assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	1	26162-26942	1	CRT	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GCCGNNGNCGNCGTNGCCGCCGNTGCCGCCG	31	1	1	26766-26785	NZ_AP022581.1_4938808-4938827	NA	11	11	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA	NA|355aa|up_9|NZ_AP022581.1_14354_15419_-	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|300aa|up_8|NZ_AP022581.1_15434_16334_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|344aa|up_7|NZ_AP022581.1_16473_17505_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_6|NZ_AP022581.1_17564_18275_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|404aa|up_5|NZ_AP022581.1_18303_19515_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|up_4|NZ_AP022581.1_19597_20440_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_3|NZ_AP022581.1_20474_22121_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|256aa|up_2|NZ_AP022581.1_22117_22885_+	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|up_1|NZ_AP022581.1_23440_24274_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|515aa|up_0|NZ_AP022581.1_24270_25815_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|501aa|down_0|NZ_AP022581.1_30448_31951_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|362aa|down_1|NZ_AP022581.1_31947_33033_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|394aa|down_2|NZ_AP022581.1_33065_34247_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_AP022581.1_34406_34598_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|302aa|down_4|NZ_AP022581.1_34631_35537_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_AP022581.1_35677_36442_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_AP022581.1_36476_37319_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_AP022581.1_37331_38534_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_AP022581.1_38533_39586_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|374aa|down_9|NZ_AP022581.1_39575_40697_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	2	180490-180578	1	CRISPRCasFinder	no	csa3	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Type I-A	GCCCCGCCCACGTGGAGGCGGGTTCCTG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA|68aa|up_4|NZ_AP022581.1_176471_176675_-,NA	NA|223aa|up_9|NZ_AP022581.1_170142_170811_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|681aa|up_8|NZ_AP022581.1_170869_172912_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|426aa|up_7|NZ_AP022581.1_173137_174415_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_6|NZ_AP022581.1_174425_175442_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_5|NZ_AP022581.1_175591_176233_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|68aa|up_4|NZ_AP022581.1_176471_176675_-	NA	csa3|129aa|up_3|NZ_AP022581.1_176723_177110_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|171aa|up_2|NZ_AP022581.1_177170_177683_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|281aa|up_1|NZ_AP022581.1_177834_178677_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|270aa|up_0|NZ_AP022581.1_178726_179536_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|99aa|down_0|NZ_AP022581.1_180715_181012_+	pfam05534, HicB, HicB family	NA|145aa|down_1|NZ_AP022581.1_181008_181443_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|817aa|down_2|NZ_AP022581.1_183278_185729_-	pfam00934, PE, PE family	NA|474aa|down_3|NZ_AP022581.1_186141_187563_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|379aa|down_4|NZ_AP022581.1_187628_188765_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|224aa|down_5|NZ_AP022581.1_188778_189450_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|159aa|down_6|NZ_AP022581.1_189652_190129_+	cd07254, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	csa3|123aa|down_7|NZ_AP022581.1_190245_190614_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|375aa|down_8|NZ_AP022581.1_190657_191782_+	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|239aa|down_9|NZ_AP022581.1_191899_192616_+	pfam14032, PknH_C, PknH-like extracellular domain
