assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010231685.1_ASM1023168v1	NZ_CP034935	Shigella dysenteriae strain 79-8006 chromosome, complete genome	1	444304-444427	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2,RT	NA,NA|30aa|down_7|NZ_CP034935.1_453323_453413_+	NA|424aa|up_9|NZ_CP034935.1_433730_435002_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_8|NZ_CP034935.1_434998_436219_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_7|NZ_CP034935.1_436231_436648_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|335aa|up_6|NZ_CP034935.1_436796_437801_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_5|NZ_CP034935.1_437864_438101_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_4|NZ_CP034935.1_438411_439824_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|20aa|up_3|NZ_CP034935.1_440381_440441_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_2|NZ_CP034935.1_441575_442202_-	PRK09898, PRK09898, ferredoxin-like protein	NA|61aa|up_1|NZ_CP034935.1_442657_442840_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|102aa|up_0|NZ_CP034935.1_443874_444180_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP034935.1_444741_445998_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP034935.1_446038_447412_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP034935.1_447626_448268_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP034935.1_448307_449456_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP034935.1_449746_450958_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP034935.1_451070_452003_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP034935.1_451999_453025_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP034935.1_453323_453413_+	NA	NA|390aa|down_8|NZ_CP034935.1_453578_454748_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP034935.1_454893_455475_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_010231685.1_ASM1023168v1	NZ_CP034935	Shigella dysenteriae strain 79-8006 chromosome, complete genome	2	1932985-1933100	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2,RT	NA,NA	NA|202aa|up_9|NZ_CP034935.1_1920443_1921049_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|361aa|up_8|NZ_CP034935.1_1921097_1922180_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_7|NZ_CP034935.1_1922281_1922413_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_6|NZ_CP034935.1_1922501_1924157_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_5|NZ_CP034935.1_1924320_1925304_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_4|NZ_CP034935.1_1925279_1926890_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_3|NZ_CP034935.1_1926873_1927572_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_2|NZ_CP034935.1_1927685_1928450_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|567aa|up_1|NZ_CP034935.1_1929751_1931452_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP034935.1_1931462_1932965_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP034935.1_1933164_1933860_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP034935.1_1933934_1936286_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP034935.1_1936449_1939356_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP034935.1_1939367_1940027_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP034935.1_1940143_1940959_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP034935.1_1941213_1943568_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP034935.1_1943620_1944907_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP034935.1_1944906_1945896_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP034935.1_1945892_1946714_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP034935.1_1946716_1947094_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_010231685.1_ASM1023168v1	NZ_CP034935	Shigella dysenteriae strain 79-8006 chromosome, complete genome	3	2015415-2015563	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2	Orphan	TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTGTGCGCC	48	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,WYL,c2c9_V-U4,c2c8_V-U2,csa3,cas6e,cas5,cse2gr11,cas2,RT	NA|50aa|up_5|NZ_CP034935.1_2006817_2006967_+,NA	NA|461aa|up_9|NZ_CP034935.1_2002592_2003975_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|323aa|up_8|NZ_CP034935.1_2004023_2004992_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|215aa|up_7|NZ_CP034935.1_2005097_2005742_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_6|NZ_CP034935.1_2005769_2006786_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|50aa|up_5|NZ_CP034935.1_2006817_2006967_+	NA	NA|240aa|up_4|NZ_CP034935.1_2007241_2007961_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|up_3|NZ_CP034935.1_2008040_2009264_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|up_2|NZ_CP034935.1_2009315_2010638_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|up_1|NZ_CP034935.1_2010764_2011544_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|383aa|up_0|NZ_CP034935.1_2012025_2013173_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|261aa|down_0|NZ_CP034935.1_2015593_2016376_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_1|NZ_CP034935.1_2016372_2017446_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_2|NZ_CP034935.1_2017567_2017729_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|202aa|down_3|NZ_CP034935.1_2017855_2018461_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_4|NZ_CP034935.1_2018853_2020443_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|234aa|down_5|NZ_CP034935.1_2020508_2021210_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|down_6|NZ_CP034935.1_2021224_2021671_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|down_7|NZ_CP034935.1_2021639_2022053_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|down_8|NZ_CP034935.1_2022155_2023187_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_9|NZ_CP034935.1_2023814_2024051_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)
