assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	1	283386-283470	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCACCCCAACTTGCATGGTCTGTAGAA	28	1	20	283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442|283414-283442	NZ_CP048431.1_1633726-1633754|NZ_CP048431.1_78826-78798|NZ_CP048431.1_536785-536813|NZ_CP048431.1_581671-581643|NZ_CP048431.1_581729-581701|NZ_CP048431.1_669427-669455|NZ_CP048431.1_879261-879289|NZ_CP048431.1_1095267-1095295|NZ_CP048431.1_1144351-1144323|NZ_CP048431.1_1194278-1194250|NZ_CP048431.1_1633671-1633699|NZ_CP048431.1_1718177-1718205|NZ_CP048431.1_1841510-1841538|NZ_CP048431.1_2137273-2137301|NZ_CP048431.1_2425951-2425979|NZ_CP048431.1_2460201-2460173|NZ_CP048431.1_791223-791251|NZ_CP048431.1_1718288-1718316|NZ_CP048431.1_2187798-2187770|NZ_CP048431.1_2270140-2270168	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|33aa|up_4|NZ_CP048431.1_278949_279048_+,NA	NA|165aa|up_9|NZ_CP048431.1_273966_274461_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP048431.1_274583_275531_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP048431.1_275618_276821_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP048431.1_277066_277567_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP048431.1_277707_278826_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|33aa|up_4|NZ_CP048431.1_278949_279048_+	NA	NA|352aa|up_3|NZ_CP048431.1_279141_280197_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP048431.1_280371_281061_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP048431.1_281365_281779_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP048431.1_281983_283282_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP048431.1_283733_284675_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP048431.1_284695_287893_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP048431.1_288342_289572_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP048431.1_289766_290624_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP048431.1_290623_291568_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP048431.1_291836_292805_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP048431.1_292826_294584_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP048431.1_296908_298270_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP048431.1_298617_299739_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP048431.1_299787_301056_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	2	791228-791311	2	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TTTCGAAATTCTCTGTGTTGGGGCCC	26	1	3	791254-791285|791254-791285|791254-791285	NZ_CP048431.1_536758-536789|NZ_CP048431.1_581698-581667|NZ_CP048431.1_581756-581725	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|182aa|up_9|NZ_CP048431.1_777517_778063_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|299aa|up_8|NZ_CP048431.1_778059_778956_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_7|NZ_CP048431.1_779372_780680_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_6|NZ_CP048431.1_780835_782911_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_5|NZ_CP048431.1_783084_783957_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|303aa|up_4|NZ_CP048431.1_784280_785189_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_3|NZ_CP048431.1_785210_786377_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|up_2|NZ_CP048431.1_786485_787253_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|up_1|NZ_CP048431.1_787236_788121_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|869aa|up_0|NZ_CP048431.1_788521_791128_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_0|NZ_CP048431.1_791597_791948_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_1|NZ_CP048431.1_792050_792788_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|down_2|NZ_CP048431.1_792787_793291_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|down_3|NZ_CP048431.1_793478_793754_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|down_4|NZ_CP048431.1_794188_795556_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_5|NZ_CP048431.1_795581_795914_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|down_6|NZ_CP048431.1_795900_797151_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|down_7|NZ_CP048431.1_797150_800717_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|down_8|NZ_CP048431.1_800863_801595_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_9|NZ_CP048431.1_801710_801944_-	PRK00982, acpP, acyl carrier protein; Provisional
