The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	0	25045	2876963	terminase,tail,capsid,portal,protease,head,holin	Staphylococcus_phage(100.0%)	29	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_161575632.1|2848_3586_+|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	99.6	1.5e-128
WP_000154555.1|3609_4755_+|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000238237.1|4774_5035_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000150936.1|5047_5332_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5315_5678_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114225.1|5674_6079_+	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6075_6483_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268741.1|6483_7128_+|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_072050172.1|7169_7394_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_001096355.1|7443_7794_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_161575633.1|8038_12568_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	99.9	0.0e+00
WP_057520789.1|12564_14049_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	1.5e-297
WP_050956529.1|14064_17847_+	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.9	0.0e+00
WP_001000058.1|17839_17992_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18037_18325_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18380_18755_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000750412.1|19127_19901_+	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_011447039.1|20009_20186_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20238_20346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20397_20652_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20663_21419_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|21609_22101_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_117225185.1|22628_23087_+	amidase	NA	R9QTN8	Staphylococcus_phage	96.7	3.5e-83
WP_001788502.1|23331_23484_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|23554_23665_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|23651_23852_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000528632.1|24487_25045_+	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
>prophage 2
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	36452	39121	2876963		Tupanvirus(50.0%)	2	NA	NA
WP_000129653.1|36452_37910_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
WP_000613541.1|37906_39121_+	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
>prophage 3
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	43164	46792	2876963		Lake_Baikal_phage(50.0%)	3	NA	NA
WP_001143497.1|43164_43524_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
WP_000046076.1|43977_45186_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001009697.1|45316_46792_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	6.9e-48
>prophage 4
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	56712	63871	2876963		Aureococcus_anophage(33.33%)	6	NA	NA
WP_000035058.1|56712_57306_+	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
WP_001067294.1|57721_58099_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_161575636.1|58460_59588_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_000167314.1|59895_61086_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000138487.1|61194_62439_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_000185319.1|62941_63871_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
>prophage 5
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	74025	77679	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000154930.1|74025_77679_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	3.5e-24
>prophage 6
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	82796	89606	2876963		Pseudomonas_phage(33.33%)	4	NA	NA
WP_001044214.1|82796_84611_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	1.1e-36
WP_000353955.1|84813_87423_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001047066.1|87481_88351_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000619365.1|88460_89606_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	2.5e-05
>prophage 7
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	98201	100215	2876963		Planktothrix_phage(50.0%)	2	NA	NA
WP_000140050.1|98201_99284_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786734.1|99273_100215_+	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
>prophage 8
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	103866	104853	2876963		Bacillus_virus(100.0%)	1	NA	NA
WP_001067038.1|103866_104853_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	1.0e-15
>prophage 9
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	111964	161775	2876963	tRNA,protease,bacteriocin,transposase	Streptococcus_phage(37.5%)	47	NA	NA
WP_001251201.1|111964_113323_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	8.9e-42
WP_000681144.1|113327_115175_+	membrane protein	NA	NA	NA	NA	NA
WP_001624771.1|115164_116211_+	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	4.8e-19
WP_000810443.1|116217_116808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001255377.1|116863_117205_+	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000746372.1|117313_117817_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078056058.1|117797_118334_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	9.9e-29
WP_000593417.1|119170_120133_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180262.1|120144_121026_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000448934.1|121067_122057_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|122351_122747_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|123117_123837_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959287.1|123957_124944_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_161575638.1|124991_126800_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|127259_128066_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214065.1|128088_128454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|128557_129151_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_161575639.1|129336_129684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|129700_130336_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|130352_131162_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|131158_132013_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|132033_133419_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|133428_135273_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|135550_136321_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_050956416.1|136515_137601_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570692.1|137942_139511_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|139652_140411_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|140604_141114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161575640.1|141226_142435_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|142394_143570_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|144002_145484_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|145467_145728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049959.1|145727_147290_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|147591_148395_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001805132.1|148613_150938_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	8.1e-11