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	3	673778-674278	2	CRT	no	RT	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Unclear	CGTNNCCGCCGTNNCCGCCGT	21	0	0	NA	NA	NA	8	8	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+,NA	NA|472aa|up_9|NZ_AP022581.1_651340_652756_+	pfam00934, PE, PE family	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+	NA	NA|313aa|up_7|NZ_AP022581.1_654305_655244_-	PRK05439, PRK05439, pantothenate kinase; Provisional	RT|458aa|up_6|NZ_AP022581.1_655827_657201_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|427aa|up_5|NZ_AP022581.1_657504_658785_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|up_4|NZ_AP022581.1_658929_659757_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|517aa|up_3|NZ_AP022581.1_659824_661375_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|300aa|up_2|NZ_AP022581.1_661836_662736_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|955aa|up_1|NZ_AP022581.1_663042_665907_+	pfam00823, PPE, PPE family	NA|2337aa|up_0|NZ_AP022581.1_665906_672917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|374aa|down_0|NZ_AP022581.1_678082_679204_+	pfam00823, PPE, PPE family	NA|99aa|down_1|NZ_AP022581.1_679264_679561_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|down_2|NZ_AP022581.1_679574_679859_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|120aa|down_3|NZ_AP022581.1_679963_680323_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|457aa|down_4|NZ_AP022581.1_680368_681739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|702aa|down_5|NZ_AP022581.1_682101_684207_+	pfam00823, PPE, PPE family	NA|1105aa|down_6|NZ_AP022581.1_684761_688076_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|1075aa|down_7|NZ_AP022581.1_688190_691415_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|382aa|down_8|NZ_AP022581.1_691378_692524_+	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|558aa|down_9|NZ_AP022581.1_692561_694235_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	4	676252-676354	2	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	CCGCCGTTGCCGCCGTTGCCGCCG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+,NA	NA|472aa|up_9|NZ_AP022581.1_651340_652756_+	pfam00934, PE, PE family	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+	NA	NA|313aa|up_7|NZ_AP022581.1_654305_655244_-	PRK05439, PRK05439, pantothenate kinase; Provisional	RT|458aa|up_6|NZ_AP022581.1_655827_657201_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|427aa|up_5|NZ_AP022581.1_657504_658785_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|up_4|NZ_AP022581.1_658929_659757_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|517aa|up_3|NZ_AP022581.1_659824_661375_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|300aa|up_2|NZ_AP022581.1_661836_662736_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|955aa|up_1|NZ_AP022581.1_663042_665907_+	pfam00823, PPE, PPE family	NA|2337aa|up_0|NZ_AP022581.1_665906_672917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|374aa|down_0|NZ_AP022581.1_678082_679204_+	pfam00823, PPE, PPE family	NA|99aa|down_1|NZ_AP022581.1_679264_679561_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|down_2|NZ_AP022581.1_679574_679859_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|120aa|down_3|NZ_AP022581.1_679963_680323_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|457aa|down_4|NZ_AP022581.1_680368_681739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|702aa|down_5|NZ_AP022581.1_682101_684207_+	pfam00823, PPE, PPE family	NA|1105aa|down_6|NZ_AP022581.1_684761_688076_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|1075aa|down_7|NZ_AP022581.1_688190_691415_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|382aa|down_8|NZ_AP022581.1_691378_692524_+	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|558aa|down_9|NZ_AP022581.1_692561_694235_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	5	676429-677169	3	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	CCGCCGTTGCCGCCGTTGCCGCCG	24	3	8	676609-676629|676609-676629|676609-676629|676609-676629|676864-676878|676981-676995|676981-676995|676981-676995	NZ_AP022581.1_4962228-4962248|NZ_AP022581.1_1950832-1950812|NZ_AP022581.1_1952021-1952001|NZ_AP022581.1_4451579-4451559|NZ_AP022581.1_1590595-1590609|NZ_AP022581.1_775272-775286|NZ_AP022581.1_1167849-1167835|NZ_AP022581.1_3971682-3971668	NA	14	14	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+,NA	NA|472aa|up_9|NZ_AP022581.1_651340_652756_+	pfam00934, PE, PE family	NA|412aa|up_8|NZ_AP022581.1_653052_654288_+	