The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	207141	272533	2736723	transposase,holin,tRNA	uncultured_Mediterranean_phage(18.18%)	60	NA	NA
WP_002294192.1|207141_208317_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
WP_002296565.1|208509_209541_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002289743.1|210159_212799_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.2	1.6e-84
WP_002296566.1|212966_213665_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_002294183.1|213882_215028_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
WP_002294182.1|215124_215505_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_002296567.1|215809_218407_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002288261.1|218635_219742_+	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002288260.1|219758_220787_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002288258.1|220792_221272_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_002288256.1|221287_222583_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_002288254.1|222593_223418_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_002288252.1|223582_224482_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288251.1|224607_225477_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288250.1|225629_227090_+	rhamnulokinase	NA	NA	NA	NA	NA
WP_002288249.1|227086_228343_+	L-rhamnose isomerase	NA	NA	NA	NA	NA
WP_002288248.1|228356_229202_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
WP_002288247.1|229203_229515_+	L-rhamnose mutarotase	NA	NA	NA	NA	NA
WP_002297404.1|229719_230970_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002288246.1|231379_232531_+	lactaldehyde reductase	NA	NA	NA	NA	NA
WP_002294170.1|232657_233416_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288242.1|233515_234160_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_002288240.1|234166_235174_+	sugar kinase	NA	NA	NA	NA	NA
WP_002288239.1|235189_236032_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002294167.1|236051_236855_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002288234.1|237103_238168_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_162166402.1|238164_239250_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_002288232.1|239262_240240_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_002288231.1|240232_241177_-	mevalonate kinase	NA	NA	NA	NA	NA
WP_002322895.1|241498_242152_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.3	1.1e-58
WP_002294163.1|242236_243142_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002294161.1|243143_243776_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002293357.1|244095_244620_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
WP_002289309.1|244691_244892_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002289310.1|244944_245304_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002289312.1|245555_246893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289314.1|246940_249070_+	hydantoinase	NA	NA	NA	NA	NA
WP_002289315.1|249044_249734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002315615.1|250967_251162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289317.1|251211_251652_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_002289318.1|251655_252501_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_002294157.1|252649_254068_+	dipeptidase PepV	NA	NA	NA	NA	NA
WP_138820985.1|254124_255072_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002289862.1|255294_255645_-	peptidase	NA	NA	NA	NA	NA
WP_002294156.1|255844_256924_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
WP_002287837.1|257067_257388_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287838.1|257409_257874_+	universal stress protein	NA	NA	NA	NA	NA
WP_002294153.1|258078_258684_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_002302440.1|258903_260205_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002297218.1|260343_261639_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294152.1|261745_263035_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
WP_002287841.1|263462_263942_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_002296569.1|264026_264536_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
WP_002296570.1|264635_265286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291914.1|265736_266675_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002291912.1|266687_267740_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002297185.1|268040_269336_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002296392.1|269527_270163_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002296391.1|270353_271145_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002295743.1|271624_272533_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	277362	335712	2736723	transposase,tRNA	Staphylococcus_phage(33.33%)	49	NA	NA
WP_000222572.1|277362_278316_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294735.1|278414_279131_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_002296623.1|279329_280625_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_025478783.1|280671_282720_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_002294732.1|283929_285171_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_002294730.1|285317_285953_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002294728.1|286143_286884_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_065305737.1|287176_288349_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.7e-121
WP_002321965.1|289963_290485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|290523_291702_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002287592.1|291771_293178_+	membrane protein	NA	NA	NA	NA	NA
WP_002287590.1|293164_294799_+	membrane protein	NA	NA	NA	NA	NA
WP_002323245.1|294900_296073_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002287588.1|296305_297139_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002287587.1|297218_298208_+	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA	NA
WP_002287585.1|298496_299195_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002287584.1|299344_300661_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287583.1|300677_302093_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_002287582.1|302556_302877_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002287579.1|302902_303220_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287577.1|303248_304502_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287575.1|304632_305097_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002287574.1|305125_305446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287572.1|305476_306610_-	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	24.8	2.5e-13
WP_147581529.1|306987_307179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138820989.1|307383_309078_-	oleate hydratase	NA	NA	NA	NA	NA
