assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	1	442549-442641	1	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	AACGCTCTTTATGAATCGCGTTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|169aa|up_9|NZ_CP048830.1_429223_429730_+,NA|62aa|up_7|NZ_CP048830.1_430979_431165_-,NA|71aa|up_4|NZ_CP048830.1_435671_435884_+,NA|673aa|up_3|NZ_CP048830.1_436050_438069_+,NA|57aa|down_1|NZ_CP048830.1_444790_444961_+,NA|65aa|down_5|NZ_CP048830.1_450324_450519_-,NA|48aa|down_7|NZ_CP048830.1_452269_452413_+,NA|97aa|down_9|NZ_CP048830.1_454103_454394_+	NA|169aa|up_9|NZ_CP048830.1_429223_429730_+	NA	NA|182aa|up_8|NZ_CP048830.1_429737_430283_+	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|62aa|up_7|NZ_CP048830.1_430979_431165_-	NA	NA|566aa|up_6|NZ_CP048830.1_431721_433419_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|549aa|up_5|NZ_CP048830.1_434014_435661_-	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM	NA|71aa|up_4|NZ_CP048830.1_435671_435884_+	NA	NA|673aa|up_3|NZ_CP048830.1_436050_438069_+	NA	NA|281aa|up_2|NZ_CP048830.1_438734_439577_-	cd01716, Hfq, bacterial Hfq-like	NA|183aa|up_1|NZ_CP048830.1_439680_440229_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|350aa|up_0|NZ_CP048830.1_440388_441438_+	pfam04773, FecR, FecR protein	NA|150aa|down_0|NZ_CP048830.1_443021_443471_-	pfam07681, DoxX, DoxX	NA|57aa|down_1|NZ_CP048830.1_444790_444961_+	NA	NA|632aa|down_2|NZ_CP048830.1_445077_446973_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|112aa|down_3|NZ_CP048830.1_447476_447812_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|273aa|down_4|NZ_CP048830.1_448314_449133_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|65aa|down_5|NZ_CP048830.1_450324_450519_-	NA	NA|204aa|down_6|NZ_CP048830.1_451330_451942_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|48aa|down_7|NZ_CP048830.1_452269_452413_+	NA	NA|394aa|down_8|NZ_CP048830.1_452811_453993_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|97aa|down_9|NZ_CP048830.1_454103_454394_+	NA
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	2	1133682-1133936	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas5,cas7,cas8b3,cas3,cas6,cas2,cas1	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Unclear	GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG,GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA,TCCGTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA	36,37,40	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	3,3,2	3	Unclear	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|61aa|up_6|NZ_CP048830.1_1125124_1125307_+,NA|87aa|up_5|NZ_CP048830.1_1126200_1126461_+,NA|69aa|down_0|NZ_CP048830.1_1133977_1134184_+,NA|71aa|down_5|NZ_CP048830.1_1138577_1138790_+,NA|129aa|down_6|NZ_CP048830.1_1138973_1139360_-,NA|184aa|down_7|NZ_CP048830.1_1139702_1140254_-	NA|384aa|up_9|NZ_CP048830.1_1121082_1122234_-	pfam13166, AAA_13, AAA domain	NA|394aa|up_8|NZ_CP048830.1_1122230_1123412_-	cd17281, RMtype1_S_HpyAXIII_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Helicobacter pylori 26695 S subunit (S	NA|514aa|up_7|NZ_CP048830.1_1123408_1124950_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|61aa|up_6|NZ_CP048830.1_1125124_1125307_+	NA	NA|87aa|up_5|NZ_CP048830.1_1126200_1126461_+	NA	cas5|208aa|up_4|NZ_CP048830.1_1126897_1127521_-	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	cas7|280aa|up_3|NZ_CP048830.1_1127541_1128381_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b3|629aa|up_2|NZ_CP048830.1_1128445_1130332_-	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas3|751aa|up_1|NZ_CP048830.1_1130339_1132592_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas6|211aa|up_0|NZ_CP048830.1_1132588_1133221_-	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	NA|69aa|down_0|NZ_CP048830.1_1133977_1134184_+	NA	cas2|95aa|down_1|NZ_CP048830.1_1134300_1134585_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|542aa|down_2|NZ_CP048830.1_1134584_1136210_-	