assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011022275.1_ASM1102227v1	NZ_CP048934	Escherichia coli strain 190693 chromosome, complete genome	1	937830-937959	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	Orphan	CCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACA	42	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	NA,NA	NA|339aa|up_9|NZ_CP048934.1_924472_925489_-	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|340aa|up_8|NZ_CP048934.1_925507_926527_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|298aa|up_7|NZ_CP048934.1_926836_927730_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_6|NZ_CP048934.1_927972_928968_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_5|NZ_CP048934.1_929125_930520_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_4|NZ_CP048934.1_930530_931751_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_3|NZ_CP048934.1_931747_933028_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|up_2|NZ_CP048934.1_933399_934878_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|up_1|NZ_CP048934.1_934879_936274_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|up_0|NZ_CP048934.1_936328_937699_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_0|NZ_CP048934.1_937979_939416_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_1|NZ_CP048934.1_939418_940642_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_2|NZ_CP048934.1_940638_941118_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_3|NZ_CP048934.1_941120_942086_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_4|NZ_CP048934.1_942088_943210_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_5|NZ_CP048934.1_943235_943784_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_6|NZ_CP048934.1_943799_944546_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|406aa|down_7|NZ_CP048934.1_944556_945774_-	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|406aa|down_8|NZ_CP048934.1_945748_946966_-	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|163aa|down_9|NZ_CP048934.1_946962_947451_-	PRK10191, PRK10191, putative acyl transferase; Provisional
GCF_011022275.1_ASM1102227v1	NZ_CP048934	Escherichia coli strain 190693 chromosome, complete genome	2	1662553-1663130	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP048934.1_1654365_1655127_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP048934.1_1655107_1656157_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP048934.1_1656153_1656633_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP048934.1_1656632_1657343_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP048934.1_1657361_1657673_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP048934.1_1657866_1658190_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP048934.1_1658239_1658845_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP048934.1_1658844_1660272_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP048934.1_1660273_1661182_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP048934.1_1661433_1662471_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP048934.1_1663226_1663520_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP048934.1_1663516_1664440_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP048934.1_1664436_1665087_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP048934.1_1665068_1665815_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP048934.1_1665825_1666881_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP048934.1_1666895_1667432_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP048934.1_1667428_1668991_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP048934.1_1669088_1671788_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP048934.1_1671982_1672135_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP048934.1_1672399_1673134_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_011022275.1_ASM1102227v1	NZ_CP048934	Escherichia coli strain 190693 chromosome, complete genome	3	1690268-1691272	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,15	16	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	NA,NA	NA|87aa|up_9|NZ_CP048934.1_1678739_1679000_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP048934.1_1679016_1679592_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP048934.1_1679726_1681075_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|298aa|up_6|NZ_CP048934.1_1681174_1682068_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP048934.1_1682031_1682811_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP048934.1_1682788_1684198_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP048934.1_1684219_1685674_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP048934.1_1685743_1686529_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP048934.1_1686847_1688125_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP048934.1_1688151_1689630_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP048934.1_1691610_1692282_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP048934.1_1693507_1694806_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP048934.1_1694893_1696531_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_CP048934.1_1696758_1697550_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_4|NZ_CP048934.1_1697621_1697957_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_5|NZ_CP048934.1_1697956_1698205_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_6|NZ_CP048934.1_1698282_1700517_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_7|NZ_CP048934.1_1700564_1701866_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP048934.1_1701922_1704679_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_9|NZ_CP048934.1_1704919_1706260_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_011022275.1_ASM1102227v1	NZ_CP048934	Escherichia coli strain 190693 chromosome, complete genome	4	4439357-4439498	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,TnsE_C,c2c9_V-U4	NA|36aa|up_4|NZ_CP048934.1_4435579_4435687_-,NA	NA|354aa|up_9|NZ_CP048934.1_4428820_4429882_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP048934.1_4429878_4430610_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP048934.1_4430624_4433084_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP048934.1_4433134_4433701_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP048934.1_4434090_4435374_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP048934.1_4435579_4435687_-	NA	NA|135aa|up_3|NZ_CP048934.1_4436067_4436472_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP048934.1_4436465_4436813_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP048934.1_4436812_4438579_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP048934.1_4438594_4439311_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP048934.1_4439660_4442462_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP048934.1_4442476_4443694_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP048934.1_4443787_4444954_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP048934.1_4444953_4445823_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|302aa|down_4|NZ_CP048934.1_4446488_4447394_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_5|NZ_CP048934.1_4447427_4448030_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_6|NZ_CP048934.1_4448039_4449692_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_7|NZ_CP048934.1_4449799_4451080_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_8|NZ_CP048934.1_4451240_4451558_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_9|NZ_CP048934.1_4451554_4452925_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
