assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009951245.1_ASM995124v1	NZ_CP041433	Escherichia coli strain STEC313 chromosome, complete genome	1	635546-635663	1	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	NA,NA|55aa|down_0|NZ_CP041433.1_635736_635901_-	NA|115aa|up_9|NZ_CP041433.1_623267_623612_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP041433.1_623800_624739_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP041433.1_624837_625827_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP041433.1_625848_627180_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP041433.1_627205_628414_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP041433.1_628447_630742_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP041433.1_630755_631145_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP041433.1_631216_632581_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP041433.1_632855_634187_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP041433.1_634214_635525_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP041433.1_635736_635901_-	NA	NA|234aa|down_1|NZ_CP041433.1_635923_636625_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP041433.1_636729_637626_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP041433.1_637676_638033_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP041433.1_638274_638640_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP041433.1_638932_639919_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP041433.1_639988_640471_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP041433.1_640566_640866_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP041433.1_640855_641260_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP041433.1_641262_641568_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_009951245.1_ASM995124v1	NZ_CP041433	Escherichia coli strain STEC313 chromosome, complete genome	2	664692-664833	2	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	Orphan	GGATTGCACATGTAGGGCGGATAAGGCGTTCACGCCGCATCC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	NA|101aa|up_7|NZ_CP041433.1_656564_656867_-,NA|357aa|down_1|NZ_CP041433.1_667216_668287_-	NA|184aa|up_9|NZ_CP041433.1_654559_655111_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP041433.1_655115_656360_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|101aa|up_7|NZ_CP041433.1_656564_656867_-	NA	NA|322aa|up_6|NZ_CP041433.1_656975_657941_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_5|NZ_CP041433.1_658223_659210_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|228aa|up_4|NZ_CP041433.1_659288_659972_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_3|NZ_CP041433.1_660048_660552_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_2|NZ_CP041433.1_660636_661773_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|139aa|up_1|NZ_CP041433.1_662043_662460_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP041433.1_662504_664523_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP041433.1_664848_667200_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP041433.1_667216_668287_-	NA	NA|478aa|down_2|NZ_CP041433.1_668420_669854_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP041433.1_669916_670366_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP041433.1_670362_673455_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP041433.1_673638_674622_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP041433.1_674840_675173_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP041433.1_675214_676705_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP041433.1_677011_678532_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP041433.1_678685_679309_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_009951245.1_ASM995124v1	NZ_CP041433	Escherichia coli strain STEC313 chromosome, complete genome	3	1091984-1092683	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	NA|47aa|up_1|NZ_CP041433.1_1090693_1090834_-,NA	NA|919aa|up_9|NZ_CP041433.1_1078577_1081334_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP041433.1_1081390_1082692_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP041433.1_1082739_1084974_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP041433.1_1085051_1085300_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP041433.1_1085299_1085635_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP041433.1_1085705_1086497_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP041433.1_1086724_1088362_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP041433.1_1088449_1089748_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP041433.1_1090693_1090834_-	NA	NA|224aa|up_0|NZ_CP041433.1_1090972_1091644_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041433.1_1093321_1094800_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041433.1_1094826_1096104_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041433.1_1096422_1097208_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041433.1_1097277_1098732_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP041433.1_1098753_1100163_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041433.1_1100140_1100920_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP041433.1_1100883_1101777_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041433.1_1101924_1102500_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041433.1_1102516_1102777_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041433.1_1102767_1104039_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009951245.1_ASM995124v1	NZ_CP041433	Escherichia coli strain STEC313 chromosome, complete genome	4	1118384-1118717	2,2,4	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	4,5,4	5	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	NA,NA	NA|245aa|up_9|NZ_CP041433.1_1108382_1109117_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP041433.1_1109381_1109534_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP041433.1_1109728_1112428_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP041433.1_1112525_1114088_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP041433.1_1114084_1114621_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP041433.1_1114632_1115688_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP041433.1_1115698_1116445_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP041433.1_1116426_1117077_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP041433.1_1117073_1117997_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041433.1_1117993_1118287_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041433.1_1118737_1119775_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041433.1_1120026_1120935_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041433.1_1120936_1122364_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041433.1_1122363_1122969_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041433.1_1123018_1123342_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041433.1_1123535_1123847_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041433.1_1123865_1124576_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041433.1_1124575_1125055_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041433.1_1125051_1126101_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041433.1_1126081_1126843_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009951245.1_ASM995124v1	NZ_CP041433	Escherichia coli strain STEC313 chromosome, complete genome	5	3435609-3435754	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,WYL,DinG	NA,NA|95aa|down_4|NZ_CP041433.1_3439053_3439338_-,NA|192aa|down_5|NZ_CP041433.1_3439422_3439998_-,NA|252aa|down_6|NZ_CP041433.1_3440008_3440764_-,NA|94aa|down_9|NZ_CP041433.1_3441489_3441771_-	NA|50aa|up_9|NZ_CP041433.1_3424589_3424739_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP041433.1_3424904_3425678_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP041433.1_3425677_3426367_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP041433.1_3426369_3427428_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP041433.1_3427428_3428247_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP041433.1_3428401_3429397_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP041433.1_3429437_3430391_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP041433.1_3430574_3431627_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP041433.1_3431702_3433136_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP041433.1_3433318_3435580_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP041433.1_3435813_3437097_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NZ_CP041433.1_3437231_3438302_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NZ_CP041433.1_3438279_3438498_-	pfam07825, Exc, Excisionase-like protein	NA|51aa|down_3|NZ_CP041433.1_3438923_3439076_-	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit	NA|95aa|down_4|NZ_CP041433.1_3439053_3439338_-	NA	NA|192aa|down_5|NZ_CP041433.1_3439422_3439998_-	NA	NA|252aa|down_6|NZ_CP041433.1_3440008_3440764_-	NA	NA|136aa|down_7|NZ_CP041433.1_3440765_3441173_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|74aa|down_8|NZ_CP041433.1_3441169_3441391_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_9|NZ_CP041433.1_3441489_3441771_-	NA