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas6|70aa|down_3|NZ_CP048830.1_1136688_1136898_-	pfam09559, Cas6, Cas6 Crispr	NA|296aa|down_4|NZ_CP048830.1_1137428_1138316_-	pfam14284, PcfJ, PcfJ-like protein	NA|71aa|down_5|NZ_CP048830.1_1138577_1138790_+	NA	NA|129aa|down_6|NZ_CP048830.1_1138973_1139360_-	NA	NA|184aa|down_7|NZ_CP048830.1_1139702_1140254_-	NA	NA|499aa|down_8|NZ_CP048830.1_1141395_1142892_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|279aa|down_9|NZ_CP048830.1_1143456_1144293_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	3	1450923-1451227	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	4	4	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|89aa|up_9|NZ_CP048830.1_1438350_1438617_-,NA|349aa|up_7|NZ_CP048830.1_1440694_1441741_+,NA|56aa|up_5|NZ_CP048830.1_1443710_1443878_-,NA|301aa|up_1|NZ_CP048830.1_1447815_1448718_-,NA|237aa|down_4|NZ_CP048830.1_1458113_1458824_+,NA|153aa|down_9|NZ_CP048830.1_1466553_1467012_-	NA|89aa|up_9|NZ_CP048830.1_1438350_1438617_-	NA	NA|423aa|up_8|NZ_CP048830.1_1439326_1440595_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NZ_CP048830.1_1440694_1441741_+	NA	NA|500aa|up_6|NZ_CP048830.1_1442034_1443534_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NZ_CP048830.1_1443710_1443878_-	NA	NA|365aa|up_4|NZ_CP048830.1_1444696_1445791_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NZ_CP048830.1_1445847_1446915_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NZ_CP048830.1_1447119_1447584_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NZ_CP048830.1_1447815_1448718_-	NA	NA|161aa|up_0|NZ_CP048830.1_1450250_1450733_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NZ_CP048830.1_1452488_1453625_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NZ_CP048830.1_1453676_1454198_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NZ_CP048830.1_1454977_1455985_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NZ_CP048830.1_1457153_1457753_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NZ_CP048830.1_1458113_1458824_+	NA	NA|522aa|down_5|NZ_CP048830.1_1459898_1461464_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NZ_CP048830.1_1461478_1462273_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NZ_CP048830.1_1462300_1463695_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NZ_CP048830.1_1463929_1465912_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NZ_CP048830.1_1466553_1467012_-	NA
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	4	1451337-1451433	4	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|89aa|up_9|NZ_CP048830.1_1438350_1438617_-,NA|349aa|up_7|NZ_CP048830.1_1440694_1441741_+,NA|56aa|up_5|NZ_CP048830.1_1443710_1443878_-,NA|301aa|up_1|NZ_CP048830.1_1447815_1448718_-,NA|237aa|down_4|NZ_CP048830.1_1458113_1458824_+,NA|153aa|down_9|NZ_CP048830.1_1466553_1467012_-	NA|89aa|up_9|NZ_CP048830.1_1438350_1438617_-	NA	NA|423aa|up_8|NZ_CP048830.1_1439326_1440595_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NZ_CP048830.1_1440694_1441741_+	NA	NA|500aa|up_6|NZ_CP048830.1_1442034_1443534_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NZ_CP048830.1_1443710_1443878_-	NA	NA|365aa|up_4|NZ_CP048830.1_1444696_1445791_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NZ_CP048830.1_1445847_1446915_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NZ_CP048830.1_1447119_1447584_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NZ_CP048830.1_1447815_1448718_-	NA	NA|161aa|up_0|NZ_CP048830.1_1450250_1450733_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NZ_CP048830.1_1452488_1453625_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NZ_CP048830.1_1453676_1454198_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NZ_CP048830.1_1454977_1455985_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NZ_CP048830.1_1457153_1457753_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NZ_CP048830.1_1458113_1458824_+	NA	NA|522aa|down_5|NZ_CP048830.1_1459898_1461464_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NZ_CP048830.1_1461478_1462273_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NZ_CP048830.1_1462300_1463695_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NZ_CP048830.1_1463929_1465912_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NZ_CP048830.1_1466553_1467012_-	NA
