411_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1989441_1989768_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1990058_1990232_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1990212_1990815_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1991085_1991907_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1991899_1993369_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1993552_1994629_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1994648_1995443_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1995514_1995622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323160.1|1995632_1997195_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|1997399_1998497_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|1998868_1999429_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1999481_2000411_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_072384913.1|2000603_2000777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045176501.1|2000827_2002207_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181326.1|2002326_2003355_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2003624_2004026_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2004598_2004772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|2005222_2006263_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713071.1|2006319_2007162_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2007158_2007716_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2007775_2008300_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2008420_2008984_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2009049_2009790_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763045.1|2009789_2010662_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2010658_2011339_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991301.1|2011339_2012236_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2012232_2012613_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2012871_2013048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2013290_2013389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|2013588_2014875_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001823221.1|2015503_2017249_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2018206_2018386_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2018696_2018957_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2019009_2019360_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001110820.1|2019871_2020168_-	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000920038.1|2020857_2021349_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2021539_2022295_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2022306_2022561_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2022612_2022720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2022772_2022949_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|2023057_2023831_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2024203_2024578_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2024633_2024921_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2024966_2025119_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582129.1|2025111_2028894_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.3	0.0e+00
WP_001154317.1|2028909_2030400_-|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_001133523.1|2030399_2035049_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.3	0.0e+00
WP_000571956.1|2035104_2035227_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442605.1|2035286_2035733_-	hypothetical protein	NA	O80053	Staphylococcus_phage	92.6	1.3e-69
WP_000570648.1|2035799_2036753_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	95.0	4.0e-166
WP_000608371.1|2036753_2037134_-	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	85.7	2.9e-59
WP_000501242.1|2037130_2037508_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	98.4	3.4e-60
WP_000975314.1|2037507_2037843_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2037829_2038162_-|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2038170_2038329_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2038364_2039612_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2039699_2040284_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_011447040.1|2040276_2041467_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000644964.1|2041532_2041772_-	membrane protein	NA	A7TWC1	Staphylococcus_phage	98.7	1.2e-34
WP_000133304.1|2041746_2043441_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2043443_2043911_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2044039_2044384_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|2044399_2044852_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282756.1|2044966_2045428_-	hypothetical protein	NA	R9QT84	Staphylococcus_phage	99.3	2.5e-73
WP_001570807.1|2045450_2045651_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_031783376.1|2045650_2045776_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	81.6	7.3e-12
WP_001072793.1|2045768_2045972_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	97.0	2.0e-30
WP_000195826.1|2046160_2046367_-	DUF1381 domain-containing protein	NA	Q4ZCV6	Staphylococcus_virus	97.1	2.7e-19
WP_025920701.1|2046403_2046937_-	dUTPase	NA	E0Y3R2	Staphylococcus_virus	99.4	1.3e-94
WP_000889683.1|2046951_2047113_-	hypothetical protein	NA	A0A2I6PDW5	Staphylococcus_phage	100.0	2.4e-23
WP_000454994.1|2047113_2047395_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000028424.1|2047395_2047569_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_025174939.1|2047558_2047810_-	DUF1024 family protein	NA	E0Y3Q8	Staphylococcus_virus	100.0	1.4e-38
WP_000131381.1|2047824_2048067_-	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_000401978.1|2048453_2048858_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	91.0	6.9e-67
WP_000338527.1|2048866_2049085_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_000148335.1|2049091_2049985_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	100.0	8.4e-142
WP_000934760.1|2050014_2050485_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_071621397.1|2050485_2051103_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2051183_2052104_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_031783377.1|2052105_2054049_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.4	0.0e+00
WP_001205732.1|2054057_2054321_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2054329_2054590_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2054682_2054844_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2054840_2055161_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2055219_2055852_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2055866_2056007_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2056037_2056235_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148337.1|2056250_2057000_-	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000351243.1|2057056_2057596_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2057619_2057880_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338185.1|2057897_2058122_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	98.6	1.7e-35
WP_031783378.1|2058280_2059051_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	99.6	1.1e-140
WP_000705240.1|2059250_2059433_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2059468_2059615_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2059611_2060226_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2060333_2061371_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2062752_2063769_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
2062441:2062465	attR	TGCAAGTTGGCGGGGCCCCAACATA	NA	NA	NA	NA
WP_000791404.1|2063790_2064843_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000206635.1|2065278_2066502_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001789591.1|2066927_2067719_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2067780_2068692_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045085.1|2068852_2070160_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240645.1|2070690_2072307_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2072382_2072667_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2072841_2073585_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
