assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	1	626644-626761	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|55aa|down_0|NZ_CP041435.1_626834_626999_-	NA|115aa|up_9|NZ_CP041435.1_614365_614710_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP041435.1_614898_615837_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP041435.1_615935_616925_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP041435.1_616946_618278_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP041435.1_618303_619512_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP041435.1_619545_621840_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP041435.1_621853_622243_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP041435.1_622314_623679_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP041435.1_623953_625285_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP041435.1_625312_626623_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP041435.1_626834_626999_-	NA	NA|234aa|down_1|NZ_CP041435.1_627021_627723_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP041435.1_627827_628724_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP041435.1_628774_629131_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP041435.1_629372_629738_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP041435.1_630030_631017_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP041435.1_631086_631569_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP041435.1_631664_631964_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP041435.1_631953_632358_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP041435.1_632360_632666_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	2	1082142-1083207	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|121aa|up_3|NZ_CP041435.1_1079038_1079401_-,NA	NA|745aa|up_9|NZ_CP041435.1_1071974_1074209_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP041435.1_1074286_1074535_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP041435.1_1074534_1074870_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP041435.1_1074940_1075732_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP041435.1_1075959_1077597_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP041435.1_1077684_1078983_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP041435.1_1079038_1079401_-	NA	NA|302aa|up_2|NZ_CP041435.1_1079436_1080342_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP041435.1_1080355_1080958_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP041435.1_1081130_1081802_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|122aa|down_0|NZ_CP041435.1_1084439_1084805_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP041435.1_1085120_1086920_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP041435.1_1086919_1088632_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|NZ_CP041435.1_1088705_1089440_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_4|NZ_CP041435.1_1089704_1089857_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_5|NZ_CP041435.1_1090050_1092750_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|NZ_CP041435.1_1092847_1094410_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|178aa|down_7|NZ_CP041435.1_1094406_1094940_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|down_8|NZ_CP041435.1_1094954_1096028_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|NZ_CP041435.1_1096038_1096785_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	3	1098724-1099363	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP041435.1_1088705_1089440_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP041435.1_1089704_1089857_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP041435.1_1090050_1092750_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP041435.1_1092847_1094410_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|178aa|up_5|NZ_CP041435.1_1094406_1094940_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_4|NZ_CP041435.1_1094954_1096028_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP041435.1_1096038_1096785_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP041435.1_1096766_1097417_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP041435.1_1097413_1098337_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041435.1_1098333_1098627_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041435.1_1099445_1100483_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041435.1_1100734_1101643_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041435.1_1101644_1103072_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041435.1_1103071_1103677_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041435.1_1103726_1104050_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041435.1_1104243_1104555_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041435.1_1104573_1105284_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041435.1_1105283_1105763_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041435.1_1105759_1106809_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041435.1_1106789_1107551_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	4	2255222-2255345	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP041435.1_2264241_2264331_+	NA|471aa|up_9|NZ_CP041435.1_2244675_2246088_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041435.1_2246644_2246854_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041435.1_2247309_2247936_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041435.1_2247956_2250059_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP041435.1_2250071_2250710_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041435.1_2250773_2251442_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041435.1_2251438_2252224_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041435.1_2252227_2253040_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041435.1_2253051_2254656_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041435.1_2254781_2255087_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041435.1_2255659_2256916_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041435.1_2256956_2258330_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041435.1_2258544_2259186_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041435.1_2259225_2260374_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041435.1_2260664_2261876_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041435.1_2261988_2262921_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041435.1_2262917_2263943_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041435.1_2264241_2264331_+	NA	NA|390aa|down_8|NZ_CP041435.1_2264496_2265666_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041435.1_2265811_2266393_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	5	2914836-2914927	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP041435.1_2904086_2904296_-,NA	NA|70aa|up_9|NZ_CP041435.1_2904086_2904296_-	NA	NA|1321aa|up_8|NZ_CP041435.1_2904350_2908313_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP041435.1_2908352_2908991_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP041435.1_2909278_2910370_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041435.1_2910369_2911062_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041435.1_2911073_2911460_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041435.1_2911467_2912268_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041435.1_2912277_2912868_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041435.1_2912878_2913373_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041435.1_2913393_2914722_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041435.1_2915349_2915946_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041435.1_2915966_2916194_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041435.1_2916231_2917473_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|117aa|down_3|NZ_CP041435.1_2917765_2918116_-	PRK09784, PRK09784, YccE family protein	NA|273aa|down_4|NZ_CP041435.1_2918131_2918950_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_5|NZ_CP041435.1_2919282_2920203_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_6|NZ_CP041435.1_2920202_2920508_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_7|NZ_CP041435.1_2920600_2921200_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP041435.1_2921196_2923743_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP041435.1_2923742_2924915_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
GCF_009951745.1_ASM995174v1	NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	6	3518787-3518900	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|34aa|up_7|NZ_CP041435.1_3513101_3513203_-,NA|50aa|up_3|NZ_CP041435.1_3516726_3516876_-,NA|101aa|up_1|NZ_CP041435.1_3517323_3517626_-,NA|94aa|down_9|NZ_CP041435.1_3524329_3524611_+	NA|57aa|up_9|NZ_CP041435.1_3512479_3512650_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_8|NZ_CP041435.1_3512649_3513105_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_7|NZ_CP041435.1_3513101_3513203_-	NA	NA|266aa|up_6|NZ_CP041435.1_3513319_3514117_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|184aa|up_5|NZ_CP041435.1_3514126_3514678_-	PRK09818, PRK09818, kinase inhibitor	NA|509aa|up_4|NZ_CP041435.1_3515142_3516669_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|up_3|NZ_CP041435.1_3516726_3516876_-	NA	NA|111aa|up_2|NZ_CP041435.1_3516923_3517256_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP041435.1_3517323_3517626_-	NA	NA|234aa|up_0|NZ_CP041435.1_3517622_3518324_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP041435.1_3519336_3519876_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP041435.1_3519944_3520175_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|252aa|down_2|NZ_CP041435.1_3520213_3520969_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP041435.1_3521564_3521771_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP041435.1_3521846_3522143_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP041435.1_3522148_3522934_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP041435.1_3522930_3523611_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|54aa|down_7|NZ_CP041435.1_3523607_3523769_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|186aa|down_8|NZ_CP041435.1_3523761_3524319_+	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam)	NA|94aa|down_9|NZ_CP041435.1_3524329_3524611_+	NA