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	3	875141-875327	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCC	19	3	35	875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875160-875196|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875216-875252|875272-875308|875272-875308|875272-875308|875272-875308|875272-875308|875272-875308|875272-875308|875272-875308|875272-875308	NZ_CP048431.1_581866-581830|NZ_CP048431.1_2022801-2022765|NZ_CP048431.1_536650-536686|NZ_CP048431.1_536706-536742|NZ_CP048431.1_669290-669326|NZ_CP048431.1_1235359-1235395|NZ_CP048431.1_2425816-2425852|NZ_CP048431.1_78788-78752|NZ_CP048431.1_1188806-1188770|NZ_CP048431.1_2022857-2022821|NZ_CP048431.1_2187933-2187897|NZ_CP048431.1_283451-283487|NZ_CP048431.1_80189-80153|NZ_CP048431.1_405351-405315|NZ_CP048431.1_669348-669384|NZ_CP048431.1_977750-977714|NZ_CP048431.1_1181653-1181617|NZ_CP048431.1_1633819-1633855|NZ_CP048431.1_2425872-2425908|NZ_CP048431.1_581808-581772|NZ_CP048431.1_2187877-2187841|NZ_CP048431.1_2460166-2460130|NZ_CP048431.1_875104-875140|NZ_CP048431.1_1144046-1144010|NZ_CP048431.1_1144102-1144066|NZ_CP048431.1_2295478-2295442|NZ_CP048431.1_2460222-2460186|NZ_CP048431.1_2270119-2270155|NZ_CP048431.1_69497-69461|NZ_CP048431.1_1144372-1144336|NZ_CP048431.1_1194299-1194263|NZ_CP048431.1_879240-879276|NZ_CP048431.1_1095246-1095282|NZ_CP048431.1_1841489-1841525|NZ_CP048431.1_2137252-2137288	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|76aa|up_6|NZ_CP048431.1_867899_868127_-,NA|75aa|down_0|NZ_CP048431.1_875482_875707_-,NA|49aa|down_1|NZ_CP048431.1_875663_875810_-,NA|78aa|down_3|NZ_CP048431.1_877918_878152_+,NA|62aa|down_4|NZ_CP048431.1_878773_878959_+,NA|169aa|down_7|NZ_CP048431.1_880867_881374_-	NA|45aa|up_9|NZ_CP048431.1_865164_865299_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP048431.1_866210_866399_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP048431.1_866647_867595_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP048431.1_867899_868127_-	NA	NA|497aa|up_5|NZ_CP048431.1_868434_869925_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP048431.1_870162_871095_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP048431.1_871117_872119_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP048431.1_872556_873282_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP048431.1_873376_874102_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP048431.1_874209_874926_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP048431.1_875482_875707_-	NA	NA|49aa|down_1|NZ_CP048431.1_875663_875810_-	NA	NA|320aa|down_2|NZ_CP048431.1_876482_877442_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP048431.1_877918_878152_+	NA	NA|62aa|down_4|NZ_CP048431.1_878773_878959_+	NA	NA|117aa|down_5|NZ_CP048431.1_879610_879961_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP048431.1_880111_880609_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP048431.1_880867_881374_-	NA	NA|134aa|down_8|NZ_CP048431.1_882044_882446_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|110aa|down_9|NZ_CP048431.1_882815_883145_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	4	1144352-1144433	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1144376-1144409	NZ_CP048431.1_581813-581846	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_1|NZ_CP048431.1_1145416_1145530_-	NA|417aa|up_9|NZ_CP048431.1_1134721_1135972_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP048431.1_1136077_1137385_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP048431.1_1137483_1138245_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP048431.1_1138572_1139424_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP048431.1_1139657_1139852_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP048431.1_1140205_1141027_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP048431.1_1141044_1141740_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP048431.1_1141732_1142758_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP048431.1_1143007_1143304_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP048431.1_1143296_1143683_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP048431.1_1144536_1145415_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP048431.1_1145416_1145530_-	NA	NA|127aa|down_2|NZ_CP048431.1_1145593_1145974_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP048431.1_1146131_1146488_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP048431.1_1146631_1146952_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP048431.1_1147101_1147641_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP048431.1_1147723_1148440_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP048431.1_1148587_1149010_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP048431.1_1149408_1149903_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP048431.1_1150057_1150675_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	5	1188784-1188866	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AATTTCTACAGACAATGCAAGTTGG	