NA	NA|313aa|up_7|NZ_AP022581.1_654305_655244_-	PRK05439, PRK05439, pantothenate kinase; Provisional	RT|458aa|up_6|NZ_AP022581.1_655827_657201_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|427aa|up_5|NZ_AP022581.1_657504_658785_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|up_4|NZ_AP022581.1_658929_659757_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|517aa|up_3|NZ_AP022581.1_659824_661375_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|300aa|up_2|NZ_AP022581.1_661836_662736_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|955aa|up_1|NZ_AP022581.1_663042_665907_+	pfam00823, PPE, PPE family	NA|2337aa|up_0|NZ_AP022581.1_665906_672917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|374aa|down_0|NZ_AP022581.1_678082_679204_+	pfam00823, PPE, PPE family	NA|99aa|down_1|NZ_AP022581.1_679264_679561_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|down_2|NZ_AP022581.1_679574_679859_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|120aa|down_3|NZ_AP022581.1_679963_680323_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|457aa|down_4|NZ_AP022581.1_680368_681739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|702aa|down_5|NZ_AP022581.1_682101_684207_+	pfam00823, PPE, PPE family	NA|1105aa|down_6|NZ_AP022581.1_684761_688076_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|1075aa|down_7|NZ_AP022581.1_688190_691415_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|382aa|down_8|NZ_AP022581.1_691378_692524_+	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|558aa|down_9|NZ_AP022581.1_692561_694235_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	6	682659-682968	3	CRT	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	CAACCTGGGCAGCGGNAAC	19	1	1	682864-682904	NZ_AP022581.1_4058738-4058778	NA	5	5	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA	NA|517aa|up_9|NZ_AP022581.1_659824_661375_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|300aa|up_8|NZ_AP022581.1_661836_662736_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|955aa|up_7|NZ_AP022581.1_663042_665907_+	pfam00823, PPE, PPE family	NA|2337aa|up_6|NZ_AP022581.1_665906_672917_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|1403aa|up_5|NZ_AP022581.1_673352_677561_-	pfam00934, PE, PE family	NA|374aa|up_4|NZ_AP022581.1_678082_679204_+	pfam00823, PPE, PPE family	NA|99aa|up_3|NZ_AP022581.1_679264_679561_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|up_2|NZ_AP022581.1_679574_679859_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|120aa|up_1|NZ_AP022581.1_679963_680323_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|457aa|up_0|NZ_AP022581.1_680368_681739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|1105aa|down_0|NZ_AP022581.1_684761_688076_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|1075aa|down_1|NZ_AP022581.1_688190_691415_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|382aa|down_2|NZ_AP022581.1_691378_692524_+	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|558aa|down_3|NZ_AP022581.1_692561_694235_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|434aa|down_4|NZ_AP022581.1_694578_695880_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_5|NZ_AP022581.1_695905_696781_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|483aa|down_6|NZ_AP022581.1_696839_698288_+	cd07302, CHD, cyclase homology domain	NA|322aa|down_7|NZ_AP022581.1_698664_699630_-	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)	NA|470aa|down_8|NZ_AP022581.1_699709_701119_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|362aa|down_9|NZ_AP022581.1_701149_702235_-	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	7	764759-764868	1	PILER-CR	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	TGCCGGCGGCAACGGCG	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|80aa|down_3|NZ_AP022581.1_768472_768712_+	NA|375aa|up_9|NZ_AP022581.1_747585_748710_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|571aa|up_8|NZ_AP022581.1_749072_750785_+	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|761aa|up_7|NZ_AP022581.1_750851_753134_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|446aa|up_6|NZ_AP022581.1_753554_754892_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|431aa|up_5|NZ_AP022581.1_755139_756432_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|286aa|up_4|NZ_AP022581.1_757469_758327_+	