assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010729895.1_ASM1072989v1	NZ_AP022612	Mycolicibacterium confluentis strain JCM 13671	1	882414-882568	1	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,cas4,WYL	Orphan	GGCGGGCATACCGGGCAGGGCGGCGGGCA	29	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DinG,DEDDh,cas4,WYL	NA|110aa|up_5|NZ_AP022612.1_877646_877976_-,NA|88aa|down_9|NZ_AP022612.1_893742_894006_-	NA|427aa|up_9|NZ_AP022612.1_872491_873772_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|548aa|up_8|NZ_AP022612.1_873824_875468_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|114aa|up_7|NZ_AP022612.1_875464_875806_-	pfam04341, DUF485, Protein of unknown function, DUF485	NA|565aa|up_6|NZ_AP022612.1_875955_877650_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|110aa|up_5|NZ_AP022612.1_877646_877976_-	NA	NA|256aa|up_4|NZ_AP022612.1_878059_878827_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|395aa|up_3|NZ_AP022612.1_878823_880008_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|101aa|up_2|NZ_AP022612.1_880068_880371_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|196aa|up_1|NZ_AP022612.1_880495_881083_+	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|327aa|up_0|NZ_AP022612.1_881175_882156_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|409aa|down_0|NZ_AP022612.1_882978_884205_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|98aa|down_1|NZ_AP022612.1_884158_884452_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|276aa|down_2|NZ_AP022612.1_884528_885356_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|130aa|down_3|NZ_AP022612.1_885358_885748_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|405aa|down_4|NZ_AP022612.1_885817_887032_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|1225aa|down_5|NZ_AP022612.1_887028_890703_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|550aa|down_6|NZ_AP022612.1_890702_892352_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|218aa|down_7|NZ_AP022612.1_892348_893002_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|244aa|down_8|NZ_AP022612.1_892998_893730_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|88aa|down_9|NZ_AP022612.1_893742_894006_-	NA
GCF_010729895.1_ASM1072989v1	NZ_AP022612	Mycolicibacterium confluentis strain JCM 13671	2	1545477-1546120	1	CRT	no		cas3,csa3,DinG,DEDDh,cas4,WYL	Orphan	GGTGGTNNNGGNGGTGNNGG	20	8	8	1545569-1545593|1545614-1545647|1545764-1545788|1545809-1545842|1545863-1545887|1545908-1545950|1545971-1546019|1546040-1546100	NZ_AP022612.1_1547888-1547912|NZ_AP022612.1_1547933-1547966|NZ_AP022612.1_1548083-1548107|NZ_AP022612.1_1548128-1548161|NZ_AP022612.1_1548182-1548206|NZ_AP022612.1_1548227-1548269|NZ_AP022612.1_1548290-1548338|NZ_AP022612.1_1548359-1548419	NA	11	11	Orphan	cas3,csa3,DinG,DEDDh,cas4,WYL	NA|69aa|up_6|NZ_AP022612.1_1535431_1535638_+,NA	NA|268aa|up_9|NZ_AP022612.1_1530678_1531482_+	pfam09037, Sulphotransf, Stf0 sulphotransferase	NA|661aa|up_8|NZ_AP022612.1_1532146_1534129_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|390aa|up_7|NZ_AP022612.1_1534166_1535336_-	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|69aa|up_6|NZ_AP022612.1_1535431_1535638_+	NA	NA|337aa|up_5|NZ_AP022612.1_1535990_1537001_+	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|295aa|up_4|NZ_AP022612.1_1536997_1537882_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|271aa|up_3|NZ_AP022612.1_1537878_1538691_+	TIGR02140, Sulfate_transport_system_permease_protein_CysW, sulfate ABC transporter, permease protein CysW	NA|353aa|up_2|NZ_AP022612.1_1538716_1539775_+	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein	NA|1022aa|up_1|NZ_AP022612.1_1541966_1545032_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|111aa|up_0|NZ_AP022612.1_1545135_1545468_+	PRK10811, rne, ribonuclease E; Reviewed	NA|1768aa|down_0|NZ_AP022612.1_1547855_1553159_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|141aa|down_1|NZ_AP022612.1_1553252_1553675_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|241aa|down_2|NZ_AP022612.1_1553678_1554401_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|247aa|down_3|NZ_AP022612.1_1554379_1555120_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|564aa|down_4|NZ_AP022612.1_1555116_1556808_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|393aa|down_5|NZ_AP022612.1_1557118_1558297_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|1721aa|down_6|NZ_AP022612.1_1558303_1563466_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|558aa|down_7|NZ_AP022612.1_1563542_1565216_-	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1164aa|down_8|NZ_AP022612.1_1565320_1568812_+	cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes	NA|245aa|down_9|NZ_AP022612.1_1568808_1569543_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_010729895.1_ASM1072989v1	NZ_AP022612	Mycolicibacterium confluentis strain JCM 13671	3	1547941-1548086	1	PILER-CR	no		cas3,csa3,DinG,DEDDh,cas4,WYL	Orphan	GTGCTGCGGGTGGCTTCGGTGGTGCTGGTGGTGCCGGTGGT	41	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DinG,DEDDh,cas4,WYL	NA|69aa|up_6|NZ_AP022612.1_1535431_1535638_+,NA	NA|268aa|up_9|NZ_AP022612.1_1530678_1531482_+	pfam09037, Sulphotransf, Stf0 sulphotransferase	NA|661aa|up_8|NZ_AP022612.1_1532146_1534129_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|390aa|up_7|NZ_AP022612.1_1534166_1535336_-	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|69aa|up_6|NZ_AP022612.1_1535431_1535638_+	NA	NA|337aa|up_5|NZ_AP022612.1_1535990_1537001_+	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|295aa|up_4|NZ_AP022612.1_1536997_1537882_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|271aa|up_3|NZ_AP022612.1_1537878_1538691_+	TIGR02140, Sulfate_transport_system_permease_protein_CysW, sulfate ABC transporter, permease protein CysW	NA|353aa|up_2|NZ_AP022612.1_1538716_1539775_+	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein	NA|1022aa|up_1|NZ_AP022612.1_1541966_1545032_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|111aa|up_0|NZ_AP022612.1_1545135_1545468_+	PRK10811, rne, ribonuclease E; Reviewed	NA|141aa|down_0|NZ_AP022612.1_1553252_1553675_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|241aa|down_1|NZ_AP022612.1_1553678_1554401_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|247aa|down_2|NZ_AP022612.1_1554379_1555120_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|564aa|down_3|NZ_AP022612.1_1555116_1556808_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|393aa|down_4|NZ_AP022612.1_1557118_1558297_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|1721aa|down_5|NZ_AP022612.1_1558303_1563466_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|558aa|down_6|NZ_AP022612.1_1563542_1565216_-	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1164aa|down_7|NZ_AP022612.1_1565320_1568812_+	cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes	NA|245aa|down_8|NZ_AP022612.1_1568808_1569543_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1357aa|down_9|NZ_AP022612.1_1569667_1573738_+	smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes
GCF_010729895.1_ASM1072989v1	NZ_AP022612	Mycolicibacterium confluentis strain JCM 13671	4	5018059-5018144	2	CRISPRCasFinder	no	csa3	cas3,csa3,DinG,DEDDh,cas4,WYL	Type I-A	TTCTTCAGCTGCCCGGGCGGGAT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,cas4,WYL	NA|299aa|up_6|NZ_AP022612.1_5012485_5013382_-,NA|103aa|up_2|NZ_AP022612.1_5016351_5016660_+,NA|75aa|up_1|NZ_AP022612.1_5016769_5016994_+,NA	NA|670aa|up_9|NZ_AP022612.1_5005635_5007645_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|267aa|up_8|NZ_AP022612.1_5007734_5008535_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|1298aa|up_7|NZ_AP022612.1_5008546_5012440_-	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|299aa|up_6|NZ_AP022612.1_5012485_5013382_-	NA	NA|338aa|up_5|NZ_AP022612.1_5013557_5014571_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|191aa|up_4|NZ_AP022612.1_5014594_5015167_+	pfam04234, CopC, CopC domain	NA|313aa|up_3|NZ_AP022612.1_5015191_5016130_+	pfam05661, DUF808, Protein of unknown function (DUF808)	NA|103aa|up_2|NZ_AP022612.1_5016351_5016660_+	NA	NA|75aa|up_1|NZ_AP022612.1_5016769_5016994_+	NA	NA|266aa|up_0|NZ_AP022612.1_5017006_5017804_-	pfam01083, Cutinase, Cutinase	NA|239aa|down_0|NZ_AP022612.1_5018829_5019546_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|282aa|down_1|NZ_AP022612.1_5019583_5020429_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|374aa|down_2|NZ_AP022612.1_5020385_5021507_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|538aa|down_3|NZ_AP022612.1_5021656_5023270_+	PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed	NA|133aa|down_4|NZ_AP022612.1_5023335_5023734_+	pfam14832, Tautomerase_3, Putative oxalocrotonate tautomerase enzyme	NA|426aa|down_5|NZ_AP022612.1_5023754_5025032_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|214aa|down_6|NZ_AP022612.1_5025025_5025667_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|164aa|down_7|NZ_AP022612.1_5025918_5026410_+	pfam13577, SnoaL_4, SnoaL-like domain	csa3|98aa|down_8|NZ_AP022612.1_5026826_5027120_-	pfam12840, HTH_20, Helix-turn-helix domain	NA|235aa|down_9|NZ_AP022612.1_5027270_5027975_+	pfam01083, Cutinase, Cutinase
