assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	1	1082689-1083266	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|919aa|up_9|NZ_CP048310.1_1069282_1072039_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP048310.1_1072095_1073397_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP048310.1_1073444_1075679_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP048310.1_1075756_1076005_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP048310.1_1076004_1076340_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP048310.1_1076411_1077203_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP048310.1_1077430_1079068_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP048310.1_1079154_1080453_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP048310.1_1080512_1081385_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP048310.1_1081678_1082350_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP048310.1_1083903_1085382_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP048310.1_1085408_1086686_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP048310.1_1087004_1087790_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP048310.1_1087859_1089314_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP048310.1_1089335_1090745_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP048310.1_1090722_1091502_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP048310.1_1091498_1092359_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP048310.1_1092458_1093807_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP048310.1_1093941_1094517_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP048310.1_1094533_1094794_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	2	1111753-1112388	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,10	10	TypeI-E	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|51aa|up_9|NZ_CP048310.1_1101398_1101551_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP048310.1_1101627_1102740_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP048310.1_1103094_1105794_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP048310.1_1105891_1107454_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP048310.1_1107450_1107987_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP048310.1_1108001_1109057_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP048310.1_1109067_1109814_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP048310.1_1109795_1110446_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP048310.1_1110442_1111366_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP048310.1_1111362_1111656_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP048310.1_1112411_1113449_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP048310.1_1113700_1114609_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP048310.1_1114610_1116038_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP048310.1_1116037_1116643_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP048310.1_1116692_1117016_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP048310.1_1117209_1117521_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP048310.1_1117539_1118250_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP048310.1_1118249_1118729_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP048310.1_1118725_1119775_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP048310.1_1119755_1120517_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	3	2090260-2090393	3	CRISPRCasFinder	no	DEDDh	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CCGCATCCGACATTGGCAGTGTGCCTGATGCGACGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|22aa|up_2|NZ_CP048310.1_2088405_2088471_+,NA	NA|273aa|up_9|NZ_CP048310.1_2082373_2083192_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP048310.1_2083188_2083755_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP048310.1_2084064_2085837_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP048310.1_2085954_2086407_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP048310.1_2086435_2087176_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP048310.1_2087210_2087732_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP048310.1_2087733_2088336_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP048310.1_2088405_2088471_+	NA	NA|204aa|up_1|NZ_CP048310.1_2088609_2089221_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP048310.1_2089229_2090240_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP048310.1_2090483_2091269_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP048310.1_2091265_2092021_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP048310.1_2092099_2093032_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP048310.1_2093047_2094370_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP048310.1_2094489_2095461_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP048310.1_2095592_2097035_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP048310.1_2097162_2098032_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP048310.1_2098369_2099845_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP048310.1_2100079_2101891_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP048310.1_2101927_2102569_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	4	2281916-2282039	4	CRISPRCasFinder	no	DEDDh	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP048310.1_2290935_2291025_+	NA|70aa|up_9|NZ_CP048310.1_2272026_2272236_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_8|NZ_CP048310.1_2272690_2273317_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_7|NZ_CP048310.1_2273337_2275440_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_6|NZ_CP048310.1_2275452_2276091_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_5|NZ_CP048310.1_2276154_2276823_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_4|NZ_CP048310.1_2276819_2277605_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_3|NZ_CP048310.1_2277608_2278421_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|405aa|up_2|NZ_CP048310.1_2279511_2280725_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|200aa|up_1|NZ_CP048310.1_2280750_2281350_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP048310.1_2281475_2281781_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048310.1_2282353_2283610_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048310.1_2283650_2285024_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048310.1_2285238_2285880_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048310.1_2285919_2287068_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048310.1_2287358_2288570_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP048310.1_2288682_2289615_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048310.1_2289611_2290637_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048310.1_2290935_2291025_+	NA	NA|390aa|down_8|NZ_CP048310.1_2291190_2292360_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048310.1_2292505_2293087_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	5	2950606-2950697	5	CRISPRCasFinder	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP048310.1_2939682_2939892_-,NA	NA|70aa|up_9|NZ_CP048310.1_2939682_2939892_-	NA	NA|1321aa|up_8|NZ_CP048310.1_2939946_2943909_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048310.1_2943948_2944587_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048310.1_2944874_2945966_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048310.1_2945965_2946658_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048310.1_2946669_2947056_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048310.1_2947063_2947864_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048310.1_2947873_2948464_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048310.1_2948474_2948969_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048310.1_2948989_2950318_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048310.1_2951120_2951717_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048310.1_2951737_2951965_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048310.1_2952002_2953244_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP048310.1_2953536_2954793_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP048310.1_2955053_2955974_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP048310.1_2955973_2956279_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP048310.1_2956430_2957030_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP048310.1_2957026_2959573_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP048310.1_2959572_2960745_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP048310.1_2960874_2961567_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	6	3244785-3244929	6	CRISPRCasFinder	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP048310.1_3232683_3233673_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP048310.1_3234069_3234978_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP048310.1_3235169_3237191_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP048310.1_3237769_3238447_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP048310.1_3238439_3239195_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP048310.1_3239181_3240336_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP048310.1_3240332_3241373_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP048310.1_3241459_3242749_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP048310.1_3242807_3243284_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP048310.1_3243435_3244719_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP048310.1_3244952_3247214_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP048310.1_3247396_3248830_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP048310.1_3248905_3249958_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP048310.1_3250141_3251095_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP048310.1_3251135_3252131_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP048310.1_3252285_3253104_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP048310.1_3253104_3254163_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP048310.1_3254165_3254855_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP048310.1_3254854_3255628_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP048310.1_3255794_3255944_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	7	3493460-3493556	7	CRISPRCasFinder	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP048310.1_3485255_3485948_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP048310.1_3486167_3486710_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP048310.1_3487180_3488047_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP048310.1_3488048_3488261_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP048310.1_3488368_3488890_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP048310.1_3488925_3490311_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP048310.1_3490484_3490979_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP048310.1_3490981_3491704_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP048310.1_3491821_3492331_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP048310.1_3492327_3493395_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP048310.1_3493589_3494483_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP048310.1_3494479_3495295_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP048310.1_3495305_3496565_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP048310.1_3496574_3498242_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP048310.1_3498558_3499608_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP048310.1_3499629_3500865_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP048310.1_3500875_3501661_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP048310.1_3501888_3503034_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP048310.1_3503055_3504357_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP048310.1_3504413_3505775_-	PRK08044, PRK08044, allantoinase AllB
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	8	3633601-3633745	8	CRISPRCasFinder	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|28aa|down_2|NZ_CP048310.1_3635790_3635874_-	NA|357aa|up_9|NZ_CP048310.1_3618739_3619810_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP048310.1_3619902_3620484_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP048310.1_3620488_3622306_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP048310.1_3622461_3623835_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP048310.1_3623910_3625230_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP048310.1_3625636_3626932_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP048310.1_3626989_3627679_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP048310.1_3627868_3629071_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP048310.1_3629067_3632214_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP048310.1_3632339_3633524_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP048310.1_3633768_3634677_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP048310.1_3634801_3635713_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP048310.1_3635790_3635874_-	NA	NA|95aa|down_3|NZ_CP048310.1_3636359_3636644_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP048310.1_3636715_3637393_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP048310.1_3637650_3637842_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP048310.1_3637891_3638416_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP048310.1_3638598_3639057_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP048310.1_3639176_3639986_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP048310.1_3640002_3641118_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	9	4063729-4063864	3	PILER-CR	no		RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP048310.1_4054437_4054815_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP048310.1_4054821_4055664_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP048310.1_4055741_4056221_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP048310.1_4056412_4058275_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP048310.1_4058267_4058798_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP048310.1_4058905_4060237_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP048310.1_4060293_4060581_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP048310.1_4060577_4061864_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP048310.1_4061914_4062856_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP048310.1_4062870_4063641_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP048310.1_4064113_4065628_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP048310.1_4065658_4066801_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP048310.1_4066918_4068136_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|507aa|down_3|NZ_CP048310.1_4068242_4069763_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP048310.1_4069871_4070657_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP048310.1_4070662_4071253_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP048310.1_4071371_4071767_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP048310.1_4072027_4075246_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP048310.1_4075263_4076412_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP048310.1_4076867_4077689_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_010365345.1_ASM1036534v1	NZ_CP048310	Escherichia coli strain 32-4 chromosome, complete genome	10	4240983-4241132	9	CRISPRCasFinder	no	RT	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|59aa|up_9|NZ_CP048310.1_4230546_4230723_-,NA|62aa|up_8|NZ_CP048310.1_4230910_4231096_+,NA|213aa|up_6|NZ_CP048310.1_4231800_4232439_-,NA	NA|59aa|up_9|NZ_CP048310.1_4230546_4230723_-	NA	NA|62aa|up_8|NZ_CP048310.1_4230910_4231096_+	NA	NA|77aa|up_7|NZ_CP048310.1_4231192_4231423_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP048310.1_4231800_4232439_-	NA	NA|421aa|up_5|NZ_CP048310.1_4232468_4233731_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP048310.1_4234175_4235195_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP048310.1_4235322_4236825_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP048310.1_4236985_4238068_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP048310.1_4238067_4239168_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP048310.1_4239434_4240946_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP048310.1_4241299_4241743_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP048310.1_4241742_4244598_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|323aa|down_2|NZ_CP048310.1_4245339_4246308_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|168aa|down_3|NZ_CP048310.1_4247095_4247599_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP048310.1_4247644_4248061_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP048310.1_4248222_4249227_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP048310.1_4251149_4251602_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP048310.1_4251746_4252340_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP048310.1_4252410_4253124_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP048310.1_4253254_4253650_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