pfam13458, Peripla_BP_6, Periplasmic binding protein	NA|169aa|up_3|NZ_AP022581.1_758319_758826_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|495aa|up_2|NZ_AP022581.1_758832_760317_+	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins	NA|405aa|up_1|NZ_AP022581.1_760328_761543_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|157aa|up_0|NZ_AP022581.1_761798_762269_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|116aa|down_0|NZ_AP022581.1_766524_766872_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|down_1|NZ_AP022581.1_766885_768106_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|69aa|down_2|NZ_AP022581.1_768210_768417_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|80aa|down_3|NZ_AP022581.1_768472_768712_+	NA	NA|143aa|down_4|NZ_AP022581.1_768715_769144_+	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897	NA|386aa|down_5|NZ_AP022581.1_769231_770389_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|263aa|down_6|NZ_AP022581.1_770385_771174_+	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|338aa|down_7|NZ_AP022581.1_771428_772442_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|170aa|down_8|NZ_AP022581.1_772518_773028_-	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|366aa|down_9|NZ_AP022581.1_773021_774119_-	COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	8	765107-766269	4	CRT	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	CGGCNNCGGCGGNGNCGGCGGNG	23	0	0	NA	NA	NA	14	14	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|80aa|down_3|NZ_AP022581.1_768472_768712_+	NA|375aa|up_9|NZ_AP022581.1_747585_748710_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|571aa|up_8|NZ_AP022581.1_749072_750785_+	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|761aa|up_7|NZ_AP022581.1_750851_753134_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|446aa|up_6|NZ_AP022581.1_753554_754892_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|431aa|up_5|NZ_AP022581.1_755139_756432_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|286aa|up_4|NZ_AP022581.1_757469_758327_+	pfam13458, Peripla_BP_6, Periplasmic binding protein	NA|169aa|up_3|NZ_AP022581.1_758319_758826_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|495aa|up_2|NZ_AP022581.1_758832_760317_+	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins	NA|405aa|up_1|NZ_AP022581.1_760328_761543_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|157aa|up_0|NZ_AP022581.1_761798_762269_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|116aa|down_0|NZ_AP022581.1_766524_766872_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|down_1|NZ_AP022581.1_766885_768106_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|69aa|down_2|NZ_AP022581.1_768210_768417_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|80aa|down_3|NZ_AP022581.1_768472_768712_+	NA	NA|143aa|down_4|NZ_AP022581.1_768715_769144_+	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897	NA|386aa|down_5|NZ_AP022581.1_769231_770389_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|263aa|down_6|NZ_AP022581.1_770385_771174_+	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|338aa|down_7|NZ_AP022581.1_771428_772442_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|170aa|down_8|NZ_AP022581.1_772518_773028_-	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|366aa|down_9|NZ_AP022581.1_773021_774119_-	COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	9	1085246-1085447	2	PILER-CR	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	ACCCCACCCATCAACACCCCACCATTCACCATCGACCCCATCGCCGTCGGCGGCTTCA	58	1	1	1085375-1085389	NZ_AP022581.1_1085230-1085244	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|208aa|down_1|NZ_AP022581.1_1091670_1092294_-,NA|205aa|down_2|NZ_AP022581.1_1092290_1092905_-	NA|401aa|up_9|NZ_AP022581.1_1073260_1074463_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|539aa|up_8|NZ_AP022581.1_1074474_1076091_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|274aa|up_7|NZ_AP022581.1_1076087_1076909_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|348aa|up_6|NZ_AP022581.1_1076921_1077965_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|393aa|up_5|NZ_AP022581.1_1077967_1079146_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|499aa|up_4|NZ_AP022581.1_1079299_1080796_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|412aa|up_3|NZ_AP022581.1_1081231_1082467_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|85aa|up_2|NZ_AP022581.1_1082820_1083075_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|143aa|up_1|NZ_AP022581.1_1083088_1083517_-	