assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	1	62590-62872	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	62620-62645|62620-62645|62620-62645|62620-62645|62620-62645|62734-62759	NZ_CP047809.1_2788869-2788844|NZ_CP047809.1_62564-62589|NZ_CP047809.1_1893191-1893166|NZ_CP047809.1_293748-293773|NZ_CP047809.1_2751836-2751861|NZ_CP047809.1_1120656-1120631	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP047809.1_51478_52975_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047809.1_52967_53297_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047809.1_53308_53737_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047809.1_53729_56135_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047809.1_56265_56649_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047809.1_56712_57306_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047809.1_57721_58099_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047809.1_58460_59588_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047809.1_59895_61086_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047809.1_61194_62439_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047809.1_62941_63871_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047809.1_64112_65492_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047809.1_65481_66687_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047809.1_67037_68369_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047809.1_68693_69269_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047809.1_69273_69798_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047809.1_69813_70389_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047809.1_70548_74025_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047809.1_74025_77679_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047809.1_77844_78747_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2	293578-293764	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	27	293597-293633|293597-293633|293597-293633|293597-293633|293597-293633|293597-293633|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293653-293689|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745|293709-293745	NZ_CP047809.1_948731-948767|NZ_CP047809.1_1644097-1644133|NZ_CP047809.1_770051-770015|NZ_CP047809.1_1131386-1131350|NZ_CP047809.1_1893229-1893193|NZ_CP047809.1_2847205-2847169|NZ_CP047809.1_193362-193326|NZ_CP047809.1_501865-501901|NZ_CP047809.1_1120639-1120603|NZ_CP047809.1_590365-590329|NZ_CP047809.1_770109-770073|NZ_CP047809.1_1728154-1728118|NZ_CP047809.1_289685-289721|NZ_CP047809.1_293765-293801|NZ_CP047809.1_1120580-1120544|NZ_CP047809.1_2788852-2788816|NZ_CP047809.1_501923-501959|NZ_CP047809.1_2066939-2066975|NZ_CP047809.1_2625526-2625562|NZ_CP047809.1_2742350-2742386|NZ_CP047809.1_590307-590271|NZ_CP047809.1_1122096-1122060|NZ_CP047809.1_2741416-2741380|NZ_CP047809.1_2788908-2788872|NZ_CP047809.1_219263-219227|NZ_CP047809.1_1618849-1618813|NZ_CP047809.1_289741-289777	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|31aa|up_9|NZ_CP047809.1_286401_286494_-,NA|169aa|up_7|NZ_CP047809.1_287526_288033_+,NA|62aa|up_4|NZ_CP047809.1_289945_290131_-,NA|78aa|up_3|NZ_CP047809.1_290752_290986_-,NA|49aa|up_1|NZ_CP047809.1_293094_293241_+,NA|75aa|up_0|NZ_CP047809.1_293197_293422_+,NA|76aa|down_6|NZ_CP047809.1_300777_301005_+	NA|31aa|up_9|NZ_CP047809.1_286401_286494_-	NA	NA|134aa|up_8|NZ_CP047809.1_286453_286855_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP047809.1_287526_288033_+	NA	NA|166aa|up_6|NZ_CP047809.1_288291_288789_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP047809.1_288942_289293_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP047809.1_289945_290131_-	NA	NA|78aa|up_3|NZ_CP047809.1_290752_290986_-	NA	NA|320aa|up_2|NZ_CP047809.1_291462_292422_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP047809.1_293094_293241_+	NA	NA|75aa|up_0|NZ_CP047809.1_293197_293422_+	NA	NA|239aa|down_0|NZ_CP047809.1_293978_294695_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP047809.1_294802_295528_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP047809.1_295622_296348_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP047809.1_296785_297787_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP047809.1_297809_298742_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NZ_CP047809.1_298979_300470_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP047809.1_300777_301005_+	NA	NA|316aa|down_7|NZ_CP047809.1_301309_302257_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP047809.1_302505_302694_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP047809.1_303605_303740_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	3	948771-948997	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP047809.1_939326_939923_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP047809.1_939951_940809_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP047809.1_940908_941220_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP047809.1_941284_942361_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP047809.1_942447_942759_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP047809.1_942883_943726_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP047809.1_944195_944840_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP047809.1_944854_945646_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP047809.1_946195_947044_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP047809.1_947047_948457_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP047809.1_949376_949799_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP047809.1_949815_950511_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP047809.1_950507_952169_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP047809.1_952575_953844_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP047809.1_953960_960521_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP047809.1_960846_961158_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|805aa|down_6|NZ_CP047809.1_961179_963594_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP047809.1_963884_965066_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP047809.1_965175_966129_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP047809.1_966125_966689_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	4	1201438-1201526	