25	1	2	1188809-1188841|1188809-1188841	NZ_CP048431.1_78791-78823|NZ_CP048431.1_581694-581726	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|254aa|up_9|NZ_CP048431.1_1176930_1177692_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP048431.1_1177813_1179004_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP048431.1_1179142_1180153_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP048431.1_1180205_1181219_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP048431.1_1181922_1182552_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP048431.1_1183254_1184157_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP048431.1_1184399_1184987_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP048431.1_1185559_1186504_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP048431.1_1186614_1187610_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP048431.1_1187606_1188518_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP048431.1_1189283_1190219_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP048431.1_1190285_1191725_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP048431.1_1191732_1192218_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP048431.1_1192225_1193065_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP048431.1_1193070_1194003_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP048431.1_1194622_1197469_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP048431.1_1197476_1199462_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP048431.1_1199730_1199967_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP048431.1_1199963_1200614_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP048431.1_1200787_1201627_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	6	1351553-1351646	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_9|NZ_CP048431.1_1342285_1342489_+,NA|239aa|up_5|NZ_CP048431.1_1346381_1347098_-,NA|169aa|up_4|NZ_CP048431.1_1347259_1347766_-,NA|36aa|down_3|NZ_CP048431.1_1354896_1355004_-	NA|68aa|up_9|NZ_CP048431.1_1342285_1342489_+	NA	NA|75aa|up_8|NZ_CP048431.1_1342505_1342730_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_7|NZ_CP048431.1_1342923_1343853_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_6|NZ_CP048431.1_1344800_1345175_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_5|NZ_CP048431.1_1346381_1347098_-	NA	NA|169aa|up_4|NZ_CP048431.1_1347259_1347766_-	NA	NA|267aa|up_3|NZ_CP048431.1_1347901_1348702_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP048431.1_1348685_1349405_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP048431.1_1349459_1350410_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP048431.1_1350557_1351385_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP048431.1_1351761_1352397_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP048431.1_1352729_1354391_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP048431.1_1354387_1354771_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP048431.1_1354896_1355004_-	NA	NA|337aa|down_4|NZ_CP048431.1_1355078_1356089_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP048431.1_1356587_1357109_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP048431.1_1357136_1358432_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP048431.1_1358471_1358948_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP048431.1_1359116_1359653_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP048431.1_1359863_1360802_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	7	2137191-2137272	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	2137215-2137248|2137215-2137248	NZ_CP048431.1_581846-581813|NZ_CP048431.1_669310-669343	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|167aa|down_1|NZ_CP048431.1_2137939_2138440_-,NA|43aa|down_3|NZ_CP048431.1_2139361_2139490_+,NA|163aa|down_9|NZ_CP048431.1_2146369_2146858_+	NA|369aa|up_9|NZ_CP048431.1_2128644_2129751_+	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|447aa|up_8|NZ_CP048431.1_2129744_2131085_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|297aa|up_7|NZ_CP048431.1_2131181_2132072_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|277aa|up_6|NZ_CP048431.1_2132218_2133049_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|337aa|up_5|NZ_CP048431.1_2133068_2134079_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|235aa|up_4|NZ_CP048431.1_2134165_2134870_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|186aa|up_3|NZ_CP048431.1_2134862_2135420_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|100aa|up_2|NZ_CP048431.1_2135551_2135851_+	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_1|NZ_CP048431.1_2135870_2136692_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|126aa|up_0|NZ_CP048431.1_2136708_2137086_+	