assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010977575.1_ASM1097757v1	NZ_CP048812	Halomonas socia strain CKY01 chromosome, complete genome	1	1094982-1099404	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	Type I-E	CGGTTGAGCCCCGCGCATGCGGGGATCGG,CGGTTGAGCCCCGCGCATGCGGGGATCGG,CGGTTGAGCCCCGCGCATGCGGGGATCGG,CGGTTGAGCCCCGCGCATGCGGGGATCGG	29,29,29,29	0	0	NA	NA	NA:NA:NA:NA	72,72,56,56	72	TypeI-E	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	NA|85aa|up_4|NZ_CP048812.1_1092841_1093096_-,NA	NA|319aa|up_9|NZ_CP048812.1_1087105_1088062_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|301aa|up_8|NZ_CP048812.1_1088274_1089177_-	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|332aa|up_7|NZ_CP048812.1_1089279_1090275_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|406aa|up_6|NZ_CP048812.1_1090369_1091587_-	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|347aa|up_5|NZ_CP048812.1_1091804_1092845_+	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase	NA|85aa|up_4|NZ_CP048812.1_1092841_1093096_-	NA	NA|193aa|up_3|NZ_CP048812.1_1093197_1093776_-	pfam13875, DUF4202, Domain of unknown function (DUF4202)	NA|108aa|up_2|NZ_CP048812.1_1093914_1094238_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|87aa|up_1|NZ_CP048812.1_1094332_1094593_+	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|90aa|up_0|NZ_CP048812.1_1094579_1094849_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	cas2|98aa|down_0|NZ_CP048812.1_1099514_1099808_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP048812.1_1099809_1100730_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|233aa|down_2|NZ_CP048812.1_1100733_1101432_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|261aa|down_3|NZ_CP048812.1_1101431_1102214_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|363aa|down_4|NZ_CP048812.1_1102225_1103314_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|233aa|down_5|NZ_CP048812.1_1103370_1104069_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|566aa|down_6|NZ_CP048812.1_1104065_1105763_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|889aa|down_7|NZ_CP048812.1_1105847_1108514_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|323aa|down_8|NZ_CP048812.1_1108844_1109813_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|228aa|down_9|NZ_CP048812.1_1109891_1110575_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU
GCF_010977575.1_ASM1097757v1	NZ_CP048812	Halomonas socia strain CKY01 chromosome, complete genome	2	2263719-2263836	2	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	Orphan	CGGCGCCATCGCGACTGAAGTCGCTCCCACATTGGTTGGT	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	NA|135aa|up_9|NZ_CP048812.1_2250278_2250683_-,NA	NA|135aa|up_9|NZ_CP048812.1_2250278_2250683_-	NA	NA|707aa|up_8|NZ_CP048812.1_2251732_2253853_-	pfam14871, GHL6, Hypothetical glycosyl hydrolase 6	NA|358aa|up_7|NZ_CP048812.1_2253905_2254979_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|342aa|up_6|NZ_CP048812.1_2254968_2255994_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|292aa|up_5|NZ_CP048812.1_2255990_2256866_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|up_4|NZ_CP048812.1_2256888_2257830_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|530aa|up_3|NZ_CP048812.1_2257907_2259497_-	cd08508, PBP2_NikA_DppA_OppA_like_1, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|126aa|up_2|NZ_CP048812.1_2259701_2260079_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|193aa|up_1|NZ_CP048812.1_2260021_2260600_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|271aa|up_0|NZ_CP048812.1_2260631_2261444_-	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|1286aa|down_0|NZ_CP048812.1_2264495_2268353_-	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|1221aa|down_1|NZ_CP048812.1_2268349_2272012_-	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|251aa|down_2|NZ_CP048812.1_2272114_2272867_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|349aa|down_3|NZ_CP048812.1_2272859_2273906_-	pfam01032, FecCD, FecCD transport family	NA|325aa|down_4|NZ_CP048812.1_2273895_2274870_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|98aa|down_5|NZ_CP048812.1_2275063_2275357_-	pfam09313, DUF1971, Domain of unknown function (DUF1971)	NA|326aa|down_6|NZ_CP048812.1_2275353_2276331_-	pfam04016, DUF364, Putative heavy-metal chelation	NA|700aa|down_7|NZ_CP048812.1_2276343_2278443_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|245aa|down_8|NZ_CP048812.1_2278546_2279281_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|508aa|down_9|NZ_CP048812.1_2279411_2280935_-	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional
GCF_010977575.1_ASM1097757v1	NZ_CP048812	Halomonas socia strain CKY01 chromosome, complete genome	3	2455105-2455210	3	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	Orphan	CTATGGCTGCCTCGAGTACTGGGCTA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	NA,NA|133aa|down_0|NZ_CP048812.1_2455247_2455646_+	NA|268aa|up_9|NZ_CP048812.1_2445080_2445884_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|208aa|up_8|NZ_CP048812.1_2445874_2446498_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|267aa|up_7|NZ_CP048812.1_2446674_2447475_+	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|223aa|up_6|NZ_CP048812.1_2447474_2448143_+	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|389aa|up_5|NZ_CP048812.1_2448105_2449272_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|526aa|up_4|NZ_CP048812.1_2449268_2450846_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|123aa|up_3|NZ_CP048812.1_2450854_2451223_-	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|up_2|NZ_CP048812.1_2451482_2452013_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|337aa|up_1|NZ_CP048812.1_2452289_2453300_+	cd13678, PBP2_TRAP_DctP10, Substrate-binding component of