assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010729665.1_ASM1072966v1	NZ_AP022610	Mycolicibacterium madagascariense strain JCM 13574	1	200870-200971	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,cas4,DinG,casR	Orphan	GGAGCCGTCACGATTCGTGACGGT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,cas4,DinG,casR	NA|559aa|up_0|NZ_AP022610.1_198922_200599_+,NA|100aa|down_0|NZ_AP022610.1_203059_203359_+,NA|78aa|down_2|NZ_AP022610.1_204681_204915_-,NA|81aa|down_4|NZ_AP022610.1_206148_206391_-,NA|79aa|down_5|NZ_AP022610.1_206758_206995_+	NA|175aa|up_9|NZ_AP022610.1_191236_191761_-	PRK06547, PRK06547, hypothetical protein; Provisional	NA|208aa|up_8|NZ_AP022610.1_191826_192450_-	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|221aa|up_7|NZ_AP022610.1_192524_193187_-	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|391aa|up_6|NZ_AP022610.1_193220_194393_-	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]	NA|337aa|up_5|NZ_AP022610.1_194518_195529_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|489aa|up_4|NZ_AP022610.1_195549_197016_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|229aa|up_3|NZ_AP022610.1_197347_198034_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|47aa|up_2|NZ_AP022610.1_198062_198203_-	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|162aa|up_1|NZ_AP022610.1_198385_198871_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|559aa|up_0|NZ_AP022610.1_198922_200599_+	NA	NA|100aa|down_0|NZ_AP022610.1_203059_203359_+	NA	NA|393aa|down_1|NZ_AP022610.1_203476_204655_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|78aa|down_2|NZ_AP022610.1_204681_204915_-	NA	NA|246aa|down_3|NZ_AP022610.1_205272_206010_+	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|81aa|down_4|NZ_AP022610.1_206148_206391_-	NA	NA|79aa|down_5|NZ_AP022610.1_206758_206995_+	NA	NA|258aa|down_6|NZ_AP022610.1_207215_207989_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|496aa|down_7|NZ_AP022610.1_208042_209530_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|57aa|down_8|NZ_AP022610.1_210271_210442_-	pfam05532, CsbD, CsbD-like	NA|66aa|down_9|NZ_AP022610.1_211228_211426_+	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional
GCF_010729665.1_ASM1072966v1	NZ_AP022610	Mycolicibacterium madagascariense strain JCM 13574	2	3606079-3606234	1	CRT	no		WYL,csa3,cas3,DEDDh,cas4,DinG,casR	Orphan	GCGGGCGGCGCGGCGGCG	18	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,cas4,DinG,casR	NA,NA|215aa|down_4|NZ_AP022610.1_3610334_3610979_+	NA|261aa|up_9|NZ_AP022610.1_3592691_3593474_-	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|381aa|up_8|NZ_AP022610.1_3593433_3594576_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|304aa|up_7|NZ_AP022610.1_3594721_3595633_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|486aa|up_6|NZ_AP022610.1_3595629_3597087_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|372aa|up_5|NZ_AP022610.1_3597083_3598199_-	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	NA|531aa|up_4|NZ_AP022610.1_3598201_3599794_-	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|360aa|up_3|NZ_AP022610.1_3600031_3601111_-	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|502aa|up_2|NZ_AP022610.1_3601107_3602613_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|505aa|up_1|NZ_AP022610.1_3602609_3604124_-	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|624aa|up_0|NZ_AP022610.1_3604167_3606039_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|394aa|down_0|NZ_AP022610.1_3607132_3608314_-	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|144aa|down_1|NZ_AP022610.1_3608288_3608720_-	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|134aa|down_2|NZ_AP022610.1_3609050_3609452_-	