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional	NA|275aa|up_0|NZ_AP022581.1_1083578_1084403_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|409aa|down_0|NZ_AP022581.1_1090191_1091418_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|208aa|down_1|NZ_AP022581.1_1091670_1092294_-	NA	NA|205aa|down_2|NZ_AP022581.1_1092290_1092905_-	NA	NA|384aa|down_3|NZ_AP022581.1_1093012_1094164_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|427aa|down_4|NZ_AP022581.1_1094160_1095441_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|654aa|down_5|NZ_AP022581.1_1095393_1097355_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|143aa|down_6|NZ_AP022581.1_1097488_1097917_-	TIGR00377, Anti-sigma_F_factor_antagonist, anti-anti-sigma factor	NA|402aa|down_7|NZ_AP022581.1_1098071_1099277_-	pfam04909, Amidohydro_2, Amidohydrolase	NA|334aa|down_8|NZ_AP022581.1_1099355_1100357_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|485aa|down_9|NZ_AP022581.1_1100830_1102285_-	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	10	1542751-1542867	3	PILER-CR	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GGGGCCGGCGGCGCCGGCGGCA	22	1	1	1542773-1542797	NZ_AP022581.1_1544017-1544041	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|75aa|down_1|NZ_AP022581.1_1546169_1546394_+	NA|575aa|up_9|NZ_AP022581.1_1528277_1530002_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|766aa|up_8|NZ_AP022581.1_1529994_1532292_-	TIGR02401, Putative_maltooligosyl_trehalose_synthase, malto-oligosyltrehalose synthase	NA|731aa|up_7|NZ_AP022581.1_1532312_1534505_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|717aa|up_6|NZ_AP022581.1_1534544_1536695_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|253aa|up_5|NZ_AP022581.1_1536790_1537549_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|95aa|up_4|NZ_AP022581.1_1537871_1538156_-	TIGR02152, Putative_ribokinase, ribokinase	NA|442aa|up_3|NZ_AP022581.1_1538386_1539712_+	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|386aa|up_2|NZ_AP022581.1_1539716_1540874_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|227aa|up_1|NZ_AP022581.1_1540870_1541551_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|170aa|up_0|NZ_AP022581.1_1541550_1542060_+	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|350aa|down_0|NZ_AP022581.1_1545111_1546161_+	PRK06256, PRK06256, biotin synthase; Validated	NA|75aa|down_1|NZ_AP022581.1_1546169_1546394_+	NA	NA|230aa|down_2|NZ_AP022581.1_1546390_1547080_+	pfam10821, DUF2567, Protein of unknown function (DUF2567)	NA|447aa|down_3|NZ_AP022581.1_1547061_1548402_-	pfam03583, LIP, Secretory lipase	NA|241aa|down_4|NZ_AP022581.1_1548736_1549459_-	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|350aa|down_5|NZ_AP022581.1_1549507_1550557_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|532aa|down_6|NZ_AP022581.1_1550553_1552149_+	PRK07804, PRK07804, L-aspartate oxidase; Provisional	NA|286aa|down_7|NZ_AP022581.1_1552210_1553068_+	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase	NA|243aa|down_8|NZ_AP022581.1_1553082_1553811_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|141aa|down_9|NZ_AP022581.1_1555551_1555974_-	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	11	2892543-2901431	4,4,5,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Unclear	GTGCTCCCCGCAAACGCGGGGGTGATCC,GTGCTCCCCGCAAACGCGGGGGTGATCC,GTGCTCCCCGCAAACGCGGGGGTGATCC,GTGCTCCCCGCAAACGCGGGGGTGA	28,28,28,25	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B:NA	143,145,145,143	145	Unclear	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|107aa|down_2|NZ_AP022581.1_2903683_2904004_+,NA|107aa|down_8|NZ_AP022581.1_2910167_2910488_+	NA|298aa|up_9|NZ_AP022581.1_2882979_2883873_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|228aa|up_8|NZ_AP022581.1_2883869_2884553_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|325aa|up_7|NZ_AP022581.1_2884549_2885524_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|188aa|up_6|NZ_AP022581.1_2885583_2886147_-	