assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	1	610035-610174	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP048376.1_602500_603508_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP048376.1_603713_604592_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP048376.1_604600_605596_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP048376.1_605804_606329_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP048376.1_606322_606826_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP048376.1_606812_607115_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP048376.1_607165_607609_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP048376.1_607588_608107_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP048376.1_608234_608870_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP048376.1_608942_609983_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP048376.1_610187_610763_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP048376.1_610772_611363_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP048376.1_611382_611778_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP048376.1_611735_613772_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP048376.1_613836_614697_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP048376.1_614739_615831_-	pfam00419, Fimbrial, Fimbrial protein	NA|252aa|down_6|NZ_CP048376.1_619363_620119_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_7|NZ_CP048376.1_620119_620911_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_8|NZ_CP048376.1_620900_621704_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|159aa|down_9|NZ_CP048376.1_621742_622219_-	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	2	638429-638680	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|180aa|down_1|NZ_CP048376.1_640187_640727_-	NA|158aa|up_9|NZ_CP048376.1_628003_628477_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP048376.1_628499_629780_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP048376.1_630028_630838_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP048376.1_630892_631357_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP048376.1_631356_631692_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP048376.1_631840_633412_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP048376.1_633786_635121_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP048376.1_635136_635907_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP048376.1_635936_636827_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP048376.1_636923_638069_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP048376.1_638978_640166_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP048376.1_640187_640727_-	NA	NA|115aa|down_2|NZ_CP048376.1_640982_641327_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP048376.1_641515_642454_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP048376.1_642552_643542_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP048376.1_643563_644895_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP048376.1_644920_646129_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP048376.1_646162_648457_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP048376.1_648470_648860_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP048376.1_648931_650296_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	3	653261-653378	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP048376.1_653451_653616_-	NA|115aa|up_9|NZ_CP048376.1_640982_641327_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP048376.1_641515_642454_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP048376.1_642552_643542_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP048376.1_643563_644895_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP048376.1_644920_646129_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP048376.1_646162_648457_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP048376.1_648470_648860_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP048376.1_648931_650296_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP048376.1_650570_651902_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP048376.1_651929_653240_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP048376.1_653451_653616_-	NA	NA|234aa|down_1|NZ_CP048376.1_653638_654340_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP048376.1_654444_655341_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP048376.1_655391_655748_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP048376.1_655989_656355_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP048376.1_656647_657634_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP048376.1_657703_658186_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP048376.1_658281_658581_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP048376.1_658570_658975_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP048376.1_658977_659283_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	4	1026711-1027227	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP048376.1_1025420_1025561_-,NA	NA|434aa|up_9|NZ_CP048376.1_1016117_1017419_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP048376.1_1017466_1019701_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP048376.1_1019778_1020027_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP048376.1_1020026_1020362_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP048376.1_1020432_1021224_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP048376.1_1021451_1023089_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP048376.1_1023176_1024475_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP048376.1_1024534_1025407_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP048376.1_1025420_1025561_-	NA	NA|224aa|up_0|NZ_CP048376.1_1025699_1026371_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP048376.1_1027864_1029343_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP048376.1_1029369_1030647_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP048376.1_1030965_1031751_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP048376.1_1031820_1033275_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP048376.1_1033296_1034706_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP048376.1_1034683_1035463_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP048376.1_1035459_1036320_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP048376.1_1036467_1037043_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP048376.1_1037059_1037320_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP048376.1_1037310_1038582_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	5	1049612-1050190	4,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP048376.1_1037310_1038582_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP048376.1_1038659_1039025_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP048376.1_1039340_1041140_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP048376.1_1041139_1042852_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP048376.1_1042925_1043660_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP048376.1_1043924_1044077_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP048376.1_1046927_1047674_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP048376.1_1047655_1048306_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP048376.1_1048302_1049226_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP048376.1_1049222_1049516_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP048376.1_1050271_1051309_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP048376.1_1051560_1052469_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP048376.1_1052470_1053898_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP048376.1_1053897_1054503_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP048376.1_1054552_1054876_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP048376.1_1055069_1055381_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP048376.1_1055399_1056110_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP048376.1_1056109_1056589_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP048376.1_1056585_1057635_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP048376.1_1057615_1058377_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	6	1556696-1556813	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP048376.1_1551776_1552091_-,NA	