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|199aa|down_3|NZ_AP022610.1_3609681_3610278_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|215aa|down_4|NZ_AP022610.1_3610334_3610979_+	NA	NA|363aa|down_5|NZ_AP022610.1_3611067_3612156_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|510aa|down_6|NZ_AP022610.1_3612170_3613700_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|134aa|down_7|NZ_AP022610.1_3613693_3614095_-	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|374aa|down_8|NZ_AP022610.1_3614187_3615309_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|466aa|down_9|NZ_AP022610.1_3615312_3616710_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family
GCF_010729665.1_ASM1072966v1	NZ_AP022610	Mycolicibacterium madagascariense strain JCM 13574	3	4270254-4270527	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,cas4,DinG,casR	Orphan	GCCGCCGCCGTTGTTGTTGGCGTTGCCG	28	1	3	4270483-4270499|4270483-4270499|4270483-4270499	NZ_AP022610.1_3026798-3026814|NZ_AP022610.1_3523241-3523257|NZ_AP022610.1_5487323-5487307	NA	4	4	Orphan	WYL,csa3,cas3,DEDDh,cas4,DinG,casR	NA,NA|144aa|down_5|NZ_AP022610.1_4278804_4279236_+,NA|282aa|down_6|NZ_AP022610.1_4279239_4280085_-,NA|49aa|down_8|NZ_AP022610.1_4281793_4281940_+,NA|324aa|down_9|NZ_AP022610.1_4282344_4283316_+	NA|82aa|up_9|NZ_AP022610.1_4260494_4260740_-	PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated	NA|276aa|up_8|NZ_AP022610.1_4260800_4261628_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|155aa|up_7|NZ_AP022610.1_4261620_4262085_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|391aa|up_6|NZ_AP022610.1_4262352_4263525_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|218aa|up_5|NZ_AP022610.1_4263600_4264254_-	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family	NA|295aa|up_4|NZ_AP022610.1_4264250_4265135_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|361aa|up_3|NZ_AP022610.1_4265131_4266214_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|78aa|up_2|NZ_AP022610.1_4266304_4266538_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|530aa|up_1|NZ_AP022610.1_4266678_4268268_-	PRK13388, PRK13388, acyl-CoA synthetase; Provisional	NA|207aa|up_0|NZ_AP022610.1_4268394_4269015_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|324aa|down_0|NZ_AP022610.1_4271507_4272479_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|361aa|down_1|NZ_AP022610.1_4272494_4273577_-	PRK07409, PRK07409, threonine synthase; Validated	NA|442aa|down_2|NZ_AP022610.1_4273573_4274899_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|474aa|down_3|NZ_AP022610.1_4274898_4276320_-	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|551aa|down_4|NZ_AP022610.1_4276316_4277969_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|144aa|down_5|NZ_AP022610.1_4278804_4279236_+	NA	NA|282aa|down_6|NZ_AP022610.1_4279239_4280085_-	NA	NA|329aa|down_7|NZ_AP022610.1_4280084_4281071_-	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|49aa|down_8|NZ_AP022610.1_4281793_4281940_+	NA	NA|324aa|down_9|NZ_AP022610.1_4282344_4283316_+	NA
GCF_010729665.1_ASM1072966v1	NZ_AP022610	Mycolicibacterium madagascariense strain JCM 13574	4	4489238-4489356	3	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,cas4,DinG,casR	Orphan	CAGGCATACATGCCTCTGCCCACCTCTGAGCGAAT	35	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,cas4,DinG,casR	NA,NA|86aa|down_1|NZ_AP022610.1_4490364_4490622_+,NA|114aa|down_2|NZ_AP022610.1_4490679_4491021_+,NA|159aa|down_3|NZ_AP022610.1_4491106_4491583_+,NA|102aa|down_4|NZ_AP022610.1_4491556_4491862_-,NA|190aa|down_9|NZ_AP022610.1_4496243_4496813_+	NA|267aa|up_9|NZ_AP022610.1_4477035_4477836_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|577aa|up_8|NZ_AP022610.1_4477825_4479556_-	