assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	1	1702883-1702971	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	CCCAGACTCGACGGCAGCGTCAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|150aa|up_8|NZ_AP022614.1_1692820_1693270_-,NA|154aa|up_2|NZ_AP022614.1_1700731_1701193_-,NA|57aa|up_0|NZ_AP022614.1_1702538_1702709_+,NA|179aa|down_2|NZ_AP022614.1_1706830_1707367_-,NA|250aa|down_3|NZ_AP022614.1_1707430_1708180_-	NA|726aa|up_9|NZ_AP022614.1_1690457_1692635_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|150aa|up_8|NZ_AP022614.1_1692820_1693270_-	NA	NA|498aa|up_7|NZ_AP022614.1_1693315_1694809_-	pfam00083, Sugar_tr, Sugar (and other) transporter	NA|599aa|up_6|NZ_AP022614.1_1694875_1696672_-	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103	NA|602aa|up_5|NZ_AP022614.1_1696668_1698474_-	TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase	NA|461aa|up_4|NZ_AP022614.1_1698683_1700066_-	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|114aa|up_3|NZ_AP022614.1_1700340_1700682_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|154aa|up_2|NZ_AP022614.1_1700731_1701193_-	NA	NA|344aa|up_1|NZ_AP022614.1_1701352_1702384_-	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion]	NA|57aa|up_0|NZ_AP022614.1_1702538_1702709_+	NA	NA|109aa|down_0|NZ_AP022614.1_1703884_1704211_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|846aa|down_1|NZ_AP022614.1_1704210_1706748_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|179aa|down_2|NZ_AP022614.1_1706830_1707367_-	NA	NA|250aa|down_3|NZ_AP022614.1_1707430_1708180_-	NA	NA|286aa|down_4|NZ_AP022614.1_1708330_1709188_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|298aa|down_5|NZ_AP022614.1_1709187_1710081_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|1860aa|down_6|NZ_AP022614.1_1710077_1715657_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|588aa|down_7|NZ_AP022614.1_1715751_1717515_-	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS	NA|441aa|down_8|NZ_AP022614.1_1717827_1719150_+	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	NA|256aa|down_9|NZ_AP022614.1_1719187_1719955_-	pfam03861, ANTAR, ANTAR domain
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	2	1900913-1900991	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	CCGGCCCCGCCGTTGCCGCCGTTACCG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|80aa|up_4|NZ_AP022614.1_1895395_1895635_-,NA	NA|528aa|up_9|NZ_AP022614.1_1889790_1891374_-	PRK07804, PRK07804, L-aspartate oxidase; Provisional	NA|353aa|up_8|NZ_AP022614.1_1891370_1892429_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|248aa|up_7|NZ_AP022614.1_1892475_1893219_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|447aa|up_6|NZ_AP022614.1_1893398_1894739_+	pfam03583, LIP, Secretory lipase	NA|217aa|up_5|NZ_AP022614.1_1894748_1895399_-	pfam10821, DUF2567, Protein of unknown function (DUF2567)	NA|80aa|up_4|NZ_AP022614.1_1895395_1895635_-	NA	NA|346aa|up_3|NZ_AP022614.1_1895654_1896692_-	PRK06256, PRK06256, biotin synthase; Validated	NA|169aa|up_2|NZ_AP022614.1_1896826_1897333_-	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|227aa|up_1|NZ_AP022614.1_1897332_1898013_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|383aa|up_0|NZ_AP022614.1_1898009_1899158_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|2092aa|down_0|NZ_AP022614.1_1902649_1908925_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|down_1|NZ_AP022614.1_1908980_1909637_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|4187aa|down_2|NZ_AP022614.1_1909645_1922206_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|1519aa|down_3|NZ_AP022614.1_1922192_1926749_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|77aa|down_4|NZ_AP022614.1_1926754_1926985_-	pfam03621, MbtH, MbtH-like protein	NA|377aa|down_5|NZ_AP022614.1_1927448_1928579_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|3674aa|down_6|NZ_AP022614.1_1928589_1939611_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|423aa|down_7|NZ_AP022614.1_1940016_1941285_-	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|241aa|down_8|NZ_AP022614.1_1941741_1942464_+	COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms]	NA|245aa|down_9|NZ_AP022614.1_1942497_1943232_-	pfam13578, Methyltransf_24, Methyltransferase domain