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|194aa|up_5|NZ_AP022581.1_2886146_2886728_-	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|188aa|up_4|NZ_AP022581.1_2886861_2887425_-	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|562aa|up_3|NZ_AP022581.1_2887424_2889110_-	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|109aa|up_2|NZ_AP022581.1_2889113_2889440_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|193aa|up_1|NZ_AP022581.1_2889605_2890184_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	cas2|138aa|up_0|NZ_AP022581.1_2892052_2892466_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|72aa|down_0|NZ_AP022581.1_2902655_2902871_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|250aa|down_1|NZ_AP022581.1_2902928_2903678_+	PRK06190, PRK06190, enoyl-CoA hydratase; Provisional	NA|107aa|down_2|NZ_AP022581.1_2903683_2904004_+	NA	NA|235aa|down_3|NZ_AP022581.1_2904054_2904759_+	pfam00934, PE, PE family	NA|351aa|down_4|NZ_AP022581.1_2904703_2905756_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|182aa|down_5|NZ_AP022581.1_2907934_2908480_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|83aa|down_6|NZ_AP022581.1_2908476_2908725_-	pfam10041, DUF2277, Uncharacterized conserved protein (DUF2277)	NA|131aa|down_7|NZ_AP022581.1_2908752_2909145_-	COG3744, COG3744, PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]	NA|107aa|down_8|NZ_AP022581.1_2910167_2910488_+	NA	NA|361aa|down_9|NZ_AP022581.1_2912474_2913557_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	12	2981122-2981206	5	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GCCTTCGGCGGCCAGCTGTCCGCAGGC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA	NA|285aa|up_9|NZ_AP022581.1_2971204_2972059_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|388aa|up_8|NZ_AP022581.1_2972140_2973304_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|405aa|up_7|NZ_AP022581.1_2973314_2974529_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|436aa|up_6|NZ_AP022581.1_2974549_2975857_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|222aa|up_5|NZ_AP022581.1_2975966_2976632_+	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	NA|584aa|up_4|NZ_AP022581.1_2976759_2978511_+	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|197aa|up_3|NZ_AP022581.1_2978625_2979216_+	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	NA|85aa|up_2|NZ_AP022581.1_2979309_2979564_+	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|287aa|up_1|NZ_AP022581.1_2979589_2980450_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|170aa|up_0|NZ_AP022581.1_2980454_2980964_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|302aa|down_0|NZ_AP022581.1_2982310_2983216_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|186aa|down_1|NZ_AP022581.1_2983237_2983795_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|274aa|down_2|NZ_AP022581.1_2983863_2984685_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|247aa|down_3|NZ_AP022581.1_2984916_2985657_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|140aa|down_4|NZ_AP022581.1_2985714_2986134_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|472aa|down_5|NZ_AP022581.1_2986148_2987564_-	PRK07869, PRK07869, amidase; Provisional	NA|272aa|down_6|NZ_AP022581.1_2987575_2988391_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|275aa|down_7|NZ_AP022581.1_2988392_2989217_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|167aa|down_8|NZ_AP022581.1_2989499_2990000_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|422aa|down_9|NZ_AP022581.1_2989996_2991262_-	pfam00823, PPE, PPE family