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|172aa|up_7|NZ_AP022610.1_4479664_4480180_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|422aa|up_6|NZ_AP022610.1_4480212_4481478_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|268aa|up_5|NZ_AP022610.1_4481502_4482306_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|303aa|up_4|NZ_AP022610.1_4482302_4483211_-	PRK05855, PRK05855, SDR family oxidoreductase	NA|286aa|up_3|NZ_AP022610.1_4483310_4484168_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|967aa|up_2|NZ_AP022610.1_4484170_4487071_+	PRK06149, PRK06149, aminotransferase	NA|210aa|up_1|NZ_AP022610.1_4487028_4487658_-	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|477aa|up_0|NZ_AP022610.1_4487747_4489178_+	pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin	NA|253aa|down_0|NZ_AP022610.1_4489557_4490316_+	cd07302, CHD, cyclase homology domain	NA|86aa|down_1|NZ_AP022610.1_4490364_4490622_+	NA	NA|114aa|down_2|NZ_AP022610.1_4490679_4491021_+	NA	NA|159aa|down_3|NZ_AP022610.1_4491106_4491583_+	NA	NA|102aa|down_4|NZ_AP022610.1_4491556_4491862_-	NA	NA|233aa|down_5|NZ_AP022610.1_4491920_4492619_-	cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs	NA|358aa|down_6|NZ_AP022610.1_4492744_4493818_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|416aa|down_7|NZ_AP022610.1_4493913_4495161_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|335aa|down_8|NZ_AP022610.1_4495161_4496166_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|190aa|down_9|NZ_AP022610.1_4496243_4496813_+	NA
GCF_010729665.1_ASM1072966v1	NZ_AP022610	Mycolicibacterium madagascariense strain JCM 13574	5	4686819-4686907	4	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,cas4,DinG,casR	Orphan	CCCGATCTCCCGGAACCGGGCGACAC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,cas4,DinG,casR	NA|30aa|up_5|NZ_AP022610.1_4681484_4681574_-,NA|28aa|up_4|NZ_AP022610.1_4681570_4681654_-,NA|213aa|up_3|NZ_AP022610.1_4683385_4684024_+,NA|140aa|up_1|NZ_AP022610.1_4685231_4685651_+,NA|164aa|down_3|NZ_AP022610.1_4690686_4691178_-,NA|126aa|down_5|NZ_AP022610.1_4692054_4692432_-	NA|842aa|up_9|NZ_AP022610.1_4674214_4676740_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|303aa|up_8|NZ_AP022610.1_4676748_4677657_-	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|718aa|up_7|NZ_AP022610.1_4677659_4679813_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|557aa|up_6|NZ_AP022610.1_4679814_4681485_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|30aa|up_5|NZ_AP022610.1_4681484_4681574_-	NA	NA|28aa|up_4|NZ_AP022610.1_4681570_4681654_-	NA	NA|213aa|up_3|NZ_AP022610.1_4683385_4684024_+	NA	NA|289aa|up_2|NZ_AP022610.1_4684178_4685045_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|140aa|up_1|NZ_AP022610.1_4685231_4685651_+	NA	NA|272aa|up_0|NZ_AP022610.1_4685659_4686475_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|226aa|down_0|NZ_AP022610.1_4687051_4687729_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|466aa|down_1|NZ_AP022610.1_4687732_4689130_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|412aa|down_2|NZ_AP022610.1_4689412_4690648_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|164aa|down_3|NZ_AP022610.1_4690686_4691178_-	NA	NA|238aa|down_4|NZ_AP022610.1_4691212_4691926_-	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|126aa|down_5|NZ_AP022610.1_4692054_4692432_-	NA	NA|717aa|down_6|NZ_AP022610.1_4692474_4694625_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|306aa|down_7|NZ_AP022610.1_4694640_4695558_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|342aa|down_8|NZ_AP022610.1_4695698_4696724_+	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|165aa|down_9|NZ_AP022610.1_4697897_4698392_+	pfam13826, DUF4188, Domain of unknown function (DUF4188)