NA|300aa|up_9|NZ_CP048376.1_1543689_1544589_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP048376.1_1544781_1545972_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP048376.1_1545968_1547228_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP048376.1_1547217_1548846_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP048376.1_1549118_1550477_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP048376.1_1550481_1551558_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP048376.1_1551776_1552091_-	NA	NA|217aa|up_2|NZ_CP048376.1_1554510_1555161_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP048376.1_1555214_1555469_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP048376.1_1555468_1556599_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP048376.1_1556832_1559118_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP048376.1_1559813_1563566_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP048376.1_1563693_1564416_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP048376.1_1564562_1567190_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP048376.1_1567338_1569027_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP048376.1_1569023_1569647_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP048376.1_1569790_1574185_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP048376.1_1574185_1575835_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP048376.1_1575839_1576616_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP048376.1_1576689_1577874_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	7	2165245-2165368	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP048376.1_2174264_2174354_+	NA|471aa|up_9|NZ_CP048376.1_2154699_2156112_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP048376.1_2156667_2156877_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP048376.1_2157332_2157959_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP048376.1_2157979_2160082_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP048376.1_2160094_2160733_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP048376.1_2160796_2161465_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP048376.1_2161461_2162247_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP048376.1_2162250_2163063_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP048376.1_2163074_2164679_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP048376.1_2164804_2165110_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048376.1_2165682_2166939_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048376.1_2166979_2168353_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048376.1_2168567_2169209_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048376.1_2169248_2170397_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048376.1_2170687_2171899_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP048376.1_2172011_2172944_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048376.1_2172940_2173966_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048376.1_2174264_2174354_+	NA	NA|390aa|down_8|NZ_CP048376.1_2174519_2175689_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048376.1_2175834_2176416_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	8	2885518-2885609	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP048376.1_2873102_2874611_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP048376.1_2875032_2878995_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048376.1_2879034_2879673_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048376.1_2879960_2881052_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048376.1_2881051_2881744_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048376.1_2881755_2882142_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048376.1_2882149_2882950_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048376.1_2882959_2883550_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048376.1_2883560_2884055_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048376.1_2884075_2885404_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048376.1_2886032_2886629_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048376.1_2886649_2886877_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048376.1_2886914_2888156_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP048376.1_2888447_2889707_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP048376.1_2889966_2890887_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP048376.1_2890886_2891192_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP048376.1_2891284_2891884_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP048376.1_2891880_2894427_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP048376.1_2894426_2895599_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP048376.1_2895728_2896421_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	9	3185562-3185706	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_6|NZ_CP048376.1_3180947_3181229_+,NA|201aa|up_4|NZ_CP048376.1_3181759_3182362_-,NA|56aa|up_3|NZ_CP048376.1_3182604_3182772_+,NA	NA|227aa|up_9|NZ_CP048376.1_3179913_3180594_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP048376.1_3180590_3180773_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP048376.1_3180745_3180937_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP048376.1_3180947_3181229_+	NA	NA|74aa|up_5|NZ_CP048376.1_3181327_3181549_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP048376.1_3181759_3182362_-	NA	NA|56aa|up_3|NZ_CP048376.1_3182604_3182772_+	NA	NA|73aa|up_2|NZ_CP048376.1_3182811_3183030_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP048376.1_3183007_3184078_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP048376.1_3184212_3185496_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP048376.1_3185729_3187991_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP048376.1_3188173_3189607_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP048376.1_3189682_3190735_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP048376.1_3190918_3191872_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP048376.1_3191912_3192908_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP048376.1_3193062_3193881_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP048376.1_3193881_3194940_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP048376.1_3194942_3195632_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP048376.1_3195631_3196405_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP048376.1_3196571_3196721_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_010365545.1_ASM1036554v1	NZ_CP048376	Escherichia coli strain 38 chromosome, complete genome	10	3696376-3696529	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP048376.1_3706106_3706556_-	NA|352aa|up_9|NZ_CP048376.1_3686201_3687257_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP048376.1_3687295_3687697_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP048376.1_3687754_3688999_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP048376.1_3689090_3689549_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP048376.1_3689809_3691267_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP048376.1_3691623_3691890_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP048376.1_3692196_3692649_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP048376.1_3692645_3693701_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP048376.1_3693771_3694557_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP048376.1_3694501_3696241_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP048376.1_3696558_3697056_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP048376.1_3697231_3697990_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP048376.1_3698281_3699022_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP048376.1_3698992_3699760_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP048376.1_3699965_3700544_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP048376.1_3700783_3703228_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP048376.1_3703270_3703744_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP048376.1_3703897_3704668_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP048376.1_3706106_3706556_-	NA	NA|451aa|down_9|NZ_CP048376.1_3711468_3712821_+	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
