assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009949705.1_ASM994970v1	NZ_CP041422	Escherichia coli strain STEC409 chromosome, complete genome	1	973445-973961	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	NA|47aa|up_1|NZ_CP041422.1_972154_972295_-,NA	NA|434aa|up_9|NZ_CP041422.1_962851_964153_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041422.1_964200_966435_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041422.1_966512_966761_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041422.1_966760_967096_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041422.1_967166_967958_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041422.1_968185_969823_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041422.1_969910_971209_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041422.1_971268_972141_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041422.1_972154_972295_-	NA	NA|224aa|up_0|NZ_CP041422.1_972433_973105_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041422.1_974599_976078_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041422.1_976104_977382_-	cd06174, MFS, Major Facilitator Superfamily	NA|100aa|down_2|NZ_CP041422.1_977650_977950_+	pfam01527, HTH_Tnp_1, Transposase	NA|289aa|down_3|NZ_CP041422.1_977946_978813_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|262aa|down_4|NZ_CP041422.1_978961_979747_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_5|NZ_CP041422.1_979816_981271_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_6|NZ_CP041422.1_981292_982702_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_7|NZ_CP041422.1_982679_983459_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_8|NZ_CP041422.1_983422_984316_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_9|NZ_CP041422.1_984463_985039_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
GCF_009949705.1_ASM994970v1	NZ_CP041422	Escherichia coli strain STEC409 chromosome, complete genome	2	1002270-1002424	2,2	PILER-CR,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Type I-E	GTGTGTTCCCCGCGCCAGCGGGGATAAACCGGG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	33,29	0	0	NA	NA	I-E:I-E	2,2	2	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	NA,NA	NA|51aa|up_9|NZ_CP041422.1_991920_992073_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP041422.1_992265_993378_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP041422.1_993616_996316_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP041422.1_996413_997976_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP041422.1_997972_998509_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP041422.1_998520_999576_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP041422.1_999586_1000333_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP041422.1_1000314_1000965_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP041422.1_1000961_1001885_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041422.1_1001881_1002175_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041422.1_1002503_1003541_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041422.1_1003792_1004701_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041422.1_1004702_1006130_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041422.1_1006129_1006735_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041422.1_1006784_1007108_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041422.1_1007301_1007613_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041422.1_1007631_1008342_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041422.1_1008341_1008821_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041422.1_1008817_1009867_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041422.1_1009847_1010609_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009949705.1_ASM994970v1	NZ_CP041422	Escherichia coli strain STEC409 chromosome, complete genome	3	1624646-1624775	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	ATGCCTACAGGCCTGAACCGTAGGTCGGATAAGGCG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	NA|272aa|up_8|NZ_CP041422.1_1614152_1614968_+,NA|82aa|up_7|NZ_CP041422.1_1615380_1615626_+,NA	NA|350aa|up_9|NZ_CP041422.1_1612860_1613910_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|272aa|up_8|NZ_CP041422.1_1614152_1614968_+	NA	NA|82aa|up_7|NZ_CP041422.1_1615380_1615626_+	NA	NA|224aa|up_6|NZ_CP041422.1_1615642_1616314_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|92aa|up_5|NZ_CP041422.1_1616460_1616736_+	PRK09929, PRK09929, hypothetical protein; Provisional	NA|529aa|up_4|NZ_CP041422.1_1616833_1618420_-	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|297aa|up_3|NZ_CP041422.1_1618658_1619549_+	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|390aa|up_2|NZ_CP041422.1_1619988_1621158_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|484aa|up_1|NZ_CP041422.1_1621191_1622643_+	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|629aa|up_0|NZ_CP041422.1_1622682_1624569_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|420aa|down_0|NZ_CP041422.1_1624993_1626253_+	PRK11017, codB, cytosine permease; Provisional	NA|428aa|down_1|NZ_CP041422.1_1626242_1627526_+	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|300aa|down_2|NZ_CP041422.1_1627862_1628762_-	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|220aa|down_3|NZ_CP041422.1_1628870_1629530_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|157aa|down_4|NZ_CP041422.1_1629560_1630031_+	COG1513, CynS, Cyanate lyase [Inorganic ion transport and metabolism]	NA|394aa|down_5|NZ_CP041422.1_1630036_1631218_+	PRK09705, cynX, putative cyanate transporter; Provisional	NA|204aa|down_6|NZ_CP041422.1_1631320_1631932_-	PRK09527, lacA, galactoside O-acetyltransferase; Reviewed	NA|418aa|down_7|NZ_CP041422.1_1631997_1633251_-	PRK09528, lacY, galactoside permease; Reviewed	NA|1025aa|down_8|NZ_CP041422.1_1633302_1636377_-	PRK09525, lacZ, beta-galactosidase	NA|361aa|down_9|NZ_CP041422.1_1636499_1637582_-	PRK09526, lacI, lac repressor; Reviewed
GCF_009949705.1_ASM994970v1	NZ_CP041422	Escherichia coli strain STEC409 chromosome, complete genome	4	2162328-2162532	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	NA,NA	NA|551aa|up_9|NZ_CP041422.1_2148737_2150390_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP041422.1_2150533_2151433_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP041422.1_2151927_2152623_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP041422.1_2153048_2154707_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP041422.1_2154703_2155660_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP041422.1_2155810_2156926_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP041422.1_2156922_2158869_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP041422.1_2158941_2159166_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP041422.1_2159488_2159809_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP041422.1_2159839_2162116_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP041422.1_2162916_2163135_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP041422.1_2163419_2164124_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP041422.1_2164165_2165887_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP041422.1_2165887_2167654_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP041422.1_2167776_2168742_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP041422.1_2169286_2169781_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_CP041422.1_2169915_2173905_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP041422.1_2174059_2174671_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP041422.1_2174681_2176025_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP041422.1_2176115_2177408_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_009949705.1_ASM994970v1	NZ_CP041422	Escherichia coli strain STEC409 chromosome, complete genome	5	3542246-3542372	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL	NA,NA	NA|395aa|up_9|NZ_CP041422.1_3521153_3522338_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP041422.1_3522411_3523188_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP041422.1_3523192_3524842_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP041422.1_3524842_3529237_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP041422.1_3529380_3530004_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP041422.1_3530000_3531689_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP041422.1_3531837_3534465_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP041422.1_3534611_3535334_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP041422.1_3535461_3539214_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP041422.1_3539909_3542195_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP041422.1_3542428_3543559_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP041422.1_3543558_3543813_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP041422.1_3543866_3544517_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP041422.1_3544979_3546056_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP041422.1_3546060_3547419_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP041422.1_3547691_3549320_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP041422.1_3549309_3550569_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP041422.1_3550565_3551756_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP041422.1_3551948_3552848_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP041422.1_3552860_3553046_+	PRK09956, PRK09956, ISNCY family transposase
