assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010442835.1_ASM1044283v1	NZ_CP048400	Listeria monocytogenes strain AUF chromosome, complete genome	1	1432002-1433622	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	Type II-C,Type II-B,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,36	2	2	1433226-1433256|1433491-1433520	NZ_CP048400.1_2132-2102|NZ_CP048400.1_1402759-1402730	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	24,24,23,23	24	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	NA|236aa|up_6|NZ_CP048400.1_1419150_1419858_+,NA|120aa|up_0|NZ_CP048400.1_1431094_1431454_-,NA|160aa|down_4|NZ_CP048400.1_1440121_1440601_-	NA|84aa|up_9|NZ_CP048400.1_1417893_1418145_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|103aa|up_8|NZ_CP048400.1_1418293_1418602_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|164aa|up_7|NZ_CP048400.1_1418632_1419124_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|236aa|up_6|NZ_CP048400.1_1419150_1419858_+	NA	NA|388aa|up_5|NZ_CP048400.1_1419919_1421083_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NZ_CP048400.1_1426812_1427841_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP048400.1_1428109_1429636_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP048400.1_1429677_1430529_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP048400.1_1430550_1430973_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|120aa|up_0|NZ_CP048400.1_1431094_1431454_-	NA	csn2|221aa|down_0|NZ_CP048400.1_1433750_1434413_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP048400.1_1434402_1434744_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP048400.1_1434740_1435607_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP048400.1_1435607_1439612_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP048400.1_1440121_1440601_-	NA	NA|131aa|down_5|NZ_CP048400.1_1440825_1441218_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP048400.1_1441239_1441677_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP048400.1_1441871_1442618_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP048400.1_1442623_1443421_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP048400.1_1443423_1444290_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_010442835.1_ASM1044283v1	NZ_CP048400	Listeria monocytogenes strain AUF chromosome, complete genome	2	1536270-1536380	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	NA,NA|74aa|down_2|NZ_CP048400.1_1537149_1537371_-,NA|52aa|down_4|NZ_CP048400.1_1539312_1539468_+,NA|214aa|down_5|NZ_CP048400.1_1539500_1540142_-	NA|330aa|up_9|NZ_CP048400.1_1528195_1529185_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP048400.1_1529206_1529803_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP048400.1_1529806_1530181_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP048400.1_1530286_1531138_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP048400.1_1531256_1532096_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP048400.1_1532216_1533059_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP048400.1_1533104_1533350_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP048400.1_1533364_1533961_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP048400.1_1534069_1534387_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP048400.1_1534416_1536156_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP048400.1_1536482_1536947_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP048400.1_1536964_1537147_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP048400.1_1537149_1537371_-	NA	NA|455aa|down_3|NZ_CP048400.1_1537505_1538870_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP048400.1_1539312_1539468_+	NA	NA|214aa|down_5|NZ_CP048400.1_1539500_1540142_-	NA	NA|505aa|down_6|NZ_CP048400.1_1540839_1542354_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP048400.1_1542468_1543407_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP048400.1_1543449_1544397_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP048400.1_1544537_1546277_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
GCF_010442835.1_ASM1044283v1	NZ_CP048400	Listeria monocytogenes strain AUF chromosome, complete genome	3	1901469-1901620	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	Unclear	CCGCCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	47	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	NA,NA	NA|231aa|up_9|NZ_CP048400.1_1888715_1889408_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP048400.1_1889404_1890613_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP048400.1_1891297_1891606_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP048400.1_1891725_1892034_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP048400.1_1892420_1893794_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP048400.1_1893844_1894801_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP048400.1_1894843_1895557_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP048400.1_1895827_1896781_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP048400.1_1897022_1898612_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP048400.1_1898942_1900475_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP048400.1_1902629_1903499_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP048400.1_1903570_1903894_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP048400.1_1904028_1904490_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP048400.1_1904540_1904873_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP048400.1_1904939_1905614_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP048400.1_1905690_1906632_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP048400.1_1906925_1907549_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP048400.1_1907638_1908223_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP048400.1_1908329_1908890_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP048400.1_1909004_1912544_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_010442835.1_ASM1044283v1	NZ_CP048400	Listeria monocytogenes strain AUF chromosome, complete genome	4	2220895-2221503	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	1	1	2221375-2221410	NZ_CP048400.1_3587-3622	I-A:I-A:I-A	9,9,9	9	Orphan	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR	NA|133aa|up_5|NZ_CP048400.1_2215883_2216282_+,NA|193aa|down_0|NZ_CP048400.1_2221894_2222473_+	NA|217aa|up_9|NZ_CP048400.1_2211946_2212597_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP048400.1_2212705_2214766_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP048400.1_2214769_2215372_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP048400.1_2215399_2215867_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP048400.1_2215883_2216282_+	NA	NA|217aa|up_4|NZ_CP048400.1_2216292_2216943_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP048400.1_2216939_2217986_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP048400.1_2218001_2218295_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP048400.1_2218309_2219581_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP048400.1_2219720_2220656_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP048400.1_2221894_2222473_+	NA	NA|227aa|down_1|NZ_CP048400.1_2222580_2223261_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP048400.1_2223285_2223645_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP048400.1_2223651_2224110_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP048400.1_2224491_2226327_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP048400.1_2226427_2226859_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP048400.1_2226905_2228336_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP048400.1_2228456_2229272_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP048400.1_2229552_2229921_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP048400.1_2230067_2231483_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