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	5	1615015-1615108	5	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	AGGAAAGCGTTGTGTTGAGTTTT	23	1	2	1615038-1615085|1615038-1615085	NZ_CP048830.1_1150736-1150689|NZ_CP048830.1_3356383-3356430	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|54aa|up_8|NZ_CP048830.1_1604772_1604934_+,NA|135aa|up_6|NZ_CP048830.1_1607130_1607535_+,NA|53aa|down_9|NZ_CP048830.1_1626388_1626547_+	NA|352aa|up_9|NZ_CP048830.1_1602667_1603723_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|54aa|up_8|NZ_CP048830.1_1604772_1604934_+	NA	NA|368aa|up_7|NZ_CP048830.1_1605199_1606303_+	TIGR03699, menaquin_MqnC, dehypoxanthine futalosine cyclase	NA|135aa|up_6|NZ_CP048830.1_1607130_1607535_+	NA	NA|410aa|up_5|NZ_CP048830.1_1607518_1608748_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|up_4|NZ_CP048830.1_1608861_1609671_-	smart00909, Germane, Sporulation and spore germination	NA|225aa|up_3|NZ_CP048830.1_1609714_1610389_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|417aa|up_2|NZ_CP048830.1_1610472_1611723_+	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism]	NA|375aa|up_1|NZ_CP048830.1_1611715_1612840_+	TIGR01205, D-alanine--D-alanine_ligase, D-alanine--D-alanine ligase	NA|229aa|up_0|NZ_CP048830.1_1612852_1613539_+	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|371aa|down_0|NZ_CP048830.1_1615274_1616387_-	PRK04531, PRK04531, acetylglutamate kinase; Provisional	NA|417aa|down_1|NZ_CP048830.1_1616402_1617653_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|156aa|down_2|NZ_CP048830.1_1617649_1618117_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|373aa|down_3|NZ_CP048830.1_1618263_1619382_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|344aa|down_4|NZ_CP048830.1_1619395_1620427_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|430aa|down_5|NZ_CP048830.1_1620423_1621713_+	cd01087, Prolidase, Prolidase	NA|188aa|down_6|NZ_CP048830.1_1622064_1622628_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|179aa|down_7|NZ_CP048830.1_1623353_1623890_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|730aa|down_8|NZ_CP048830.1_1624230_1626420_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|53aa|down_9|NZ_CP048830.1_1626388_1626547_+	NA
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	6	1691033-1691133	6	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	GAGTTCCCACAATTTACACGAGATC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|289aa|up_7|NZ_CP048830.1_1682606_1683473_-,NA|159aa|down_3|NZ_CP048830.1_1697124_1697601_+,NA|118aa|down_6|NZ_CP048830.1_1700548_1700902_+,NA|351aa|down_7|NZ_CP048830.1_1700947_1702000_+	NA|262aa|up_9|NZ_CP048830.1_1680269_1681055_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|399aa|up_8|NZ_CP048830.1_1681061_1682258_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|289aa|up_7|NZ_CP048830.1_1682606_1683473_-	NA	NA|742aa|up_6|NZ_CP048830.1_1683535_1685761_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|109aa|up_5|NZ_CP048830.1_1686123_1686450_+	pfam06155, DUF971, Protein of unknown function (DUF971)	NA|355aa|up_4|NZ_CP048830.1_1687017_1688082_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|274aa|up_3|NZ_CP048830.1_1688078_1688900_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|268aa|up_2|NZ_CP048830.1_1688932_1689736_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|88aa|up_1|NZ_CP048830.1_1689732_1689996_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|260aa|up_0|NZ_CP048830.1_1690002_1690782_+	