WP_000021864.1|150954_152313_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|152451_153963_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|154449_155019_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|155228_155447_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|155527_156514_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|156712_156889_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|156903_157506_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|158422_158524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|158533_158806_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_161575641.1|158849_160814_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|160816_161137_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|161133_161775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
>prophage 10
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	166337	166628	2876963		Enterococcus_phage(100.0%)	1	NA	NA
WP_078103409.1|166337_166628_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
>prophage 11
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	174933	175944	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676548.1|174933_175944_-	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 12
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	179610	183381	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002871047.1|179610_183381_-	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.9e-54
>prophage 13
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	193482	208242	2876963		Synechococcus_phage(22.22%)	14	NA	NA
WP_000225837.1|193482_194343_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
WP_000861572.1|194543_195026_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|195012_196137_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|196140_196845_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|196844_197108_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_161575643.1|197109_197781_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|197773_199963_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|199941_201426_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_161575644.1|201418_202447_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_161575645.1|202449_203016_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	6.8e-28
WP_000709290.1|203030_204509_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_001101908.1|204530_205778_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000273253.1|206042_206849_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_161575646.1|206841_208242_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.4e-10
>prophage 14
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	211421	215801	2876963		Streptococcus_phage(50.0%)	5	NA	NA
WP_000685079.1|211421_212594_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	9.0e-75
WP_000505965.1|212647_213190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000437472.1|213343_213610_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_161575647.1|213612_215331_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_001289614.1|215567_215801_-	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
>prophage 15
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	221915	230747	2876963		Synechococcus_phage(25.0%)	9	NA	NA
WP_000957036.1|221915_222467_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
WP_000668339.1|222831_223458_+	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000035320.1|223628_224741_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000068176.1|224744_225722_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000863440.1|225812_227105_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000260120.1|227108_228515_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.6e-46
WP_000455597.1|228682_228958_+	UPF0223 family protein	NA	NA	NA	NA	NA
WP_001020625.1|229100_229640_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000433551.1|229652_230747_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
>prophage 16
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	238882	240730	2876963		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|238882_240730_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 17
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	252247	255155	2876963		Paramecium_bursaria_Chlorella_virus(50.0%)	5	NA	NA
WP_000757569.1|252247_253174_-	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
WP_001049150.1|253412_253667_+	YlbG family protein	NA	NA	NA	NA	NA
WP_000814565.1|253669_254059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001263796.1|254128_254671_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000401377.1|254672_255155_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 18
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	267102	268161	2876963	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003559.1|267102_268161_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 19
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	272902	277460	2876963		Bodo_saltans_virus(33.33%)	3	NA	NA
WP_000161942.1|272902_274615_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
WP_001249285.1|274624_276973_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	1.1e-15
WP_001018928.1|277145_277460_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
>prophage 20
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	291462	293422	2876963		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000857483.1|291462_292422_-	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	29.9	2.8e-34
WP_000765708.1|293094_293241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001802045.1|293197_293422_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
>prophage 21
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	302505	302694	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245802.1|302505_302694_+	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 22
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	322284	325038	2876963	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|322284_325038_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 23
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	329501	334112	2876963		Enterobacteria_phage(33.33%)	4	NA	NA
WP_161575651.1|329501_330809_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	5.7e-54
WP_001016166.1|330836_331718_+	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_050956439.1|331735_333010_+	dihydroorotase	NA	NA	NA	NA	NA
WP_001190913.1|333011_334112_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
>prophage 24
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	338079	338691	2876963		Pandoravirus(100.0%)	1	NA	NA
WP_001040245.1|338079_338691_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	6.2e-27
>prophage 25
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	342005	344262	2876963		Abalone_herpesvirus(50.0%)	3	NA	NA
WP_000368227.1|342005_342629_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	3.6e-22
WP_000933956.1|342628_342847_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_161575652.1|343062_344262_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
>prophage 26
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	349274	350210	2876963	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_161575653.1|349274_350210_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.3	4.7e-10
>prophage 27