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	3	1901414-1901611	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	CCGGCCCCGCCGTTGCCGCCGTTACCG	27	1	16	1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458|1901441-1901458	NZ_AP022614.1_1788625-1788608|NZ_AP022614.1_4129091-4129108|NZ_AP022614.1_108382-108365|NZ_AP022614.1_1775726-1775743|NZ_AP022614.1_1776257-1776240|NZ_AP022614.1_1777403-1777386|NZ_AP022614.1_1785169-1785152|NZ_AP022614.1_1787959-1787942|NZ_AP022614.1_1788142-1788125|NZ_AP022614.1_1788472-1788455|NZ_AP022614.1_2257912-2257895|NZ_AP022614.1_4613292-4613309|NZ_AP022614.1_4614365-4614382|NZ_AP022614.1_4615439-4615456|NZ_AP022614.1_4616102-4616119|NZ_AP022614.1_4781009-4781026	NA	3	3	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|80aa|up_4|NZ_AP022614.1_1895395_1895635_-,NA	NA|528aa|up_9|NZ_AP022614.1_1889790_1891374_-	PRK07804, PRK07804, L-aspartate oxidase; Provisional	NA|353aa|up_8|NZ_AP022614.1_1891370_1892429_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|248aa|up_7|NZ_AP022614.1_1892475_1893219_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|447aa|up_6|NZ_AP022614.1_1893398_1894739_+	pfam03583, LIP, Secretory lipase	NA|217aa|up_5|NZ_AP022614.1_1894748_1895399_-	pfam10821, DUF2567, Protein of unknown function (DUF2567)	NA|80aa|up_4|NZ_AP022614.1_1895395_1895635_-	NA	NA|346aa|up_3|NZ_AP022614.1_1895654_1896692_-	PRK06256, PRK06256, biotin synthase; Validated	NA|169aa|up_2|NZ_AP022614.1_1896826_1897333_-	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|227aa|up_1|NZ_AP022614.1_1897332_1898013_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|383aa|up_0|NZ_AP022614.1_1898009_1899158_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|2092aa|down_0|NZ_AP022614.1_1902649_1908925_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|down_1|NZ_AP022614.1_1908980_1909637_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|4187aa|down_2|NZ_AP022614.1_1909645_1922206_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|1519aa|down_3|NZ_AP022614.1_1922192_1926749_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|77aa|down_4|NZ_AP022614.1_1926754_1926985_-	pfam03621, MbtH, MbtH-like protein	NA|377aa|down_5|NZ_AP022614.1_1927448_1928579_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|3674aa|down_6|NZ_AP022614.1_1928589_1939611_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|423aa|down_7|NZ_AP022614.1_1940016_1941285_-	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|241aa|down_8|NZ_AP022614.1_1941741_1942464_+	COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms]	NA|245aa|down_9|NZ_AP022614.1_1942497_1943232_-	pfam13578, Methyltransf_24, Methyltransferase domain
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	4	2419527-2419610	4	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	CTAGCCCGGCGACGATGCGCGCCGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA,NA|109aa|down_7|NZ_AP022614.1_2425380_2425707_+	NA|109aa|up_9|NZ_AP022614.1_2409618_2409945_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|200aa|up_8|NZ_AP022614.1_2410037_2410637_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|178aa|up_7|NZ_AP022614.1_2410675_2411209_+	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|862aa|up_6|NZ_AP022614.1_2411279_2413865_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|105aa|up_5|NZ_AP022614.1_2414024_2414339_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|274aa|up_4|NZ_AP022614.1_2414335_2415157_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|291aa|up_3|NZ_AP022614.1_2415159_2416032_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|559aa|up_2|NZ_AP022614.1_2416052_2417729_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|301aa|up_1|NZ_AP022614.1_2417748_2418651_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|251aa|up_0|NZ_AP022614.1_2418763_2419516_-	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|438aa|down_0|NZ_AP022614.1_2419636_2420950_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|down_1|NZ_AP022614.1_2420888_2421572_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|165aa|down_2|NZ_AP022614.1_2421662_2422157_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|down_3|NZ_AP022614.1_2422153_2422954_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|247aa|down_4|NZ_AP022614.1_2422997_2423738_+	pfam01738, DLH, Dienelactone hydrolase family	NA|149aa|down_5|NZ_AP022614.1_2424036_2424483_+	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|260aa|down_6|NZ_AP022614.1_2424510_2425290_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|109aa|down_7|NZ_AP022614.1_2425380_2425707_+	NA	NA|1081aa|down_8|NZ_AP022614.1_2425697_2428940_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|508aa|down_9|NZ_AP022614.1_2428936_2430460_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	5	3519924-3520001	5	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	GTCATCGGCGCCACTCCTTCTCATC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|34aa|up_7|NZ_AP022614.1_3512747_3512849_-,NA|262aa|up_0|NZ_AP022614.1_3518377_3519163_+,NA	NA|359aa|up_9|NZ_AP022614.1_3510478_3511555_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|376aa|up_8|NZ_AP022614.1_3511560_3512688_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|34aa|up_7|NZ_AP022614.1_3512747_3512849_-	NA	NA|86aa|up_6|NZ_AP022614.1_3513035_3513293_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|296aa|up_5|NZ_AP022614.1_3513433_3514321_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|278aa|up_4|NZ_AP022614.1_3514333_3515167_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|281aa|up_3|NZ_AP022614.1_3515182_3516025_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|343aa|up_2|NZ_AP022614.1_3516052_3517081_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|339aa|up_1|NZ_AP022614.1_3517077_3518094_-	pfam02541, Ppx-GppA, Ppx/GppA phosphatase family	NA|262aa|up_0|NZ_AP022614.1_3518377_3519163_+	NA	NA|407aa|down_0|NZ_AP022614.1_3520036_3521257_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|250aa|down_1|NZ_AP022614.1_3521408_3522158_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|172aa|down_2|NZ_AP022614.1_3522179_3522695_-	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|425aa|down_3|NZ_AP022614.1_3522691_3523966_-	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|438aa|down_4|NZ_AP022614.1_3524026_3525340_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|250aa|down_5|NZ_AP022614.1_3525512_3526262_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|449aa|down_6|NZ_AP022614.1_3526245_3527592_-	pfam17964, Big_10, Bacterial Ig domain	NA|372aa|down_7|NZ_AP022614.1_3527663_3528779_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|170aa|down_8|NZ_AP022614.1_3528805_3529315_+	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|277aa|down_9|NZ_AP022614.1_3529337_3530168_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	6	4402981-4403058	6	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	ATGACCCGTGCCGGCGACGATGCAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|111aa|up_8|NZ_AP022614.1_4392002_4392335_-,NA|622aa|down_3|NZ_AP022614.1_4406576_4408442_+	NA|519aa|up_9|NZ_AP022614.1_4390449_4392006_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|111aa|up_8|NZ_AP022614.1_4392002_4392335_-	NA	NA|517aa|up_7|NZ_AP022614.1_4392331_4393882_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|256aa|up_6|NZ_AP022614.1_4394026_4394794_+	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]	NA|248aa|up_5|NZ_AP022614.1_4394801_4395545_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|262aa|up_4|NZ_AP022614.1_4395559_4396345_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|276aa|up_3|NZ_AP022614.1_4396340_4397168_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|501aa|up_2|NZ_AP022614.1_4397171_4398674_-	pfam00934, PE, PE family	NA|543aa|up_1|NZ_AP022614.1_4398764_4400393_-	COG5479, COG5479, Uncharacterized protein potentially involved in peptidoglycan biosynthesis [Cell envelope biogenesis, outer membrane]	NA|311aa|up_0|NZ_AP022614.1_4400554_4401487_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|637aa|down_0|NZ_AP022614.1_4403110_4405021_+	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal	NA|185aa|down_1|NZ_AP022614.1_4405013_4405568_+	cd03395, PAP2_like_4, PAP2_like_4 proteins	NA|303aa|down_2|NZ_AP022614.1_4405564_4406473_+	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase	NA|622aa|down_3|NZ_AP022614.1_4406576_4408442_+	NA	NA|344aa|down_4|NZ_AP022614.1_4408806_4409838_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|306aa|down_5|NZ_AP022614.1_4409996_4410914_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|337aa|down_6|NZ_AP022614.1_4411045_4412056_+	pfam01083, Cutinase, Cutinase	NA|631aa|down_7|NZ_AP022614.1_4412310_4414203_+	PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	NA|1768aa|down_8|NZ_AP022614.1_4414289_4419593_+	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations	NA|525aa|down_9|NZ_AP022614.1_4419592_4421167_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	7	4611534-4612295	1	CRT	no	cas3	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Unclear	GCCCCGCCGNCNCCGCCG	18	1	3	4612041-4612058|4612041-4612058|4612041-4612058	NZ_AP022614.1_358560-358543|NZ_AP022614.1_1805500-1805517|NZ_AP022614.1_5502459-5502476	NA	13	13	Unclear	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|253aa|up_8|NZ_AP022614.1_4603034_4603793_+,NA|90aa|up_2|NZ_AP022614.1_4609435_4609705_+,NA|197aa|down_3|NZ_AP022614.1_4619726_4620317_+,NA|610aa|down_7|NZ_AP022614.1_4628061_4629891_-	NA|535aa|up_9|NZ_AP022614.1_4601418_4603023_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|253aa|up_8|NZ_AP022614.1_4603034_4603793_+	NA	NA|286aa|up_7|NZ_AP022614.1_4604178_4605036_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|392aa|up_6|NZ_AP022614.1_4606573_4607749_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|268aa|up_5|NZ_AP022614.1_4607745_4608549_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|194aa|up_4|NZ_AP022614.1_4608560_4609142_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|67aa|up_3|NZ_AP022614.1_4609178_4609379_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|90aa|up_2|NZ_AP022614.1_4609435_4609705_+	NA	NA|147aa|up_1|NZ_AP022614.1_4609592_4610033_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|344aa|up_0|NZ_AP022614.1_4610033_4611065_-	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|843aa|down_0|NZ_AP022614.1_4614093_4616622_-	pfam00934, PE, PE family	cas3|778aa|down_1|NZ_AP022614.1_4616811_4619145_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|68aa|down_2|NZ_AP022614.1_4619393_4619597_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|197aa|down_3|NZ_AP022614.1_4619726_4620317_+	NA	NA|945aa|down_4|NZ_AP022614.1_4620512_4623347_+	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|525aa|down_5|NZ_AP022614.1_4623360_4624935_-	cd07302, CHD, cyclase homology domain	NA|406aa|down_6|NZ_AP022614.1_4625144_4626362_+	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|610aa|down_7|NZ_AP022614.1_4628061_4629891_-	NA	NA|313aa|down_8|NZ_AP022614.1_4629856_4630795_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|123aa|down_9|NZ_AP022614.1_4630806_4631175_-	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304)
GCF_010730575.1_ASM1073057v1	NZ_AP022614	Mycobacterium parmense strain JCM 14742	8	4937496-4937578	7	CRISPRCasFinder	no		csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	Orphan	GATGGCGGCGACCCGCTTCGCCCGGCT	27	1	1	4937523-4937551	NZ_AP022614.1_2977243-2977271	NA	1	1	Orphan	csa3,DinG,DEDDh,PD-DExK,WYL,cas4,cas3,RT	NA|207aa|up_5|NZ_AP022614.1_4929510_4930131_-,NA|157aa|down_5|NZ_AP022614.1_4942698_4943169_-	NA|206aa|up_9|NZ_AP022614.1_4925392_4926010_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|245aa|up_8|NZ_AP022614.1_4926011_4926746_-	COG4328, COG4328, Predicted nuclease (RNAse H fold) [General function prediction only]	NA|473aa|up_7|NZ_AP022614.1_4926839_4928258_+	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2	NA|420aa|up_6|NZ_AP022614.1_4928254_4929514_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|207aa|up_5|NZ_AP022614.1_4929510_4930131_-	NA	NA|302aa|up_4|NZ_AP022614.1_4930183_4931089_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|711aa|up_3|NZ_AP022614.1_4931085_4933218_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|530aa|up_2|NZ_AP022614.1_4933272_4934862_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|235aa|up_1|NZ_AP022614.1_4935062_4935767_+	COG3233, COG3233, Predicted deacetylase [General function prediction only]	NA|556aa|up_0|NZ_AP022614.1_4935803_4937471_+	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|80aa|down_0|NZ_AP022614.1_4938326_4938566_+	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed	NA|225aa|down_1|NZ_AP022614.1_4938562_4939237_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|457aa|down_2|NZ_AP022614.1_4939233_4940604_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|272aa|down_3|NZ_AP022614.1_4940645_4941461_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|360aa|down_4|NZ_AP022614.1_4941611_4942691_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|157aa|down_5|NZ_AP022614.1_4942698_4943169_-	NA	NA|70aa|down_6|NZ_AP022614.1_4943381_4943591_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|152aa|down_7|NZ_AP022614.1_4943653_4944109_-	cd02210, cupin_BLR2406-like, Bradyrhizobium japonicum BLR2406 and related proteins, cupin domain	NA|229aa|down_8|NZ_AP022614.1_4944854_4945541_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|288aa|down_9|NZ_AP022614.1_4945638_4946502_-	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)