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	13	4376237-4376398	6	PILER-CR	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GCGACGCCGACGTTGTAACTGCCCAAATTCCC	32	2	3	4376280-4376323|4376367-4376397|4376367-4376397	NZ_AP022581.1_4372464-4372507|NZ_AP022581.1_4372540-4372570|NZ_AP022581.1_4371292-4371322	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|172aa|down_4|NZ_AP022581.1_4385229_4385745_+,NA|91aa|down_9|NZ_AP022581.1_4391252_4391525_-	NA|366aa|up_9|NZ_AP022581.1_4355247_4356345_+	TIGR04465, ArgArg_F420, TAT-translocated F420-dependent dehydrogenase, FGD2 family	NA|432aa|up_8|NZ_AP022581.1_4356433_4357729_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|152aa|up_7|NZ_AP022581.1_4359433_4359889_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|171aa|up_6|NZ_AP022581.1_4359926_4360439_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|334aa|up_5|NZ_AP022581.1_4360769_4361771_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|226aa|up_4|NZ_AP022581.1_4361848_4362526_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|454aa|up_3|NZ_AP022581.1_4362605_4363967_-	COG3281, Ble, Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]	NA|602aa|up_2|NZ_AP022581.1_4363963_4365769_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|351aa|up_1|NZ_AP022581.1_4365877_4366930_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|462aa|up_0|NZ_AP022581.1_4367635_4369021_-	pfam00934, PE, PE family	NA|1101aa|down_0|NZ_AP022581.1_4378348_4381651_-	pfam00934, PE, PE family	NA|136aa|down_1|NZ_AP022581.1_4381861_4382269_+	TIGR03668, Rv0121_F420, PPOX class probable F420-dependent enzyme, Rv0121 family	NA|265aa|down_2|NZ_AP022581.1_4382252_4383047_-	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|716aa|down_3|NZ_AP022581.1_4383045_4385193_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|172aa|down_4|NZ_AP022581.1_4385229_4385745_+	NA	NA|520aa|down_5|NZ_AP022581.1_4385697_4387257_-	PRK05852, PRK05852, fatty acid--CoA ligase family protein	NA|564aa|down_6|NZ_AP022581.1_4387536_4389228_+	PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated	NA|315aa|down_7|NZ_AP022581.1_4389294_4390239_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|252aa|down_8|NZ_AP022581.1_4390403_4391159_+	cd13431, LDT_IgD_like_1, IgD-like repeat domain of mycobacterial L,D-transpeptidases	NA|91aa|down_9|NZ_AP022581.1_4391252_4391525_-	NA
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	14	4377449-4377610	7	PILER-CR	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GCGACGCCGACGTTGTAACTGCCCAAATTCCC	32	2	3	4377492-4377535|4377579-4377609|4377579-4377609	NZ_AP022581.1_4372464-4372507|NZ_AP022581.1_4372540-4372570|NZ_AP022581.1_4371292-4371322	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|172aa|down_4|NZ_AP022581.1_4385229_4385745_+,NA|91aa|down_9|NZ_AP022581.1_4391252_4391525_-	NA|366aa|up_9|NZ_AP022581.1_4355247_4356345_+	TIGR04465, ArgArg_F420, TAT-translocated F420-dependent dehydrogenase, FGD2 family	NA|432aa|up_8|NZ_AP022581.1_4356433_4357729_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|152aa|up_7|NZ_AP022581.1_4359433_4359889_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|171aa|up_6|NZ_AP022581.1_4359926_4360439_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|334aa|up_5|NZ_AP022581.1_4360769_4361771_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|226aa|up_4|NZ_AP022581.1_4361848_4362526_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|454aa|up_3|NZ_AP022581.1_4362605_4363967_-	COG3281, Ble, Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]	NA|602aa|up_2|NZ_AP022581.1_4363963_4365769_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|351aa|up_1|NZ_AP022581.1_4365877_4366930_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|462aa|up_0|NZ_AP022581.1_4367635_4369021_-	pfam00934, PE, PE family	NA|1101aa|down_0|NZ_AP022581.1_4378348_4381651_-	pfam00934, PE, PE family	NA|136aa|down_1|NZ_AP022581.1_4381861_4382269_+	TIGR03668, Rv0121_F420, PPOX class probable F420-dependent enzyme, Rv0121 family	NA|265aa|down_2|NZ_AP022581.1_4382252_4383047_-	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|716aa|down_3|NZ_AP022581.1_4383045_4385193_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|172aa|down_4|NZ_AP022581.1_4385229_4385745_+	NA	NA|520aa|down_5|NZ_AP022581.1_4385697_4387257_-	PRK05852, PRK05852, fatty acid--CoA ligase family protein	NA|564aa|down_6|NZ_AP022581.1_4387536_4389228_+	PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated	NA|315aa|down_7|NZ_AP022581.1_4389294_4390239_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|252aa|down_8|NZ_AP022581.1_4390403_4391159_+	cd13431, LDT_IgD_like_1, IgD-like repeat domain of mycobacterial L,D-transpeptidases	NA|91aa|down_9|NZ_AP022581.1_4391252_4391525_-	NA