Tripartite ATP-independent Periplasmic transporter DctP10;  the type 2 periplasmic-binding protein fold	NA|160aa|up_0|NZ_CP048812.1_2453366_2453846_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|133aa|down_0|NZ_CP048812.1_2455247_2455646_+	NA	NA|462aa|down_1|NZ_CP048812.1_2455829_2457215_+	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism]	NA|328aa|down_2|NZ_CP048812.1_2457515_2458499_+	cd13568, PBP2_TAXI_TRAP_like_3, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|865aa|down_3|NZ_CP048812.1_2458673_2461268_+	COG4666, COG4666, TRAP-type uncharacterized transport system, fused permease components [General function prediction only]	NA|143aa|down_4|NZ_CP048812.1_2461286_2461715_+	pfam00582, Usp, Universal stress protein family	NA|279aa|down_5|NZ_CP048812.1_2461792_2462629_-	PRK07474, PRK07474, sulfur oxidation protein SoxY; Provisional	NA|353aa|down_6|NZ_CP048812.1_2462663_2463722_-	pfam04143, Sulf_transp, Sulphur transport	NA|432aa|down_7|NZ_CP048812.1_2463792_2465088_-	pfam09242, FCSD-flav_bind, Flavocytochrome c sulphide dehydrogenase, flavin-binding	NA|110aa|down_8|NZ_CP048812.1_2465128_2465458_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|270aa|down_9|NZ_CP048812.1_2465778_2466588_+	pfam09955, DUF2189, Predicted integral membrane protein (DUF2189)
GCF_010977575.1_ASM1097757v1	NZ_CP048812	Halomonas socia strain CKY01 chromosome, complete genome	4	2668589-2668688	4	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	Orphan	TCGAATCTCGTTTCCCGCTCCAAGCA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	NA,NA|56aa|down_8|NZ_CP048812.1_2676435_2676603_-	NA|345aa|up_9|NZ_CP048812.1_2658814_2659849_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|174aa|up_8|NZ_CP048812.1_2659917_2660439_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|107aa|up_7|NZ_CP048812.1_2662031_2662352_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|121aa|up_6|NZ_CP048812.1_2662297_2662660_+	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain	NA|94aa|up_5|NZ_CP048812.1_2662662_2662944_-	cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins	NA|387aa|up_4|NZ_CP048812.1_2663074_2664235_+	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|301aa|up_3|NZ_CP048812.1_2664323_2665226_-	PRK05457, PRK05457, protease HtpX	NA|409aa|up_2|NZ_CP048812.1_2665319_2666546_-	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|318aa|up_1|NZ_CP048812.1_2666592_2667546_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|135aa|up_0|NZ_CP048812.1_2667632_2668037_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|322aa|down_0|NZ_CP048812.1_2668975_2669941_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|258aa|down_1|NZ_CP048812.1_2669937_2670711_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|279aa|down_2|NZ_CP048812.1_2670707_2671544_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|187aa|down_3|NZ_CP048812.1_2671596_2672157_+	PRK10828, PRK10828, putative oxidoreductase; Provisional	NA|173aa|down_4|NZ_CP048812.1_2672156_2672675_+	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm)	NA|102aa|down_5|NZ_CP048812.1_2673693_2673999_+	COG3636, COG3636, Predicted transcriptional regulator [Transcription]	NA|188aa|down_6|NZ_CP048812.1_2674446_2675010_+	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme	NA|458aa|down_7|NZ_CP048812.1_2674977_2676351_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|56aa|down_8|NZ_CP048812.1_2676435_2676603_-	NA	NA|780aa|down_9|NZ_CP048812.1_2676599_2678939_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
GCF_010977575.1_ASM1097757v1	NZ_CP048812	Halomonas socia strain CKY01 chromosome, complete genome	5	3030682-3030789	5	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	Orphan	TGTGGGAGCGACTTCAGTCGCGATACAGCGCGCAGCGCTGC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,RT,WYL,DinG	NA|46aa|up_0|NZ_CP048812.1_3029199_3029337_-,NA	NA|488aa|up_9|NZ_CP048812.1_3017377_3018841_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|487aa|up_8|NZ_CP048812.1_3018840_3020301_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|96aa|up_7|NZ_CP048812.1_3020321_3020609_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|346aa|up_6|NZ_CP048812.1_3020801_3021839_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|302aa|up_5|NZ_CP048812.1_3021870_3022776_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|163aa|up_4|NZ_CP048812.1_3022775_3023264_+	PRK11060, PRK11060, rod shape-determining protein MreD; Provisional	NA|198aa|up_3|NZ_CP048812.1_3023283_3023877_+	PRK00032, PRK00032, septum formation inhibitor Maf	NA|488aa|up_2|NZ_CP048812.1_3023909_3025373_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|1266aa|up_1|NZ_CP048812.1_3025376_3029174_+	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|46aa|up_0|NZ_CP048812.1_3029199_3029337_-	NA	NA|90aa|down_0|NZ_CP048812.1_3032733_3033003_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|308aa|down_1|NZ_CP048812.1_3033007_3033931_-	PRK05416, PRK05416, RNase adapter RapZ	NA|140aa|down_2|NZ_CP048812.1_3033998_3034418_-	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN	NA|103aa|down_3|NZ_CP048812.1_3034492_3034801_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|471aa|down_4|NZ_CP048812.1_3034912_3036325_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|242aa|down_5|NZ_CP048812.1_3036488_3037214_-	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|170aa|down_6|NZ_CP048812.1_3037250_3037760_-	TIGR03002, outer_YhbN_LptA, lipopolysaccharide transport periplasmic protein LptA	NA|197aa|down_7|NZ_CP048812.1_3037756_3038347_-	pfam06835, LptC, Lipopolysaccharide-assembly, LptC-related	NA|186aa|down_8|NZ_CP048812.1_3038350_3038908_-	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only]	NA|327aa|down_9|NZ_CP048812.1_3038916_3039897_-	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD