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|95aa|up_8|NZ_CP047809.1_1196865_1197150_-,NA|121aa|up_7|NZ_CP047809.1_1197151_1197514_-,NA|70aa|up_3|NZ_CP047809.1_1200534_1200744_-,NA|49aa|up_2|NZ_CP047809.1_1200736_1200883_-,NA	NA|214aa|up_9|NZ_CP047809.1_1196227_1196869_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|95aa|up_8|NZ_CP047809.1_1196865_1197150_-	NA	NA|121aa|up_7|NZ_CP047809.1_1197151_1197514_-	NA	NA|490aa|up_6|NZ_CP047809.1_1197792_1199262_-	pfam05272, VirE, Virulence-associated protein E	NA|290aa|up_5|NZ_CP047809.1_1199278_1200148_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_4|NZ_CP047809.1_1200214_1200532_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NZ_CP047809.1_1200534_1200744_-	NA	NA|49aa|up_2|NZ_CP047809.1_1200736_1200883_-	NA	NA|106aa|up_1|NZ_CP047809.1_1200879_1201197_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP047809.1_1201201_1201420_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP047809.1_1201592_1202267_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP047809.1_1202280_1203453_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP047809.1_1203521_1205138_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP047809.1_1205213_1205498_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP047809.1_1205672_1206416_+	pfam02517, Abi, CAAX protease self-immunity	NA|396aa|down_5|NZ_CP047809.1_1206440_1207628_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|209aa|down_6|NZ_CP047809.1_1207824_1208451_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP047809.1_1208811_1209597_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP047809.1_1210193_1210328_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_9|NZ_CP047809.1_1210563_1211133_+	smart00793, AgrB, Accessory gene regulator B
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	5	1328382-1328532	3	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP047809.1_1323253_1323484_-,NA|364aa|up_0|NZ_CP047809.1_1327272_1328364_+,NA|35aa|down_0|NZ_CP047809.1_1328863_1328968_-,NA|31aa|down_2|NZ_CP047809.1_1331079_1331172_+	NA|237aa|up_9|NZ_CP047809.1_1318863_1319574_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP047809.1_1319694_1320138_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP047809.1_1320337_1320751_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP047809.1_1321208_1322582_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP047809.1_1323253_1323484_-	NA	NA|313aa|up_4|NZ_CP047809.1_1323514_1324453_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP047809.1_1324887_1325553_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP047809.1_1325704_1326025_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP047809.1_1326026_1327007_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP047809.1_1327272_1328364_+	NA	NA|35aa|down_0|NZ_CP047809.1_1328863_1328968_-	NA	NA|379aa|down_1|NZ_CP047809.1_1329654_1330791_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP047809.1_1331079_1331172_+	NA	NA|286aa|down_3|NZ_CP047809.1_1331876_1332734_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP047809.1_1332801_1333584_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP047809.1_1333815_1335621_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP047809.1_1336301_1337840_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP047809.1_1337874_1340007_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP047809.1_1340018_1340453_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP047809.1_1340452_1341559_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	6	2373307-2373407	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP047809.1_2364879_2365089_-,NA|128aa|up_7|NZ_CP047809.1_2365913_2366297_-,NA|98aa|up_5|NZ_CP047809.1_2367250_2367544_-,NA|34aa|up_0|NZ_CP047809.1_2372531_2372633_+,NA|221aa|down_1|NZ_CP047809.1_2374497_2375160_-,NA|179aa|down_7|NZ_CP047809.1_2381251_2381788_-	NA|70aa|up_9|NZ_CP047809.1_2364879_2365089_-	NA	NA|194aa|up_8|NZ_CP047809.1_2365266_2365848_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP047809.1_2365913_2366297_-	NA	NA|209aa|up_6|NZ_CP047809.1_2366551_2367178_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP047809.1_2367250_2367544_-	NA	NA|508aa|up_4|NZ_CP047809.1_2367622_2369146_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP047809.1_2369161_2369731_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP047809.1_2370222_2370978_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP047809.1_2371058_2372447_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP047809.1_2372531_2372633_+	NA	NA|319aa|down_0|NZ_CP047809.1_2373423_2374380_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP047809.1_2374497_2375160_-	NA	NA|136aa|down_2|NZ_CP047809.1_2375302_2375710_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP047809.1_2376222_2376801_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP047809.1_2376800_2378069_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP047809.1_2378106_2379573_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP047809.1_2379597_2381139_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP047809.1_2381251_2381788_-	NA	NA|235aa|down_8|NZ_CP047809.1_2382180_2382885_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP047809.1_2383283_2383556_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	7	2626488-2626580	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP047809.1_2622971_2623079_+,NA|169aa|down_4|NZ_CP047809.1_2630327_2630834_+,NA|239aa|down_5|NZ_CP047809.1_2630995_2631712_+	NA|313aa|up_9|NZ_CP047809.1_2617173_2618112_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP047809.1_2618322_2618859_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP047809.1_2619027_2619504_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP047809.1_2619543_2620839_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP047809.1_2620866_2621388_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP047809.1_2621886_2622897_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP047809.1_2622971_2623079_+	NA	NA|128aa|up_2|NZ_CP047809.1_2623204_2623588_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP047809.1_2623584_2625246_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP047809.1_2625634_2626270_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP047809.1_2626708_2627536_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP047809.1_2627683_2628634_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP047809.1_2628688_2629408_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP047809.1_2629391_2630192_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP047809.1_2630327_2630834_+	NA	NA|239aa|down_5|NZ_CP047809.1_2630995_2631712_+	NA	NA|263aa|down_6|NZ_CP047809.1_2631880_2632669_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP047809.1_2632919_2633294_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP047809.1_2634241_2635171_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP047809.1_2635365_2635590_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	8	2742362-2742444	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP047809.1_2728962_2729169_+,NA|34aa|down_1|NZ_CP047809.1_2743900_2744002_+,NA|52aa|down_8|NZ_CP047809.1_2752183_2752339_+	NA|69aa|up_9|NZ_CP047809.1_2728962_2729169_+	NA	NA|237aa|up_8|NZ_CP047809.1_2729256_2729967_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP047809.1_2729950_2730955_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP047809.1_2731428_2733369_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP047809.1_2733639_2735523_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP047809.1_2735534_2737316_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP047809.1_2737537_2738515_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP047809.1_2738507_2740022_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP047809.1_2740261_2741320_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP047809.1_2741670_2742213_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP047809.1_2742892_2743810_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP047809.1_2743900_2744002_+	NA	NA|502aa|down_2|NZ_CP047809.1_2744080_2745586_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP047809.1_2745926_2746427_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP047809.1_2746446_2747313_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP047809.1_2748114_2748513_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP047809.1_2748475_2750581_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP047809.1_2750698_2751670_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP047809.1_2752183_2752339_+	NA	NA|324aa|down_9|NZ_CP047809.1_2752377_2753349_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	9	2783416-2783496	7	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	8	2783442-2783470|2783442-2783470|2783442-2783470|2783442-2783470|2783442-2783470|2783442-2783470|2783442-2783470|2783442-2783470	NZ_CP047809.1_1893198-1893226|NZ_CP047809.1_948762-948734|NZ_CP047809.1_2334855-2334827|NZ_CP047809.1_82259-82287|NZ_CP047809.1_770020-770048|NZ_CP047809.1_1131355-1131383|NZ_CP047809.1_2847174-2847202|NZ_CP047809.1_1644128-1644100	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP047809.1_2774329_2774434_+,NA|36aa|up_5|NZ_CP047809.1_2775866_2775974_+,NA	NA|191aa|up_9|NZ_CP047809.1_2770770_2771343_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP047809.1_2771756_2774288_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP047809.1_2774329_2774434_+	NA	NA|370aa|up_6|NZ_CP047809.1_2774602_2775713_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP047809.1_2775866_2775974_+	NA	NA|280aa|up_4|NZ_CP047809.1_2776121_2776961_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP047809.1_2777134_2777785_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP047809.1_2777781_2778018_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP047809.1_2778286_2780272_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP047809.1_2780279_2783126_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP047809.1_2783732_2784665_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP047809.1_2784670_2785510_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP047809.1_2785517_2786003_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP047809.1_2786010_2787450_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP047809.1_2787516_2788452_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP047809.1_2789275_2790187_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP047809.1_2790183_2791179_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP047809.1_2791288_2792233_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP047809.1_2792805_2793393_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP047809.1_2793635_2794538_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009937785.1_ASM993778v1	NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	10	2847108-2847189	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	2847132-2847165|2847132-2847165	NZ_CP047809.1_501939-501906|NZ_CP047809.1_590291-590324	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP047809.1_2846010_2846124_+,NA	NA|206aa|up_9|NZ_CP047809.1_2840865_2841483_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP047809.1_2841637_2842132_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP047809.1_2842530_2842953_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP047809.1_2843100_2843817_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP047809.1_2843899_2844439_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP047809.1_2844588_2844909_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP047809.1_2845052_2845409_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP047809.1_2845566_2845947_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP047809.1_2846010_2846124_+	NA	NA|293aa|up_0|NZ_CP047809.1_2846125_2847004_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047809.1_2847745_2848132_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047809.1_2848124_2848421_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047809.1_2848670_2849696_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047809.1_2849688_2850384_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047809.1_2850401_2851223_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP047809.1_2851576_2851771_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP047809.1_2852003_2852855_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP047809.1_2853182_2853944_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP047809.1_2854041_2855349_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP047809.1_2855454_2856705_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