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	15	4519995-4520083	6	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	CTCTCATCCCAGCGGACGGCGGATCTGC	28	1	1	4520023-4520055	NZ_AP022581.1_4901727-4901695	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA|48aa|up_4|NZ_AP022581.1_4517468_4517612_+,NA	NA|202aa|up_9|NZ_AP022581.1_4512955_4513561_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|444aa|up_8|NZ_AP022581.1_4513663_4514995_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|258aa|up_7|NZ_AP022581.1_4515034_4515808_+	TIGR03084, conserved_hypothetical_protein, TIGR03084 family protein	NA|110aa|up_6|NZ_AP022581.1_4515895_4516225_-	pfam10921, DUF2710, Protein of unknown function (DUF2710)	NA|376aa|up_5|NZ_AP022581.1_4516258_4517386_-	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|48aa|up_4|NZ_AP022581.1_4517468_4517612_+	NA	NA|102aa|up_3|NZ_AP022581.1_4517616_4517922_-	pfam10904, DUF2694, Protein of unknown function (DUF2694)	NA|106aa|up_2|NZ_AP022581.1_4517918_4518236_-	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|427aa|up_1|NZ_AP022581.1_4518258_4519539_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|126aa|up_0|NZ_AP022581.1_4519607_4519985_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|259aa|down_0|NZ_AP022581.1_4520906_4521683_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|139aa|down_1|NZ_AP022581.1_4521826_4522243_+	pfam02467, Whib, Transcription factor WhiB	NA|328aa|down_2|NZ_AP022581.1_4522327_4523311_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|114aa|down_3|NZ_AP022581.1_4523307_4523649_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|527aa|down_4|NZ_AP022581.1_4524032_4525613_+	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|156aa|down_5|NZ_AP022581.1_4525734_4526202_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|523aa|down_6|NZ_AP022581.1_4526290_4527859_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|470aa|down_7|NZ_AP022581.1_4527855_4529265_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|492aa|down_8|NZ_AP022581.1_4529261_4530737_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|442aa|down_9|NZ_AP022581.1_4530733_4532059_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_010731535.1_ASM1073153v1	NZ_AP022581	Mycobacterium lacus strain JCM 15657	16	5063123-5063231	7	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	Orphan	GCTAGTGCTGAATTGCCCGGCTCTCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,RT,DinG,WYL,cas4,DEDDh,cas2	NA,NA|124aa|down_0|NZ_AP022581.1_5063265_5063637_-	NA|201aa|up_9|NZ_AP022581.1_5054505_5055108_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|387aa|up_8|NZ_AP022581.1_5055176_5056337_+	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|290aa|up_7|NZ_AP022581.1_5056439_5057309_+	pfam18741, MTES_1575, REase_MTES_1575	NA|357aa|up_6|NZ_AP022581.1_5057374_5058445_-	pfam03060, NMO, Nitronate monooxygenase	NA|248aa|up_5|NZ_AP022581.1_5058441_5059185_-	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|294aa|up_4|NZ_AP022581.1_5059181_5060063_-	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|248aa|up_3|NZ_AP022581.1_5060065_5060809_-	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|251aa|up_2|NZ_AP022581.1_5060905_5061658_+	PRK07856, PRK07856, SDR family oxidoreductase	NA|305aa|up_1|NZ_AP022581.1_5061678_5062593_+	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|149aa|up_0|NZ_AP022581.1_5062666_5063113_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|124aa|down_0|NZ_AP022581.1_5063265_5063637_-	NA	NA|388aa|down_1|NZ_AP022581.1_5063636_5064800_-	PRK07850, PRK07850, steroid 3-ketoacyl-CoA thiolase	NA|419aa|down_2|NZ_AP022581.1_5064956_5066213_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|359aa|down_3|NZ_AP022581.1_5066231_5067308_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|388aa|down_4|NZ_AP022581.1_5067292_5068456_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|313aa|down_5|NZ_AP022581.1_5068452_5069391_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|130aa|down_6|NZ_AP022581.1_5069387_5069777_+	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|395aa|down_7|NZ_AP022581.1_5069776_5070961_+	PRK07855, PRK07855, lipid-transfer protein; Provisional	NA|86aa|down_8|NZ_AP022581.1_5071151_5071409_+	pfam08972, DUF1902, Domain of unknown function (DUF1902)	NA|252aa|down_9|NZ_AP022581.1_5073191_5073947_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]