pfam01311, Bac_export_1, Bacterial export proteins, family 1	NA|706aa|down_0|NZ_CP048830.1_1692728_1694846_+	pfam00771, FHIPEP, FHIPEP family	NA|427aa|down_1|NZ_CP048830.1_1694898_1696179_+	PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional	NA|305aa|down_2|NZ_CP048830.1_1696206_1697121_+	cd02038, FlhG-like, MinD-like ATPase FlhG	NA|159aa|down_3|NZ_CP048830.1_1697124_1697601_+	NA	NA|267aa|down_4|NZ_CP048830.1_1697728_1698529_+	PRK06288, PRK06288, RNA polymerase sigma factor WhiG; Reviewed	NA|662aa|down_5|NZ_CP048830.1_1698554_1700540_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|118aa|down_6|NZ_CP048830.1_1700548_1700902_+	NA	NA|351aa|down_7|NZ_CP048830.1_1700947_1702000_+	NA	NA|94aa|down_8|NZ_CP048830.1_1701999_1702281_+	PRK04323, PRK04323, hypothetical protein; Provisional	NA|194aa|down_9|NZ_CP048830.1_1702277_1702859_+	PRK14737, gmk, guanylate kinase; Provisional
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	7	2011975-2012065	7	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	TAGGAAGTGATGCATTGAGTTCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|89aa|up_3|NZ_CP048830.1_2006299_2006566_+,NA|100aa|down_0|NZ_CP048830.1_2012142_2012442_-,NA|92aa|down_5|NZ_CP048830.1_2017801_2018077_-,NA|244aa|down_7|NZ_CP048830.1_2019055_2019787_-,NA|209aa|down_8|NZ_CP048830.1_2019817_2020444_-	NA|302aa|up_9|NZ_CP048830.1_2000244_2001150_-	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA|223aa|up_8|NZ_CP048830.1_2001593_2002262_-	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs	NA|222aa|up_7|NZ_CP048830.1_2002344_2003010_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|225aa|up_6|NZ_CP048830.1_2003025_2003700_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|227aa|up_5|NZ_CP048830.1_2003712_2004393_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|366aa|up_4|NZ_CP048830.1_2004718_2005816_-	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|89aa|up_3|NZ_CP048830.1_2006299_2006566_+	NA	NA|437aa|up_2|NZ_CP048830.1_2006685_2007996_-	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|445aa|up_1|NZ_CP048830.1_2008236_2009571_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|389aa|up_0|NZ_CP048830.1_2009670_2010837_+	NF033165, lipo_LipL45, lipoprotein LipL45	NA|100aa|down_0|NZ_CP048830.1_2012142_2012442_-	NA	NA|302aa|down_1|NZ_CP048830.1_2012429_2013335_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|247aa|down_2|NZ_CP048830.1_2013434_2014175_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|473aa|down_3|NZ_CP048830.1_2014171_2015590_+	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|349aa|down_4|NZ_CP048830.1_2015603_2016650_+	pfam07611, DUF1574, Protein of unknown function (DUF1574)	NA|92aa|down_5|NZ_CP048830.1_2017801_2018077_-	NA	NA|215aa|down_6|NZ_CP048830.1_2018231_2018876_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|244aa|down_7|NZ_CP048830.1_2019055_2019787_-	NA	NA|209aa|down_8|NZ_CP048830.1_2019817_2020444_-	NA	NA|512aa|down_9|NZ_CP048830.1_2020446_2021982_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	8	2798121-2798212	8	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	ATTACGTCTCTTTGTAACTCACACTTGTT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|175aa|up_9|NZ_CP048830.1_2786628_2787153_+,NA|176aa|up_1|NZ_CP048830.1_2796514_2797042_+,NA|185aa|down_5|NZ_CP048830.1_2808866_2809421_+	NA|175aa|up_9|NZ_CP048830.1_2786628_2787153_+	NA	NA|222aa|up_8|NZ_CP048830.1_2787149_2787815_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|299aa|up_7|NZ_CP048830.1_2787811_2788708_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|117aa|up_6|NZ_CP048830.1_2788704_2789055_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|337aa|up_5|NZ_CP048830.1_2789071_2790082_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|438aa|up_4|NZ_CP048830.1_2791840_2793154_+	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|137aa|up_3|NZ_CP048830.1_2793453_2793864_+	