assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_010092445.1_ASM1009244v1	NZ_CP048031	Shewanella sp. Arc9-LZ chromosome, complete genome	1	1361802-1361894	1	CRISPRCasFinder	no		csa3,cas3,RT,DinG,DEDDh	Orphan	ATTCTGTTGTAAAGAGTCTTCAACG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DinG,DEDDh	NA|64aa|up_1|NZ_CP048031.1_1360393_1360585_+,NA|356aa|down_9|NZ_CP048031.1_1377643_1378711_+	NA|217aa|up_9|NZ_CP048031.1_1351801_1352452_-	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|119aa|up_8|NZ_CP048031.1_1352877_1353234_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|351aa|up_7|NZ_CP048031.1_1353566_1354619_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|242aa|up_6|NZ_CP048031.1_1355143_1355869_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|86aa|up_5|NZ_CP048031.1_1356476_1356734_+	pfam09558, DUF2375, Protein of unknown function (DUF2375)	NA|199aa|up_4|NZ_CP048031.1_1356835_1357432_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|348aa|up_3|NZ_CP048031.1_1357577_1358621_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|442aa|up_2|NZ_CP048031.1_1358858_1360184_+	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|64aa|up_1|NZ_CP048031.1_1360393_1360585_+	NA	NA|115aa|up_0|NZ_CP048031.1_1360870_1361215_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|180aa|down_0|NZ_CP048031.1_1362130_1362670_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|226aa|down_1|NZ_CP048031.1_1362825_1363503_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|295aa|down_2|NZ_CP048031.1_1363677_1364562_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|381aa|down_3|NZ_CP048031.1_1365231_1366373_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|497aa|down_4|NZ_CP048031.1_1366863_1368354_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|1139aa|down_5|NZ_CP048031.1_1369398_1372815_+	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|503aa|down_6|NZ_CP048031.1_1372868_1374377_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|591aa|down_7|NZ_CP048031.1_1374373_1376146_+	cd17256, RMtype1_S_EcoJA65PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|500aa|down_8|NZ_CP048031.1_1376142_1377642_+	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|356aa|down_9|NZ_CP048031.1_1377643_1378711_+	NA
GCF_010092445.1_ASM1009244v1	NZ_CP048031	Shewanella sp. Arc9-LZ chromosome, complete genome	2	1482766-1482849	2	CRISPRCasFinder	no		csa3,cas3,RT,DinG,DEDDh	Orphan	TTTATAGCCTCTAGCCGCGAAGCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DinG,DEDDh	NA,NA	NA|593aa|up_9|NZ_CP048031.1_1468217_1469996_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|404aa|up_8|NZ_CP048031.1_1469998_1471210_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|308aa|up_7|NZ_CP048031.1_1471243_1472167_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|640aa|up_6|NZ_CP048031.1_1472595_1474515_+	cd10794, GH57N_PfGalA_like, N-terminal catalytic domain of alpha-galactosidase; glycoside hydrolase family 57 (GH57)	NA|570aa|up_5|NZ_CP048031.1_1474511_1476221_+	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat	NA|380aa|up_4|NZ_CP048031.1_1476300_1477440_-	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA|334aa|up_3|NZ_CP048031.1_1477436_1478438_-	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA|820aa|up_2|NZ_CP048031.1_1478972_1481432_+	pfam01973, MAF_flag10, Protein of unknown function DUF115	NA|160aa|up_1|NZ_CP048031.1_1481548_1482028_+	pfam11163, DUF2947, Protein of unknown function (DUF2947)	NA|187aa|up_0|NZ_CP048031.1_1482108_1482669_+	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|158aa|down_0|NZ_CP048031.1_1482888_1483362_-	pfam05130, FlgN, FlgN protein	NA|110aa|down_1|NZ_CP048031.1_1483463_1483793_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|236aa|down_2|NZ_CP048031.1_1483867_1484575_-	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|307aa|down_3|NZ_CP048031.1_1484944_1485865_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|278aa|down_4|NZ_CP048031.1_1485937_1486771_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|133aa|down_5|NZ_CP048031.1_1486907_1487306_+	PRK12625, flgB, flagellar basal body rod protein FlgB; Provisional	NA|139aa|down_6|NZ_CP048031.1_1487308_1487725_+	PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional	NA|262aa|down_7|NZ_CP048031.1_1487748_1488534_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|462aa|down_8|NZ_CP048031.1_1488594_1489980_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|248aa|down_9|NZ_CP048031.1_1490262_1491006_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed
GCF_010092445.1_ASM1009244v1	NZ_CP048031	Shewanella sp. Arc9-LZ chromosome, complete genome	3	1605248-1605357	3	CRISPRCasFinder	no		csa3,cas3,RT,DinG,DEDDh	Orphan	AGTTTGATAGGTTGAAAGACGATACCTTTCT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DinG,DEDDh	NA|122aa|up_8|NZ_CP048031.1_1597775_1598141_-,NA	NA|258aa|up_9|NZ_CP048031.1_1597001_1597775_-	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)	NA|122aa|up_8|NZ_CP048031.1_1597775_1598141_-	NA	NA|128aa|up_7|NZ_CP048031.1_1598301_1598685_+	pfam11399, DUF3192, Protein of unknown function (DUF3192)	NA|79aa|up_6|NZ_CP048031.1_1598719_1598956_-	pfam10982, DUF2789, Protein of unknown function (DUF2789)	NA|210aa|up_5|NZ_CP048031.1_1599129_1599759_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|103aa|up_4|NZ_CP048031.1_1599828_1600137_+	pfam06127, DUF962, Protein of unknown function (DUF962)	NA|140aa|up_3|NZ_CP048031.1_1601291_1601711_+	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_2|NZ_CP048031.1_1601961_1602606_+	PRK09483, PRK09483, response regulator; Provisional	NA|611aa|up_1|NZ_CP048031.1_1602650_1604483_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|183aa|up_0|NZ_CP048031.1_1604527_1605076_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|547aa|down_0|NZ_CP048031.1_1605982_1607623_-	TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase	NA|390aa|down_1|NZ_CP048031.1_1607853_1609023_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|453aa|down_2|NZ_CP048031.1_1609043_1610402_-	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|386aa|down_3|NZ_CP048031.1_1610532_1611690_-	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|696aa|down_4|NZ_CP048031.1_1612060_1614148_-	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB	NA|330aa|down_5|NZ_CP048031.1_1614160_1615150_-	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family	NA|654aa|down_6|NZ_CP048031.1_1615247_1617209_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|725aa|down_7|NZ_CP048031.1_1617496_1619671_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|101aa|down_8|NZ_CP048031.1_1620589_1620892_-	pfam10719, ComFB, Late competence development protein ComFB	NA|314aa|down_9|NZ_CP048031.1_1620972_1621914_-	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11
GCF_010092445.1_ASM1009244v1	NZ_CP048031	Shewanella sp. Arc9-LZ chromosome, complete genome	4	3506602-3506822	1	CRT	no		csa3,cas3,RT,DinG,DEDDh	Orphan	TTTATAGCATCTAGCCGCGAAGCGTACTAGCAGCGCAGCG	40	1	1	3506702-3506722	NZ_CP048031.1_3506581-3506601	NA	3	3	Orphan	csa3,cas3,RT,DinG,DEDDh	NA|723aa|up_3|NZ_CP048031.1_3501802_3503971_+,NA|114aa|up_1|NZ_CP048031.1_3504336_3504678_-,NA	NA|575aa|up_9|NZ_CP048031.1_3493209_3494934_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|275aa|up_8|NZ_CP048031.1_3495289_3496114_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|216aa|up_7|NZ_CP048031.1_3496148_3496796_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|503aa|up_6|NZ_CP048031.1_3497329_3498838_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|374aa|up_5|NZ_CP048031.1_3499511_3500633_-	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains	NA|260aa|up_4|NZ_CP048031.1_3500679_3501459_-	pfam04333, MlaA, MlaA lipoprotein	NA|723aa|up_3|NZ_CP048031.1_3501802_3503971_+	NA	NA|104aa|up_2|NZ_CP048031.1_3503982_3504294_+	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]	NA|114aa|up_1|NZ_CP048031.1_3504336_3504678_-	NA	NA|323aa|up_0|NZ_CP048031.1_3505440_3506409_+	pfam11383, DUF3187, Protein of unknown function (DUF3187)	NA|313aa|down_0|NZ_CP048031.1_3506837_3507776_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|1633aa|down_1|NZ_CP048031.1_3507779_3512678_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_2|NZ_CP048031.1_3513493_3514636_-	pfam03022, MRJP, Major royal jelly protein	NA|215aa|down_3|NZ_CP048031.1_3514647_3515292_-	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|189aa|down_4|NZ_CP048031.1_3515419_3515986_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|222aa|down_5|NZ_CP048031.1_3516103_3516769_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|391aa|down_6|NZ_CP048031.1_3516864_3518037_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|325aa|down_7|NZ_CP048031.1_3518089_3519064_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|824aa|down_8|NZ_CP048031.1_3519194_3521666_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|696aa|down_9|NZ_CP048031.1_3521927_3524015_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