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|77aa|down_0|NZ_CP048431.1_2137489_2137720_-	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_1|NZ_CP048431.1_2137939_2138440_-	NA	NA|190aa|down_2|NZ_CP048431.1_2138637_2139207_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|43aa|down_3|NZ_CP048431.1_2139361_2139490_+	NA	NA|352aa|down_4|NZ_CP048431.1_2139616_2140672_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|234aa|down_5|NZ_CP048431.1_2141279_2141981_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|163aa|down_6|NZ_CP048431.1_2142256_2142745_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|604aa|down_7|NZ_CP048431.1_2143255_2145067_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|down_8|NZ_CP048431.1_2145427_2146195_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|down_9|NZ_CP048431.1_2146369_2146858_+	NA
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	8	2219935-2220067	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	ATTGAAGAAGATACAA	16	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_8|NZ_CP048431.1_2208147_2208351_+,NA|101aa|up_0|NZ_CP048431.1_2217010_2217313_+,NA|68aa|down_5|NZ_CP048431.1_2232767_2232971_+,NA|103aa|down_6|NZ_CP048431.1_2233078_2233387_-,NA|89aa|down_7|NZ_CP048431.1_2233530_2233797_-	NA|426aa|up_9|NZ_CP048431.1_2206676_2207954_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|68aa|up_8|NZ_CP048431.1_2208147_2208351_+	NA	NA|608aa|up_7|NZ_CP048431.1_2208862_2210686_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP048431.1_2210824_2211241_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP048431.1_2211471_2212164_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP048431.1_2212328_2213093_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP048431.1_2213246_2213927_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP048431.1_2213950_2215504_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP048431.1_2215620_2216979_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|101aa|up_0|NZ_CP048431.1_2217010_2217313_+	NA	NA|955aa|down_0|NZ_CP048431.1_2221217_2224082_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP048431.1_2224261_2225128_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP048431.1_2225338_2226082_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP048431.1_2226405_2226762_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|398aa|down_4|NZ_CP048431.1_2231563_2232757_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|68aa|down_5|NZ_CP048431.1_2232767_2232971_+	NA	NA|103aa|down_6|NZ_CP048431.1_2233078_2233387_-	NA	NA|89aa|down_7|NZ_CP048431.1_2233530_2233797_-	NA	NA|603aa|down_8|NZ_CP048431.1_2234080_2235889_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP048431.1_2236020_2236413_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_011032785.1_ASM1103278v1	NZ_CP048431	Staphylococcus aureus strain SA1428 chromosome, complete genome	9	2706420-2706509	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|52aa|down_2|NZ_CP048431.1_2707062_2707218_+,NA|68aa|down_3|NZ_CP048431.1_2707202_2707406_+,NA|128aa|down_4|NZ_CP048431.1_2707407_2707791_+,NA|115aa|down_7|NZ_CP048431.1_2710699_2711044_+,NA|114aa|down_9|NZ_CP048431.1_2711985_2712327_+	NA|190aa|up_9|NZ_CP048431.1_2696741_2697311_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_8|NZ_CP048431.1_2697546_2697681_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP048431.1_2698276_2699062_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP048431.1_2699422_2700049_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_5|NZ_CP048431.1_2700245_2701505_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP048431.1_2701529_2702273_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP048431.1_2702447_2702732_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP048431.1_2702807_2704424_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP048431.1_2704492_2705665_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP048431.1_2705678_2706353_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP048431.1_2706525_2706744_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP048431.1_2706748_2707066_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|52aa|down_2|NZ_CP048431.1_2707062_2707218_+	NA	NA|68aa|down_3|NZ_CP048431.1_2707202_2707406_+	NA	NA|128aa|down_4|NZ_CP048431.1_2707407_2707791_+	NA	NA|105aa|down_5|NZ_CP048431.1_2707791_2708106_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|751aa|down_6|NZ_CP048431.1_2708176_2710429_+	COG4983, COG4983, Uncharacterized conserved protein [Function unknown]	NA|115aa|down_7|NZ_CP048431.1_2710699_2711044_+	NA	NA|214aa|down_8|NZ_CP048431.1_2711045_2711687_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|down_9|NZ_CP048431.1_2711985_2712327_+	NA