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|430aa|up_2|NZ_CP048830.1_2795214_2796504_+	cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases	NA|176aa|up_1|NZ_CP048830.1_2796514_2797042_+	NA	NA|270aa|up_0|NZ_CP048830.1_2797016_2797826_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|253aa|down_0|NZ_CP048830.1_2798270_2799029_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|285aa|down_1|NZ_CP048830.1_2799395_2800250_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|594aa|down_2|NZ_CP048830.1_2800678_2802460_+	pfam01144, CoA_trans, Coenzyme A transferase	NA|323aa|down_3|NZ_CP048830.1_2802493_2803462_+	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|1781aa|down_4|NZ_CP048830.1_2803486_2808829_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|185aa|down_5|NZ_CP048830.1_2808866_2809421_+	NA	NA|124aa|down_6|NZ_CP048830.1_2809423_2809795_+	pfam09345, DUF1987, Domain of unknown function (DUF1987)	NA|487aa|down_7|NZ_CP048830.1_2809823_2811284_+	cd07302, CHD, cyclase homology domain	NA|153aa|down_8|NZ_CP048830.1_2812153_2812612_-	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|383aa|down_9|NZ_CP048830.1_2813000_2814148_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	9	3087120-3087222	9	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	TTTTTTAATTTCATATCAAAATCTTGATCGTTTTAAGAG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA,NA|81aa|down_1|NZ_CP048830.1_3088473_3088716_+,NA|69aa|down_3|NZ_CP048830.1_3089587_3089794_-	NA|313aa|up_9|NZ_CP048830.1_3076138_3077077_-	PRK13022, secF, protein translocase subunit SecF	NA|643aa|up_8|NZ_CP048830.1_3077081_3079010_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|249aa|up_7|NZ_CP048830.1_3079020_3079767_-	TIGR04420, Sec_Non_Glob, Sec region non-globular protein	NA|109aa|up_6|NZ_CP048830.1_3079763_3080090_-	pfam02699, YajC, Preprotein translocase subunit	NA|337aa|up_5|NZ_CP048830.1_3080145_3081156_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|249aa|up_4|NZ_CP048830.1_3081130_3081877_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|438aa|up_3|NZ_CP048830.1_3081873_3083187_-	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|372aa|up_2|NZ_CP048830.1_3083195_3084311_-	pfam13413, HTH_25, Helix-turn-helix domain	NA|258aa|up_1|NZ_CP048830.1_3084332_3085106_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|390aa|up_0|NZ_CP048830.1_3085564_3086734_-	pfam07614, DUF1577, Protein of unknown function (DUF1577)	NA|144aa|down_0|NZ_CP048830.1_3087942_3088374_-	pfam13671, AAA_33, AAA domain	NA|81aa|down_1|NZ_CP048830.1_3088473_3088716_+	NA	NA|222aa|down_2|NZ_CP048830.1_3088894_3089560_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|69aa|down_3|NZ_CP048830.1_3089587_3089794_-	NA	NA|567aa|down_4|NZ_CP048830.1_3089729_3091430_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|240aa|down_5|NZ_CP048830.1_3091570_3092290_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|301aa|down_6|NZ_CP048830.1_3092267_3093170_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|340aa|down_7|NZ_CP048830.1_3094496_3095516_-	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|345aa|down_8|NZ_CP048830.1_3095601_3096636_+	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein	NA|577aa|down_9|NZ_CP048830.1_3096642_3098373_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	10	3391124-3391225	10	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	CTGACAAATTCTAAGTTGTAAGAGTTCCCACA	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA,NA|172aa|down_7|NZ_CP048830.1_3401713_3402229_-	NA|357aa|up_9|NZ_CP048830.1_3379511_3380582_-	PRK12299, obgE, GTPase CgtA; Reviewed	NA|85aa|up_8|NZ_CP048830.1_3380696_3380951_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_7|NZ_CP048830.1_3380940_3381267_-	PRK14553, PRK14553, ribosomal-processing cysteine protease Prp	NA|105aa|up_6|NZ_CP048830.1_3381263_3381578_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|287aa|up_5|NZ_CP048830.1_3384012_3384873_-	