assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365445.1_ASM1036544v1	NZ_CP048349	Raoultella ornithinolytica strain 23 chromosome, complete genome	1	161172-161316	1	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	GGGGATTCCCGGACATGGCGCCTGATACGCCTGTCCGGCCAGCG	44	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL,cas14j	NA,NA|75aa|down_1|NZ_CP048349.1_162024_162249_+	NA|515aa|up_9|NZ_CP048349.1_151460_153005_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|144aa|up_8|NZ_CP048349.1_153250_153682_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|84aa|up_7|NZ_CP048349.1_153791_154043_+	PRK10638, PRK10638, glutaredoxin 3; Provisional	NA|156aa|up_6|NZ_CP048349.1_154101_154569_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|339aa|up_5|NZ_CP048349.1_154568_155585_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|274aa|up_4|NZ_CP048349.1_155665_156487_+	PRK11132, cysE, serine acetyltransferase; Provisional	NA|158aa|up_3|NZ_CP048349.1_156664_157138_-	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL	NA|395aa|up_2|NZ_CP048349.1_157231_158416_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|258aa|up_1|NZ_CP048349.1_158415_159189_-	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|552aa|up_0|NZ_CP048349.1_159185_160841_-	PRK10420, PRK10420, L-lactate permease; Provisional	NA|121aa|down_0|NZ_CP048349.1_161386_161749_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|75aa|down_1|NZ_CP048349.1_162024_162249_+	NA	NA|200aa|down_2|NZ_CP048349.1_162237_162837_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|down_3|NZ_CP048349.1_162833_163982_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|640aa|down_4|NZ_CP048349.1_164104_166024_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|119aa|down_5|NZ_CP048349.1_166688_167045_+	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|379aa|down_6|NZ_CP048349.1_167047_168184_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|203aa|down_7|NZ_CP048349.1_168565_169174_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|463aa|down_8|NZ_CP048349.1_169280_170669_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|614aa|down_9|NZ_CP048349.1_170665_172507_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional
GCF_010365445.1_ASM1036544v1	NZ_CP048349	Raoultella ornithinolytica strain 23 chromosome, complete genome	2	1062832-1065849	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	1064752-1064783	NZ_CP048351.1_100347-100316	I-E:I-E:I-E	49,49,29	49	TypeI-E	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL,cas14j	NA,NA	cas3|902aa|up_9|NZ_CP048349.1_1053054_1055760_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|NZ_CP048349.1_1055852_1056152_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|NZ_CP048349.1_1056161_1056503_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|NZ_CP048349.1_1056862_1058398_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP048349.1_1058414_1059017_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP048349.1_1059039_1060095_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP048349.1_1060104_1060830_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP048349.1_1060829_1061534_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP048349.1_1061533_1062451_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP048349.1_1062453_1062747_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|348aa|down_0|NZ_CP048349.1_1065912_1066956_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|469aa|down_1|NZ_CP048349.1_1067203_1068610_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_2|NZ_CP048349.1_1068619_1069528_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_3|NZ_CP048349.1_1069537_1070965_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_4|NZ_CP048349.1_1070964_1071570_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_5|NZ_CP048349.1_1071618_1071945_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_6|NZ_CP048349.1_1072085_1072397_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_7|NZ_CP048349.1_1072416_1073127_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_8|NZ_CP048349.1_1073126_1073606_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_9|NZ_CP048349.1_1073602_1074652_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed
GCF_010365445.1_ASM1036544v1	NZ_CP048349	Raoultella ornithinolytica strain 23 chromosome, complete genome	3	4857865-4857954	3	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	TACGCCTTATCCGGCCTACAGATTC	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL,cas14j	NA,NA	NA|216aa|up_9|NZ_CP048349.1_4846678_4847326_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_8|NZ_CP048349.1_4847439_4847955_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|109aa|up_7|NZ_CP048349.1_4847941_4848268_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_6|NZ_CP048349.1_4848421_4850359_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_5|NZ_CP048349.1_4850592_4852260_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|up_4|NZ_CP048349.1_4852328_4853561_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_3|NZ_CP048349.1_4853706_4855089_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|up_2|NZ_CP048349.1_4855099_4856071_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|212aa|up_1|NZ_CP048349.1_4856174_4856810_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_0|NZ_CP048349.1_4856827_4857844_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_0|NZ_CP048349.1_4858011_4858731_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_1|NZ_CP048349.1_4858834_4860058_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_2|NZ_CP048349.1_4860110_4861433_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_3|NZ_CP048349.1_4861589_4862369_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|260aa|down_4|NZ_CP048349.1_4862837_4863617_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_5|NZ_CP048349.1_4863613_4864687_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_6|NZ_CP048349.1_4864937_4865099_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|204aa|down_7|NZ_CP048349.1_4865353_4865965_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_8|NZ_CP048349.1_4866183_4867773_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_9|NZ_CP048349.1_4867864_4868542_-	PRK09449, PRK09449, dUMP phosphatase; Provisional
GCF_010365445.1_ASM1036544v1	NZ_CP048349	Raoultella ornithinolytica strain 23 chromosome, complete genome	4	4910004-4910087	4	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL	Orphan	ACCGTAGGCCGGGTAAGCGTAGCGCC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,csa3,DEDDh,DinG,WYL,cas14j	NA,NA	NA|316aa|up_9|NZ_CP048349.1_4901459_4902407_+	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|370aa|up_8|NZ_CP048349.1_4902403_4903513_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|88aa|up_7|NZ_CP048349.1_4903509_4903773_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|422aa|up_6|NZ_CP048349.1_4903753_4905019_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|152aa|up_5|NZ_CP048349.1_4905020_4905476_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|211aa|up_4|NZ_CP048349.1_4905765_4906398_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|255aa|up_3|NZ_CP048349.1_4906394_4907159_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|489aa|up_2|NZ_CP048349.1_4907155_4908622_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|286aa|up_1|NZ_CP048349.1_4908693_4909551_+	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|127aa|up_0|NZ_CP048349.1_4909560_4909941_+	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|268aa|down_0|NZ_CP048349.1_4910136_4910940_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|266aa|down_1|NZ_CP048349.1_4910950_4911748_+	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA|453aa|down_2|NZ_CP048349.1_4911769_4913128_+	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|297aa|down_3|NZ_CP048349.1_4913137_4914028_+	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|521aa|down_4|NZ_CP048349.1_4914376_4915939_+	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA|171aa|down_5|NZ_CP048349.1_4915958_4916471_+	PRK15486, hpaC, 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional	NA|717aa|down_6|NZ_CP048349.1_4916805_4918956_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|68aa|down_7|NZ_CP048349.1_4919054_4919258_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|319aa|down_8|NZ_CP048349.1_4919269_4920226_+	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional	NA|182aa|down_9|NZ_CP048349.1_4920704_4921250_+	pfam07437, YfaZ, YfaZ precursor