WP_002287569.1|309134_309263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321251.1|309261_309510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287567.1|309701_310067_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_002287564.1|310063_310429_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_002287562.1|310520_311948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287561.1|312417_314253_+	tyrosine decarboxylase	NA	NA	NA	NA	NA
WP_002287560.1|314557_316036_+	amino acid permease	NA	NA	NA	NA	NA
WP_002287558.1|316001_317333_+	amino acid permease	NA	NA	NA	NA	NA
WP_002287556.1|317446_319999_+	HAD-IC family P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	29.7	3.6e-68
WP_002287554.1|320005_321445_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002287552.1|321790_322153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287551.1|322339_323197_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002287550.1|323316_324228_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002287549.1|324234_325881_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_002287548.1|325982_326282_+	malonate decarboxylase subunit delta	NA	NA	NA	NA	NA
WP_002287546.1|326271_327948_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_002287544.1|327951_328545_+	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA	NA
WP_002287542.1|328568_329645_+	acyltransferase	NA	NA	NA	NA	NA
WP_002287541.1|329669_330539_+	triphosphoribosyl-dephospho-CoA synthase MdcB	NA	NA	NA	NA	NA
WP_002287538.1|330649_331414_+	TIM44-like domain-containing protein	NA	NA	NA	NA	NA
WP_002287536.1|331902_333996_+	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002287534.1|334020_334323_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_086953915.1|334372_335712_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
>prophage 3
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	565894	630545	2736723	transposase,integrase	Streptococcus_phage(19.05%)	57	565813:565872	630568:632081
565813:565872	attL	GGCTCTTTGTCAATAAGGACTGATGAGTTGTGCAAAATCAAATCTGAGTCAGAATGAACC	NA	NA	NA	NA
WP_002297218.1|565894_567190_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002287679.1|567501_568275_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	2.1e-08
WP_002287681.1|568287_569574_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002287683.1|569570_570806_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.7	3.9e-113
WP_002287684.1|570792_571263_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_002287686.1|571267_572659_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_002287688.1|572756_573899_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	36.3	4.6e-60
WP_002287690.1|573949_574747_-	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	39.0	2.6e-09
WP_002287692.1|574948_575248_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002287693.1|575512_576388_+	hypothetical protein	NA	M4ZS60	Bacillus_phage	37.8	3.3e-13
WP_002321927.1|576384_576603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287694.1|576589_579217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297018.1|579231_579450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002329547.1|580968_581283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287697.1|581335_582109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287739.1|582213_582459_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287698.1|582614_583466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287699.1|583498_584935_+	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	29.4	2.5e-10
WP_002287700.1|584936_585422_+	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_002287705.1|586049_587192_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	34.8	3.3e-58
WP_002287709.1|587230_587965_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287723.1|588196_588472_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002287725.1|588569_590567_+	hypothetical protein	NA	A0A1Z1LZK7	Bacillus_phage	23.8	5.2e-22
WP_002287726.1|590642_590978_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296546.1|591106_591322_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	41.8	4.7e-06
WP_002287729.1|591358_591724_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_002287730.1|591760_592087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287731.1|592240_592966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287732.1|593475_595068_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.9	6.8e-126
WP_002287733.1|595060_596305_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	26.9	3.3e-19
WP_002287735.1|596318_599468_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_074394723.1|600185_601649_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.3	1.2e-121
WP_002288539.1|602961_603627_-	helix-turn-helix domain-containing protein	NA	A0A2I7SCV6	Paenibacillus_phage	47.8	1.1e-05
WP_002288541.1|603752_605789_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
WP_002291166.1|605792_606431_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	5.9e-12
WP_002288545.1|606458_606887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288548.1|607343_608255_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002296840.1|608415_609603_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002321907.1|609945_610383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288550.1|610477_611362_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002296199.1|611585_614753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288554.1|614772_615318_+	DUF916 domain-containing protein	NA	NA	NA	NA	NA
WP_002288556.1|615345_615801_+	DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_002288559.1|615797_616556_+	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_002288561.1|616641_617382_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002296197.1|617442_618696_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_002293846.1|619017_619245_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002293844.1|619367_619694_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002296196.1|619761_620475_+	class A sortase	NA	NA	NA	NA	NA
WP_002291144.1|620784_621636_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002296194.1|621756_623622_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002293840.1|623669_625079_+	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	28.0	6.6e-32
WP_002293839.1|625186_625888_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293608.1|627373_627949_+	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	44.9	1.5e-35
WP_002293607.1|627948_628389_+	nucleoside deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	50.7	8.9e-36
WP_002293834.1|628404_629106_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	48.6	7.8e-50
WP_002297218.1|629249_630545_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
630568:632081	attR	GGTTCATTCTGACTCAGATTTGATTTTGCACAACTCATCAGTCCTTATTGACAAAGAGCCAAAATAAAAAACCAAACGACGGGAAAGAAAAATTACTACGTGATGTAGAATAAGCCTTTCTATCGTTTGGTTATTTTATATTCAAATATTTGAAATAAATAAATCTTTACTCTTTGATTTGTAAACTGAAATGATCCACTGTTTGTTTTACTGATGAAGCTTGATCAAAGGAAGAAGCTGAGTTTGAAGTTCATAAAAATCAGCCATAGTGAGTTTTGCTTGGATTTGTTTATCTTCTTCTACTTTTTACATAATTTTGAACAGGATAAGATTCAAATGTTTTAAATGAATCTTTGACTAGTTTGTGACAGTTGTCGCATATGCTCAAGCTTCCTTGGTCATTAAATTCTGTATGGATATTTTTGTTGTTATTACATGTACAATAATCAGGACTATCGATCATCCATTTCGTCTCCTTTACAATCATCTTGCTTCTTTACTATAGCAGAAAAGAAGGGGAGAAACAAAAGAAGATCCAACAGACGGCACTATAGACTGTAGATGTTGCCATCCTCATCCTTCAAACGGTAATTACCGATTTTTGTAAATATGACTGTTGTTTCTTTTTTATTTTCTTTTCCTGAAATAATATATTCGTCATCTTTGGTAGTGATCTTGATATCTGTCAGCACTGTTTTTTCTTCAGATGATTCAGAAGAATCAGTTCCTTGTGTCTGATACGTGCGTGTCCATTCCATTTTTTTATCTGTAAATGTCAACTGTCCCGCGGATAAATCCATATCTTTACGTACTTTTAGCGTATATACACTGTTGGTGGTATCTGCTTTTTCCGCTTTTAAGACAGAAGAATCGGTTGTTTCGTCCGAGGATTGGTCAGAGCCGCCAAACAAATCACAGCCAGTCAATGTCAAAAGTCCCGCAGACAAAATAAATAGTACGATTAATTTCTTCAAAATACTTCCCCCATTTGATAGGATAAAGAAATTATACCATTGGAATGTAAAACTTCAAACGGATGGAAGAGAAAAACGCACAAAACACCCACAAATAGAGTAAATTTTAGAATAAAATTTTAAAAAGGCAAAAAATCCGCCACTTTCAGAAAGCGTTTTAAAAAAGTGTTGCAATCTTTTAAAAAAATGCTATATTAAAAATGAACCGGTTCAAATACTTGTTTAAGTATAATTAATAGTGAGAGGAAGTTGCTCTACTGAAGACTTTAGTTATATGGATATTGATGACAAGCAACACTATGCAAAGAATGCGGTCATCATAATCGAACAACAAGAAAGAGAAATCAAATGTAACTGGCAGGAGTGAGAATGTATGGCATCGATCCGTGATGTGGCTAAGATGGCTGGTGTTTCAGTGGGAACAGTTTCCCGTTACTTGAATGGTCAGCAACTGAAGGAAAAGAACATGAAAAAAATAGCAGAAGCGATTTCAGCGTTGGACTATAAAGAAAACATCATTGCTAAAGGGTTGAAGAATAA	NA	NA	NA	NA
>prophage 4
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	741566	750038	2736723		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|741566_742211_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|742225_742555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|742568_743507_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|743542_744367_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|744359_744707_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|744775_745648_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|745756_746878_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|746931_747534_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|747848_750038_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 5
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	917634	989303	2736723	transposase,tRNA	Staphylococcus_phage(27.27%)	55	NA	NA
WP_002287651.1|917634_919575_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.2	3.3e-114
WP_002287653.1|919798_920647_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302928.1|921041_923195_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_002297218.1|923555_924851_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296740.1|925029_925839_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002295362.1|926131_927568_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.0	3.8e-43
WP_002290958.1|927737_928934_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002295359.1|928995_929181_-	YjzD family protein	NA	NA	NA	NA	NA
WP_002303521.1|929411_932726_+	DNA polymerase III subunit alpha	NA	R4TB75	Streptomyces_phage	33.0	1.8e-149
WP_002304759.1|932893_933856_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_002295355.1|933929_935714_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_002295354.1|935748_936651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295352.1|936836_937406_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_002290970.1|937463_937643_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002298263.1|937812_939234_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D8KPW3	Synechococcus_phage	31.1	4.2e-34
WP_002290973.1|939426_940113_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.2	4.8e-28
WP_002298265.1|940109_941615_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.1	3.9e-06
WP_002317647.1|949113_949989_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002288811.1|950092_950857_+	carbohydrate deacetylase	NA	NA	NA	NA	NA
WP_045136023.1|950873_952286_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002288815.1|953639_954098_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_045136022.1|954389_955691_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002295336.1|955717_955978_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_002288819.1|956976_958212_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_002288821.1|958778_959606_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002288823.1|959878_960649_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_045136021.1|960866_961934_+	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA	NA
WP_010728432.1|961951_962413_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002324626.1|962432_963917_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_045136020.1|963959_964259_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002288832.1|964273_964912_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA	NA
WP_002289048.1|964916_965777_+	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002295327.1|965766_966477_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_002289050.1|966708_967143_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002289065.1|967239_967539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289063.1|967807_968002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|968260_969433_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002295324.1|969561_970323_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_002323245.1|970745_971918_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_000997695.1|973256_974435_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002297404.1|975328_976579_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002288285.1|976988_977288_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_044383392.1|977360_978722_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002288318.1|978743_979004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288278.1|979017_979770_+	aldolase	NA	NA	NA	NA	NA
WP_002294361.1|979863_980469_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002297941.1|980524_981499_-	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_077940815.1|981876_982656_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002294365.1|982722_983994_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002297943.1|984146_985544_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_002289467.1|985624_986065_+	universal stress protein	NA	NA	NA	NA	NA
WP_002289468.1|986211_986538_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289470.1|986538_987288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302217.1|987313_987724_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002323245.1|988130_989303_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
>prophage 6
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	1130533	1139594	2736723		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|1130533_1131829_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|1132008_1132386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1132641_1133370_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1133369_1133624_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002302316.1|1133625_1134297_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002299012.1|1134297_1136520_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.1e-150
WP_002299010.1|1136504_1137944_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	2.4e-53
WP_002299008.1|1137975_1139019_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002302314.1|1139015_1139594_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.4	9.0e-28
>prophage 7
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	1409795	1454455	2736723	transposase	Streptococcus_phage(21.43%)	50	NA	NA
WP_002287525.1|1409795_1410944_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1410960_1411365_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002295138.1|1412481_1412955_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_002295139.1|1412963_1413191_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002295142.1|1413826_1414198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297218.1|1414376_1415672_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002291278.1|1415975_1416218_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002296679.1|1416249_1417152_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002291274.1|1417164_1417353_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002296677.1|1417366_1417930_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002300977.1|1417967_1418861_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
WP_002296674.1|1418938_1419877_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002296672.1|1419910_1420261_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002296671.1|1420293_1421196_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002296670.1|1421188_1422046_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
WP_002296669.1|1422379_1423189_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002296667.1|1423228_1423726_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002321681.1|1424370_1424694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296665.1|1424857_1425112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296663.1|1425181_1425427_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296662.1|1425502_1425868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303842.1|1425928_1426492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297218.1|1427143_1428439_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002293303.1|1428751_1428952_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002296656.1|1429703_1430417_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002296654.1|1430409_1431495_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|1431511_1431955_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|1431988_1432342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|1432453_1432855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|1432891_1433401_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002303107.1|1433422_1434280_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002297404.1|1434689_1435940_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296646.1|1436080_1436914_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303106.1|1436927_1437725_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|1437757_1438042_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|1438038_1439040_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_102993993.1|1439041_1439944_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.0	1.8e-51
WP_002296639.1|1440107_1440956_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|1441601_1441808_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|1442009_1443011_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|1443015_1444929_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002296634.1|1445096_1445603_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002296633.1|1445762_1446203_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296632.1|1446228_1447386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296631.1|1447388_1447745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|1448042_1449017_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_105459812.1|1450237_1451125_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|1451718_1452414_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1452397_1452796_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002297404.1|1453204_1454455_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 8
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	1704577	1766613	2736723	transposase,tRNA	Streptococcus_phage(26.67%)	58	NA	NA
WP_002297218.1|1704577_1705873_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002293930.1|1706252_1706465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065305737.1|1707336_1708509_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.7e-121
WP_002325786.1|1708675_1709062_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002288574.1|1709369_1710716_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002317577.1|1710827_1712177_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288576.1|1712293_1713547_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002347404.1|1713617_1714103_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002326253.1|1714125_1714884_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	6.5e-26
WP_002322842.1|1714899_1716078_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
WP_002326254.1|1716307_1718428_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.3	6.3e-220
WP_002326255.1|1718650_1719376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1719365_1719875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821021.1|1719944_1721393_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	29.3	1.3e-19
WP_002293942.1|1721392_1722109_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288595.1|1722089_1722440_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002288592.1|1722583_1723357_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002323892.1|1724327_1724642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324322.1|1724746_1725925_+|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_002321266.1|1726260_1726500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|1726861_1727122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1727306_1727804_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002323008.1|1727933_1728644_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002297645.1|1728656_1730321_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002297646.1|1730526_1731189_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002325788.1|1731198_1732014_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1732275_1732719_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1732852_1733191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302962.1|1733178_1733556_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000997695.1|1733718_1734897_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002322902.1|1735125_1736319_+	MFS transporter	NA	NA	NA	NA	NA
WP_002288984.1|1736484_1736907_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002303955.1|1737496_1737952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288982.1|1738113_1739286_-	class C sortase	NA	NA	NA	NA	NA
WP_002303963.1|1742416_1744744_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002288970.1|1745586_1745880_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002286913.1|1746137_1746485_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|1746620_1747382_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002346829.1|1747371_1747893_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002297190.1|1748062_1748854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|1748978_1749230_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1749241_1749517_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1749769_1750324_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002297192.1|1750402_1750924_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1750927_1751506_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293709.1|1751617_1753036_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1753056_1753395_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1753354_1753858_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1753988_1754693_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002322835.1|1754689_1756426_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002293701.1|1756528_1759003_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	1.7e-46
WP_002289807.1|1759328_1760219_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002293699.1|1760415_1760898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|1761105_1761471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322761.1|1761561_1761879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086956687.1|1762244_1763406_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002295271.1|1763978_1764953_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002297404.1|1765362_1766613_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 9
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	1979606	2088990	2736723	tail,transposase,holin,plate,portal,head,terminase,tRNA	Enterococcus_phage(28.95%)	116	NA	NA
WP_002303350.1|1979606_1980566_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002295061.1|1980786_1981890_-	L-lactate oxidase	NA	NA	NA	NA	NA
WP_002295059.1|1982111_1982582_-	DUF4809 family protein	NA	NA	NA	NA	NA
WP_000202380.1|1982838_1984158_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302982.1|1984598_1986239_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002302984.1|1986392_1987715_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002295053.1|1987776_1988208_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302985.1|1988271_1989108_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002295049.1|1989297_1989600_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002290886.1|1989625_1990057_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002290885.1|1990053_1990320_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002290883.1|1990573_1991299_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002289867.1|1991851_1992604_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_002289868.1|1992619_1993099_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002296509.1|1993349_1994930_-	ABC transporter	NA	NA	NA	NA	NA
WP_002287741.1|1994922_1995666_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	3.6e-29
WP_002287742.1|1995841_1996618_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002287743.1|1996865_1997702_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_002287744.1|1997712_1998642_-	permease	NA	NA	NA	NA	NA
WP_002287745.1|1998833_1999187_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287746.1|1999260_1999917_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287747.1|2000142_2002077_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.9	1.1e-58
WP_002321414.1|2002162_2003386_-	glucuronyl hydrolase	NA	NA	NA	NA	NA
WP_002321415.1|2003379_2005278_-	DUF2264 domain-containing protein	NA	NA	NA	NA	NA
WP_002287753.1|2005271_2006390_-	glycosyl hydrolase family 88	NA	NA	NA	NA	NA
WP_002302991.1|2006472_2007306_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002287755.1|2007298_2008216_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002287757.1|2008442_2009567_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002296511.1|2009749_2010658_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002323245.1|2010806_2011979_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002287759.1|2012130_2013744_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000222572.1|2014394_2015348_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_138821033.1|2015381_2016611_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|2016612_2017530_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|2017533_2018271_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|2018361_2018889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2019068_2019662_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|2019765_2020251_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|2020403_2020601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|2020695_2022456_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|2022452_2024183_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|2024575_2024788_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|2024789_2026469_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002294067.1|2026722_2026923_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|2027998_2028397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|2028389_2028842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044384583.1|2028828_2029236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025477679.1|2029214_2029517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302755.1|2030511_2031720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302753.1|2031834_2032845_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.8e-61
WP_002349260.1|2032841_2033231_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	69.7	9.0e-40
WP_002302750.1|2033330_2033471_-	XkdX family protein	NA	A0A2H4JD72	uncultured_Caudovirales_phage	54.8	1.1e-08
WP_002332774.1|2033463_2033811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347378.1|2033824_2034319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|2034318_2034768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2034771_2035392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347082.1|2035391_2036300_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|2036312_2039075_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2039071_2039812_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002305859.1|2039801_2042591_-	tape measure protein	NA	D7RWD8	Brochothrix_phage	40.2	8.4e-71
WP_002303297.1|2042832_2043174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303295.1|2043173_2043782_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002298045.1|2043782_2044160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298046.1|2044161_2044557_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002298048.1|2044549_2044921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298050.1|2044920_2045262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311614.1|2045273_2045489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303293.1|2045511_2046402_-	DUF5309 domain-containing protein	NA	NA	NA	NA	NA
WP_002349163.1|2046416_2047118_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_002298058.1|2047166_2047484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298060.1|2047485_2048364_-|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_002303292.1|2048455_2049985_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|2049996_2051412_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|2051404_2052238_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002303289.1|2052842_2053103_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002303288.1|2054052_2054439_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.5	1.6e-28
WP_002303286.1|2054451_2054865_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	5.6e-56
WP_002303285.1|2054941_2055238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303283.1|2055234_2055438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303282.1|2055444_2055675_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	52.1	1.6e-12
WP_002303281.1|2055671_2056055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303280.1|2056051_2056594_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	40.7	3.9e-17
WP_002303279.1|2056590_2057061_-	hypothetical protein	NA	A0A0A7RWK2	Clostridium_phage	33.8	9.6e-12
WP_002305847.1|2057062_2057245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317474.1|2057237_2057555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|2057551_2058403_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_002303278.1|2058417_2059218_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|2059260_2060151_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|2060152_2061094_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|2061326_2061662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299325.1|2061928_2062153_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	2.2e-27
WP_002299038.1|2062461_2062617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|2062688_2062919_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|2063086_2063353_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303265.1|2063552_2064257_+	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303264.1|2064343_2065633_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|2065698_2067051_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
WP_002304462.1|2066945_2067617_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002287951.1|2067671_2068325_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002294071.1|2068314_2069628_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287953.1|2069937_2072583_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
WP_002287954.1|2072975_2073623_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287955.1|2074195_2075407_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_002287956.1|2075422_2076565_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_002287957.1|2076729_2078451_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_002287958.1|2078649_2079210_-	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.1	2.3e-28
WP_002287959.1|2079235_2080075_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002287960.1|2080108_2080942_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_002287961.1|2081173_2082142_+	asparaginase	NA	NA	NA	NA	NA
WP_002287962.1|2082296_2083034_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_138821035.1|2083049_2083883_-	phosphotransferase	NA	NA	NA	NA	NA
WP_002294080.1|2084084_2085413_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	38.1	7.3e-73
WP_002294084.1|2085905_2086055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287965.1|2086502_2087132_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002287966.1|2087245_2087620_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_086956687.1|2087828_2088990_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 10
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	2115407	2181483	2736723	transposase,tRNA,bacteriocin,protease	Enterococcus_phage(17.65%)	57	NA	NA
WP_002287132.1|2115407_2115887_-|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
WP_002287130.1|2116013_2117693_-	ribonuclease J	NA	NA	NA	NA	NA
WP_059355908.1|2118240_2119743_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287128.1|2119755_2120418_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	2.5e-21
WP_002287127.1|2120518_2120722_-	CsbD family protein	NA	NA	NA	NA	NA
WP_002287525.1|2120992_2122141_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|2122157_2122562_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287126.1|2122723_2123908_-	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
WP_002294022.1|2124064_2125804_-	putative basic amino acid antiporter YfcC	NA	NA	NA	NA	NA
WP_002287124.1|2126576_2127191_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002294021.1|2127796_2128174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287122.1|2128473_2129355_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.3	1.3e-73
WP_002287121.1|2129397_2130417_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002287119.1|2131049_2132054_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002287118.1|2132066_2133116_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002287116.1|2133132_2133954_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002287115.1|2133940_2134720_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287114.1|2134736_2135207_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002287112.1|2135218_2135638_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002302892.1|2135718_2138487_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002294014.1|2138686_2138911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294013.1|2139689_2141405_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.7e-50
WP_002289511.1|2141407_2143171_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	1.5e-44
WP_002289509.1|2143210_2143747_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002289508.1|2144069_2144492_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002289507.1|2144700_2145810_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	1.2e-20
WP_002294011.1|2145933_2146563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294004.1|2147013_2147898_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002305490.1|2147890_2148460_-	ribonuclease M5	NA	NA	NA	NA	NA
WP_002294001.1|2148452_2149229_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_002294000.1|2149383_2150706_-	amino acid permease	NA	NA	NA	NA	NA
WP_002293998.1|2150880_2151468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289325.1|2151946_2153956_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
WP_002289337.1|2154223_2154502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289327.1|2154598_2155420_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.8	2.7e-25
WP_138821037.1|2155704_2156715_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	40.8	2.8e-56
WP_002289330.1|2156726_2157680_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.2	3.0e-20
WP_002289332.1|2157669_2158740_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.5e-20
WP_002289334.1|2158745_2159789_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293573.1|2159789_2160731_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293992.1|2160814_2161162_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_002289796.1|2161231_2162893_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002289795.1|2163438_2163987_-	aminoglycoside N-acetyltransferase AAC(6')-Ii	NA	NA	NA	NA	NA
WP_002303623.1|2164539_2165643_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002293986.1|2165835_2166903_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_002289244.1|2167132_2169580_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
WP_002289243.1|2169768_2171205_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.4	1.4e-48
WP_002289242.1|2171523_2172339_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002289241.1|2172356_2172992_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.4e-27
WP_002303625.1|2173010_2173652_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002289239.1|2174131_2174617_+|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002289238.1|2174888_2177054_-	collagen-binding MSCRAMM adhesin Acm	NA	NA	NA	NA	NA
WP_002287525.1|2177566_2178715_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|2178731_2179136_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002289237.1|2179439_2179739_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002289236.1|2180089_2180722_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002303626.1|2180844_2181483_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 11
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	2404877	2489951	2736723	transposase,tRNA,protease	Bacillus_phage(29.41%)	55	NA	NA
WP_002297218.1|2404877_2406173_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294493.1|2406327_2407011_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA	NA
WP_002285996.1|2407012_2407849_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_010729265.1|2407859_2409614_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	2.4e-39
WP_002285994.1|2409889_2410231_-	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
WP_002294492.1|2410298_2412470_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_002285989.1|2412680_2413538_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285988.1|2413608_2414466_-	ROK family protein	NA	NA	NA	NA	NA
WP_002285985.1|2414450_2417153_-	alpha-mannosidase	NA	NA	NA	NA	NA
WP_002294491.1|2417165_2418455_-	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_002302559.1|2418604_2419651_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302560.1|2419652_2421806_+	alpha-1,2-mannosidase	NA	NA	NA	NA	NA
WP_002297218.1|2422071_2423367_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002304851.1|2423800_2425252_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002285976.1|2425248_2426973_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002285975.1|2426965_2427580_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002285974.1|2427924_2429382_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002285972.1|2429422_2430343_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002285971.1|2430354_2431302_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002285969.1|2431780_2432500_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285966.1|2432548_2434195_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000202380.1|2434442_2435762_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002285964.1|2436057_2436648_+	transporter	NA	NA	NA	NA	NA
WP_002294486.1|2436739_2438245_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_002285961.1|2438328_2439681_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002285960.1|2439680_2440199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285954.1|2440214_2440541_-	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002285949.1|2440553_2442533_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002285948.1|2442553_2442868_-	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002285944.1|2443035_2443329_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002321621.1|2443406_2444519_-	FUSC family protein	NA	NA	NA	NA	NA
WP_002297280.1|2444671_2444896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285932.1|2444905_2445085_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_104674935.1|2445278_2445449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099704171.1|2445872_2446613_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002285922.1|2452016_2452778_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_162166410.1|2452877_2454599_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.3e-37
WP_002285918.1|2454613_2456398_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.7e-46
WP_002285917.1|2456778_2458332_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2458679_2461094_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2461520_2463539_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2463908_2464565_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2464564_2465521_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2465520_2466087_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002303072.1|2466291_2468061_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	2.7e-54
WP_002285883.1|2468063_2469776_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
WP_002303070.1|2469890_2470559_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295567.1|2470625_2471414_-	esterase family protein	NA	NA	NA	NA	NA
WP_002295566.1|2471496_2472969_-	MFS transporter	NA	NA	NA	NA	NA
WP_002289731.1|2473098_2474292_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
WP_002297185.1|2474575_2475871_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002296055.1|2484123_2485620_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	8.7e-91
WP_002290055.1|2485730_2486735_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002296053.1|2486735_2487623_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002287418.1|2487839_2489951_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
>prophage 12
NZ_CP039729	Enterococcus faecium strain ZY2 chromosome, complete genome	2736723	2606204	2623100	2736723		Streptococcus_phage(92.86%)	18	NA	NA
WP_002297366.1|2606204_2606519_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2606531_2606906_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002297364.1|2606915_2607251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321809.1|2607333_2608674_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	65.4	2.4e-164
WP_002297358.1|2608751_2609426_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002321810.1|2609658_2610093_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2610093_2610801_+	DNA methylase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2610790_2611081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2611339_2612524_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002297352.1|2612538_2612658_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2613403_2615314_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033658092.1|2615417_2615642_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2615654_2616158_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2616217_2616607_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
WP_002297348.1|2616593_2619041_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_002297347.1|2619045_2621169_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	59.7	1.2e-181
WP_002297346.1|2621165_2622170_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	63.5	5.6e-118
WP_002297345.1|2622188_2623100_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	44.0	2.2e-65
>prophage 1
NZ_CP039730	Enterococcus faecium strain ZY2 plasmid pZY2	97574	18430	51417	97574	protease,transposase	Streptococcus_phage(33.33%)	35	NA	NA
WP_016922336.1|18430_19030_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002350578.1|19588_20068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320853.1|20086_20716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320854.1|20712_22089_-	cell division protein FtsK	NA	G1FGP1	Mycobacterium_phage	42.2	3.8e-48
WP_002320855.1|22168_23431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320856.1|23443_23791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729859.1|23810_24680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320858.1|24911_25718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010730977.1|25805_26606_-	hypothetical protein	NA	U5PTP5	Bacillus_phage	36.3	9.3e-07
WP_002350582.1|26944_28054_-	class C sortase	NA	NA	NA	NA	NA
WP_010730978.1|28043_28901_-	class C sortase	NA	NA	NA	NA	NA
WP_002350584.1|28975_30811_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_016922338.1|30859_33250_-	Cys-Gln thioester bond-forming surface protein	NA	NA	NA	NA	NA
WP_002350491.1|33519_34767_-	C39 family peptidase	NA	NA	NA	NA	NA
WP_002350493.1|35158_35575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010782614.1|35591_36329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016922277.1|36751_37315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350496.1|37301_37829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350497.1|37851_39189_-	CHAP domain-containing protein	NA	Q859L3	Staphylococcus_phage	54.0	8.5e-37
WP_016922278.1|39308_39788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287525.1|39944_41093_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|41109_41514_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_044382017.1|41794_42028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347440.1|42030_42348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646119.1|42883_43564_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
WP_162166413.1|43597_44197_-	D-Ala-D-Ala dipeptidase VanX	NA	NA	NA	NA	NA
WP_063856712.1|44202_45234_-	D-alanine--(R)-lactate ligase VanM	NA	NA	NA	NA	NA
WP_069286758.1|45226_46195_-	D-lactate dehydrogenase VanH	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	34.2	1.6e-45
WP_107309513.1|46332_47196_-	VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_063856748.1|47305_48418_-	VanM-type vancomycin resistance histidine kinase VanS	NA	A0A1B0VMK3	Pseudomonas_phage	28.7	7.6e-15
WP_013646119.1|48800_49481_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
WP_162166412.1|49514_49682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350500.1|49734_50064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350501.1|50191_50431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295743.1|50508_51417_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP039730	Enterococcus faecium strain ZY2 plasmid pZY2	97574	86208	92669	97574	transposase	Streptococcus_phage(50.0%)	13	NA	NA
WP_079158048.1|86208_86613_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.1	1.6e-52
WP_002287525.1|86629_87778_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_025478686.1|88186_88582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350538.1|88582_88960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320784.1|88949_89345_-	antitoxin HicB	NA	A0A0C5AN56	Paenibacillus_phage	39.7	4.1e-16
WP_002320785.1|89411_89597_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0A7RWW9	Clostridium_phage	40.4	7.6e-05
WP_002347534.1|89678_89933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347535.1|89954_90191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347536.1|90206_90491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347537.1|90593_90776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|91008_91689_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_162166415.1|91716_92292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729835.1|92402_92669_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	48.8	8.6e-18