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|up_4|NZ_CP048830.1_3384937_3385852_-	pfam09674, DUF2400, Protein of unknown function (DUF2400)	NA|299aa|up_3|NZ_CP048830.1_3385848_3386745_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|579aa|up_2|NZ_CP048830.1_3387764_3389501_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|95aa|up_1|NZ_CP048830.1_3389515_3389800_-	TIGR04453, Lepto_8Cys, Cys-rich protein, LA_1312 family	NA|354aa|up_0|NZ_CP048830.1_3389830_3390892_-	PRK14465, PRK14465, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|253aa|down_0|NZ_CP048830.1_3391982_3392741_-	PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional	NA|111aa|down_1|NZ_CP048830.1_3392747_3393080_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|464aa|down_2|NZ_CP048830.1_3393162_3394554_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|83aa|down_3|NZ_CP048830.1_3396122_3396371_+	pfam07599, DUF1563, Protein of unknown function (DUF1563)	NA|632aa|down_4|NZ_CP048830.1_3396556_3398452_+	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|258aa|down_5|NZ_CP048830.1_3399080_3399854_-	PRK13318, PRK13318, type III pantothenate kinase	NA|253aa|down_6|NZ_CP048830.1_3399855_3400614_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|172aa|down_7|NZ_CP048830.1_3401713_3402229_-	NA	NA|442aa|down_8|NZ_CP048830.1_3402324_3403650_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|287aa|down_9|NZ_CP048830.1_3403686_3404547_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)
GCF_010978155.1_ASM1097815v1	NZ_CP048830	Leptospira interrogans serovar Copenhageni strain SK1 chromosome I, complete sequence	11	3994748-3994843	11	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	Orphan	AGGAAAGCGTTGTGTTGAGTTTTCC	25	1	2	3994773-3994818|3994773-3994818	NZ_CP048830.1_1150734-1150689|NZ_CP048830.1_3356385-3356430	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,cas1,DinG,cas8c,cas4,Cas9_archaeal	NA|192aa|up_8|NZ_CP048830.1_3984109_3984685_-,NA|140aa|up_7|NZ_CP048830.1_3984973_3985393_+,NA|372aa|up_6|NZ_CP048830.1_3985424_3986540_+,NA|124aa|up_0|NZ_CP048830.1_3994150_3994522_+,NA|163aa|down_0|NZ_CP048830.1_3995729_3996218_-,NA|112aa|down_1|NZ_CP048830.1_3996227_3996563_-,NA|48aa|down_8|NZ_CP048830.1_4002326_4002470_+	NA|399aa|up_9|NZ_CP048830.1_3982844_3984041_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|192aa|up_8|NZ_CP048830.1_3984109_3984685_-	NA	NA|140aa|up_7|NZ_CP048830.1_3984973_3985393_+	NA	NA|372aa|up_6|NZ_CP048830.1_3985424_3986540_+	NA	NA|465aa|up_5|NZ_CP048830.1_3986981_3988376_-	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|163aa|up_4|NZ_CP048830.1_3989482_3989971_-	pfam15428, Imm26, Immunity protein 26	NA|596aa|up_3|NZ_CP048830.1_3990119_3991907_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|433aa|up_2|NZ_CP048830.1_3992157_3993456_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|219aa|up_1|NZ_CP048830.1_3993452_3994109_+	cd16373, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|124aa|up_0|NZ_CP048830.1_3994150_3994522_+	NA	NA|163aa|down_0|NZ_CP048830.1_3995729_3996218_-	NA	NA|112aa|down_1|NZ_CP048830.1_3996227_3996563_-	NA	NA|184aa|down_2|NZ_CP048830.1_3997029_3997581_-	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|341aa|down_3|NZ_CP048830.1_3997585_3998608_-	cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1	NA|109aa|down_4|NZ_CP048830.1_3998604_3998931_-	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|156aa|down_5|NZ_CP048830.1_3999351_3999819_+	pfam11827, DUF3347, Protein of unknown function (DUF3347)	NA|330aa|down_6|NZ_CP048830.1_3999797_4000787_+	pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding	NA|261aa|down_7|NZ_CP048830.1_4000795_4001578_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|48aa|down_8|NZ_CP048830.1_4002326_4002470_+	NA	NA|491aa|down_9|NZ_CP048830.1_4002630_4004103_-	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional
