assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010092585.1_ASM1009258v1	NZ_CP048066	Piscirickettsia salmonis strain Ps-8079A chromosome, complete genome	1	386412-386541	1	CRISPRCasFinder	no		RT,DEDDh,cas3,DinG,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	50	386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495|386458-386495	NZ_CP048067.1_7387-7350|NZ_CP048067.1_186777-186740|NZ_CP048066.1_282172-282135|NZ_CP048066.1_363440-363403|NZ_CP048066.1_484457-484420|NZ_CP048066.1_601373-601336|NZ_CP048066.1_604290-604253|NZ_CP048066.1_712847-712810|NZ_CP048066.1_726982-726945|NZ_CP048066.1_803145-803108|NZ_CP048066.1_843064-843027|NZ_CP048066.1_1035593-1035556|NZ_CP048066.1_1641167-1641130|NZ_CP048066.1_1683116-1683079|NZ_CP048066.1_1751402-1751365|NZ_CP048066.1_1862901-1862864|NZ_CP048066.1_2098353-2098316|NZ_CP048066.1_2215450-2215413|NZ_CP048066.1_2270757-2270720|NZ_CP048066.1_2364304-2364267|NZ_CP048066.1_2732483-2732446|NZ_CP048066.1_3022735-3022698|NZ_CP048066.1_3128730-3128693|NZ_CP048066.1_203285-203322|NZ_CP048066.1_207957-207994|NZ_CP048066.1_251272-251309|NZ_CP048066.1_485747-485784|NZ_CP048066.1_537413-537450|NZ_CP048066.1_793100-793137|NZ_CP048066.1_831139-831176|NZ_CP048066.1_973060-973097|NZ_CP048066.1_1014846-1014883|NZ_CP048066.1_1040239-1040276|NZ_CP048066.1_1204180-1204217|NZ_CP048066.1_1233947-1233984|NZ_CP048066.1_1359122-1359159|NZ_CP048066.1_1393199-1393236|NZ_CP048066.1_1415286-1415323|NZ_CP048066.1_1846250-1846287|NZ_CP048066.1_1890828-1890865|NZ_CP048066.1_1992675-1992712|NZ_CP048066.1_2050487-2050524|NZ_CP048066.1_2074468-2074505|NZ_CP048066.1_2276674-2276711|NZ_CP048066.1_2367529-2367566|NZ_CP048066.1_2824115-2824152|NZ_CP048066.1_3026830-3026867|NZ_CP048066.1_3037681-3037718|NZ_CP048066.1_1638606-1638643|NZ_CP048070.1_15372-15409	NA	1	1	Orphan	RT,DEDDh,cas3,DinG,csa3	NA|290aa|up_9|NZ_CP048066.1_375417_376287_-,NA|243aa|up_8|NZ_CP048066.1_376431_377160_-,NA|73aa|up_7|NZ_CP048066.1_378022_378241_-,NA|65aa|up_4|NZ_CP048066.1_381115_381310_-,NA|105aa|up_0|NZ_CP048066.1_385190_385505_-,NA|97aa|down_0|NZ_CP048066.1_387358_387649_+,NA|233aa|down_1|NZ_CP048066.1_387686_388385_+,NA|99aa|down_2|NZ_CP048066.1_388401_388698_+,NA|263aa|down_3|NZ_CP048066.1_388878_389667_+,NA|128aa|down_4|NZ_CP048066.1_389871_390255_+,NA|192aa|down_5|NZ_CP048066.1_390527_391103_+,NA|262aa|down_9|NZ_CP048066.1_394561_395347_+	NA|290aa|up_9|NZ_CP048066.1_375417_376287_-	NA	NA|243aa|up_8|NZ_CP048066.1_376431_377160_-	NA	NA|73aa|up_7|NZ_CP048066.1_378022_378241_-	NA	NA|85aa|up_6|NZ_CP048066.1_379014_379269_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP048066.1_379991_380978_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP048066.1_381115_381310_-	NA	NA|353aa|up_3|NZ_CP048066.1_381995_383054_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP048066.1_383215_384619_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP048066.1_384669_385245_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP048066.1_385190_385505_-	NA	NA|97aa|down_0|NZ_CP048066.1_387358_387649_+	NA	NA|233aa|down_1|NZ_CP048066.1_387686_388385_+	NA	NA|99aa|down_2|NZ_CP048066.1_388401_388698_+	NA	NA|263aa|down_3|NZ_CP048066.1_388878_389667_+	NA	NA|128aa|down_4|NZ_CP048066.1_389871_390255_+	NA	NA|192aa|down_5|NZ_CP048066.1_390527_391103_+	NA	NA|278aa|down_6|NZ_CP048066.1_391160_391994_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP048066.1_392109_393294_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP048066.1_393312_394257_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP048066.1_394561_395347_+	NA
GCF_010092585.1_ASM1009258v1	NZ_CP048066	Piscirickettsia salmonis strain Ps-8079A chromosome, complete genome	2	2653015-2653135	2	CRISPRCasFinder	no		RT,DEDDh,cas3,DinG,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,DinG,csa3	NA|158aa|up_8|NZ_CP048066.1_2644352_2644826_-,NA|172aa|up_4|NZ_CP048066.1_2650213_2650729_+,NA|88aa|up_3|NZ_CP048066.1_2650961_2651225_+,NA|158aa|up_2|NZ_CP048066.1_2651430_2651904_+,NA|141aa|up_1|NZ_CP048066.1_2652147_2652570_-,NA|47aa|up_0|NZ_CP048066.1_2652602_2652743_+,NA	NA|461aa|up_9|NZ_CP048066.1_2642961_2644344_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP048066.1_2644352_2644826_-	NA	NA|420aa|up_7|NZ_CP048066.1_2644958_2646218_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP048066.1_2646673_2648755_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP048066.1_2649058_2650069_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP048066.1_2650213_2650729_+	NA	NA|88aa|up_3|NZ_CP048066.1_2650961_2651225_+	NA	NA|158aa|up_2|NZ_CP048066.1_2651430_2651904_+	NA	NA|141aa|up_1|NZ_CP048066.1_2652147_2652570_-	NA	NA|47aa|up_0|NZ_CP048066.1_2652602_2652743_+	NA	NA|161aa|down_0|NZ_CP048066.1_2655033_2655516_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_1|NZ_CP048066.1_2656370_2656766_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP048066.1_2656762_2657557_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP048066.1_2657735_2658461_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP048066.1_2658706_2659894_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_5|NZ_CP048066.1_2660470_2661013_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_6|NZ_CP048066.1_2661009_2661696_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_7|NZ_CP048066.1_2661699_2662311_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_8|NZ_CP048066.1_2662357_2663377_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|265aa|down_9|NZ_CP048066.1_2663478_2664273_-	PRK01827, thyA, thymidylate synthase; Reviewed
GCF_010092585.1_ASM1009258v1	NZ_CP048070	Piscirickettsia salmonis strain Ps-8079A plasmid Ps8079A-p4, complete sequence	1	11110-11283	1	CRISPRCasFinder	no			Orphan	ATATTCGTTCCCATATTGTTCGATATATGTTCCTGATTG	39	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,DinG,csa3	NA|59aa|up_9|NZ_CP048070.1_2264_2441_+,NA|106aa|up_7|NZ_CP048070.1_4221_4539_-,NA|144aa|up_4|NZ_CP048070.1_7590_8022_-,NA|78aa|up_3|NZ_CP048070.1_8071_8305_-,NA|64aa|up_0|NZ_CP048070.1_10748_10940_-,NA|52aa|down_0|NZ_CP048070.1_11447_11603_-,NA|143aa|down_5|NZ_CP048070.1_16077_16506_-,NA|380aa|down_8|NZ_CP048070.1_17607_18747_-	NA|59aa|up_9|NZ_CP048070.1_2264_2441_+	NA	NA|80aa|up_8|NZ_CP048070.1_2610_2850_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|106aa|up_7|NZ_CP048070.1_4221_4539_-	NA	NA|80aa|up_6|NZ_CP048070.1_4986_5226_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|354aa|up_5|NZ_CP048070.1_5873_6935_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|144aa|up_4|NZ_CP048070.1_7590_8022_-	NA	NA|78aa|up_3|NZ_CP048070.1_8071_8305_-	NA	NA|63aa|up_2|NZ_CP048070.1_8347_8536_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|325aa|up_1|NZ_CP048070.1_8620_9595_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|64aa|up_0|NZ_CP048070.1_10748_10940_-	NA	NA|52aa|down_0|NZ_CP048070.1_11447_11603_-	NA	NA|271aa|down_1|NZ_CP048070.1_11626_12439_-	pfam13614, AAA_31, AAA domain	NA|192aa|down_2|NZ_CP048070.1_14459_15035_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|down_3|NZ_CP048070.1_14980_15346_-	pfam13384, HTH_23, Homeodomain-like domain	NA|88aa|down_4|NZ_CP048070.1_15566_15830_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|143aa|down_5|NZ_CP048070.1_16077_16506_-	NA	NA|146aa|down_6|NZ_CP048070.1_16507_16945_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|218aa|down_7|NZ_CP048070.1_16944_17598_-	pfam14301, DUF4376, Domain of unknown function (DUF4376)	NA|380aa|down_8|NZ_CP048070.1_17607_18747_-	NA	NA|636aa|down_9|NZ_CP048070.1_18746_20654_-	COG4733, COG4733, Phage-related protein, tail component [Function unknown]
GCF_010092585.1_ASM1009258v1	NZ_CP048067	Piscirickettsia salmonis strain Ps-8079A plasmid Ps8079A-p1, complete sequence	1	111921-112144	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	RT,DEDDh,cas3,DinG,csa3	NA|138aa|up_9|NZ_CP048067.1_100750_101164_-,NA|343aa|up_6|NZ_CP048067.1_103838_104867_+,NA|49aa|up_3|NZ_CP048067.1_107607_107754_+,NA|38aa|down_3|NZ_CP048067.1_117359_117473_+,NA|155aa|down_7|NZ_CP048067.1_122012_122477_-,NA|86aa|down_8|NZ_CP048067.1_123610_123868_+	NA|138aa|up_9|NZ_CP048067.1_100750_101164_-	NA	NA|243aa|up_8|NZ_CP048067.1_101261_101990_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|385aa|up_7|NZ_CP048067.1_102056_103210_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|343aa|up_6|NZ_CP048067.1_103838_104867_+	NA	NA|385aa|up_5|NZ_CP048067.1_105146_106300_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	RT|376aa|up_4|NZ_CP048067.1_106259_107387_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP048067.1_107607_107754_+	NA	NA|272aa|up_2|NZ_CP048067.1_108083_108899_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP048067.1_109144_109735_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP048067.1_110689_111709_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP048067.1_112632_113361_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP048067.1_113564_116141_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP048067.1_116257_117235_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|38aa|down_3|NZ_CP048067.1_117359_117473_+	NA	NA|453aa|down_4|NZ_CP048067.1_117562_118921_+	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|243aa|down_5|NZ_CP048067.1_119104_119833_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|49aa|down_6|NZ_CP048067.1_121503_121650_-	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|155aa|down_7|NZ_CP048067.1_122012_122477_-	NA	NA|86aa|down_8|NZ_CP048067.1_123610_123868_+	NA	NA|326aa|down_9|NZ_CP048067.1_123886_124864_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain