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	353357	355352	2876963		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|353357_355352_+	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 28
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	365722	367779	2876963		Trichoplusia_ni_ascovirus(33.33%)	3	NA	NA
WP_000167269.1|365722_366457_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
WP_000426914.1|366698_366932_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000043237.1|367047_367779_+	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
>prophage 29
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	381163	394834	2876963	tRNA,protease	Emiliania_huxleyi_virus(16.67%)	11	NA	NA
WP_000176394.1|381163_381931_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
WP_001020801.1|382039_383206_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000110253.1|383227_384136_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001041662.1|384362_385481_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000672867.1|385508_386753_+	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_000593192.1|386925_387798_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_001548566.1|387971_390047_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000195254.1|390202_391510_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001015597.1|391926_392823_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
WP_000072681.1|392819_393365_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_000379054.1|393430_394834_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
>prophage 30
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	399609	400380	2876963		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|399609_400380_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 31
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	404678	416491	2876963	tRNA	Clostridium_phage(33.33%)	9	NA	NA
WP_001820550.1|404678_408989_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
WP_161575655.1|409278_409746_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_161575656.1|409766_410942_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000727423.1|410962_411247_+	YlxR family protein	NA	NA	NA	NA	NA
WP_000020853.1|411243_411561_+	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000043634.1|411565_413683_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000097322.1|414068_414419_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_161575657.1|414587_415505_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000864185.1|415519_416491_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
>prophage 32
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	421631	427175	2876963		Mycobacterium_phage(33.33%)	4	NA	NA
WP_161575773.1|421631_423875_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
WP_001293307.1|423879_424593_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000089941.1|424623_425889_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_161575658.1|425888_427175_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
>prophage 33
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	431376	432420	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|431376_432420_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 34
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	441834	448306	2876963		Cafeteria_roenbergensis_virus(33.33%)	4	NA	NA
WP_000073353.1|441834_444453_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.8	2.9e-41
WP_000516261.1|444465_446475_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.3	2.8e-60
WP_001077635.1|446480_447023_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103743.1|447487_448306_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
>prophage 35
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	454248	454725	2876963		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|454248_454725_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 36
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	459794	466218	2876963		Staphylococcus_phage(66.67%)	14	NA	NA
WP_001789891.1|459794_459992_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_001789892.1|460680_460905_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002340.1|461197_461404_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001788716.1|462104_462215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|462642_462828_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477492.1|463339_463444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791646.1|463398_463572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|463572_463824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000899337.1|463869_464454_+	hypothetical protein	NA	Q4ZE35	Staphylococcus_virus	72.0	2.0e-30
WP_000906224.1|464574_464823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790531.1|464857_464980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000903039.1|465099_465366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600812.1|465362_465500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000900530.1|465927_466218_+	hypothetical protein	NA	S6B1L4	Thermus_phage	35.1	5.4e-05
>prophage 37
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	470767	475043	2876963		Anomala_cuprea_entomopoxvirus(50.0%)	6	NA	NA
WP_000593436.1|470767_471676_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
WP_000603968.1|471644_472376_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_115172190.1|472379_473471_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000202390.1|473467_474070_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001027143.1|474182_474371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000841351.1|474509_475043_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
>prophage 38
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	485179	490835	2876963		Tupanvirus(25.0%)	7	NA	NA
WP_050956447.1|485179_486697_+	catalase	NA	A0A2K9L0T1	Tupanvirus	43.0	1.5e-90
WP_001265708.1|486787_486937_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001085655.1|487390_487660_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_000688126.1|487816_488794_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	100.0	2.1e-186
WP_001791425.1|488790_488895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161575659.1|488968_489832_+	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	4.1e-16
WP_001208760.1|490211_490835_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
>prophage 39
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	494984	496106	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691284.1|494984_496106_+	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 40
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	499775	501422	2876963		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|499775_501422_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 41
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	507358	511752	2876963		Bacillus_virus(50.0%)	2	NA	NA
WP_001548666.1|507358_509350_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
WP_001289569.1|509349_511752_+	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.8e-93
>prophage 42
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	521411	522674	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|521411_522674_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 43
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	526992	529347	2876963		Acinetobacter_phage(100.0%)	3	NA	NA
WP_161575662.1|526992_527559_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
WP_000173832.1|527564_528563_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	3.8e-34
WP_000154116.1|528564_529347_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.2e-27
>prophage 44
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	536805	537507	2876963		Tupanvirus(100.0%)	1	NA	NA
WP_000571258.1|536805_537507_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	1.5e-13
>prophage 45
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	540921	544375	2876963		Streptococcus_phage(50.0%)	3	NA	NA
WP_048665379.1|540921_542736_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	2.6e-153
WP_000974847.1|542875_543517_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_161575664.1|543523_544375_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	30.4	6.8e-16
>prophage 46
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	549461	551063	2876963		Klosneuvirus(100.0%)	1	NA	NA
WP_000942300.1|549461_551063_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 47
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	558908	563939	2876963	lysis	Yellowstone_lake_phycodnavirus(33.33%)	7	NA	NA
WP_000216946.1|558908_560174_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
WP_000876201.1|560413_560815_-	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000809131.1|561011_561212_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000269923.1|561382_561691_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_001215907.1|561853_562123_+	acylphosphatase	NA	NA	NA	NA	NA
WP_001788788.1|562141_562771_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_000138413.1|562802_563939_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
>prophage 48
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	568419	569211	2876963		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|568419_569211_-	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 49
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	575376	577388	2876963		Hokovirus(50.0%)	2	NA	NA
WP_000166801.1|575376_576732_-	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
WP_000192137.1|576728_577388_-	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
>prophage 50
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	580796	590186	2876963		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000342125.1|580796_582287_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
WP_161575667.1|582478_582700_-	YozE family protein	NA	NA	NA	NA	NA
WP_000473652.1|582699_583200_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000913315.1|583211_583640_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000159902.1|583632_584166_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000166059.1|584251_585091_-	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000175751.1|585105_585585_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	2.6e-73
WP_000934885.1|585784_586741_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000995287.1|587164_587602_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000404650.1|587617_588742_-	virulence factor C	NA	NA	NA	NA	NA
WP_000691942.1|588779_589031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795441.1|589042_589237_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000282171.1|589481_590186_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
>prophage 51
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	629086	629965	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_001133011.1|629086_629965_-	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	6.2e-20
>prophage 52
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	639239	639917	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_001795446.1|639239_639917_+	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.9e-24
>prophage 53
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	643657	651163	2876963	tRNA	Temperate_phage(25.0%)	5	NA	NA
WP_000362212.1|643657_644344_-	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
WP_000858789.1|644671_645964_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|646285_648979_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049911.1|649002_649974_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|649960_651163_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
>prophage 54
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	654533	655109	2876963		Bacillus_virus(100.0%)	1	NA	NA
WP_000005213.1|654533_655109_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
>prophage 55
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	658771	664238	2876963		Pandoravirus(25.0%)	7	NA	NA
WP_001269929.1|658771_659938_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|660323_660524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|660732_661182_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|661273_662218_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|662234_662960_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|662962_663535_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|663965_664238_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
>prophage 56
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	673662	676341	2876963		Acanthamoeba_polyphaga_moumouvirus(50.0%)	3	NA	NA
WP_000902119.1|673662_675042_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|675031_675985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|676092_676341_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
>prophage 57
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	680732	692346	2876963		Staphylococcus_phage(16.67%)	12	NA	NA
WP_001033768.1|680732_682895_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.5	1.1e-107
WP_001548912.1|682887_683817_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|684061_685813_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_048665337.1|685793_686519_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000159577.1|686651_687389_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000368653.1|687381_687924_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000273371.1|687916_688648_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_161575671.1|688739_689246_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000447733.1|689323_690211_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_000392691.1|690259_690709_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_000365246.1|690813_691356_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_001171351.1|691437_692346_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	31.5	3.4e-05
>prophage 58
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	695875	697360	2876963		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|695875_697360_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 59
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	702006	703413	2876963		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|702006_703413_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 60
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	710242	716813	2876963		Indivirus(66.67%)	6	NA	NA
WP_161575676.1|710242_711664_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.1	1.5e-39
WP_153227785.1|711814_713494_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001124985.1|713509_713962_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000183378.1|714393_715275_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.1	8.9e-11
WP_000159865.1|715252_715483_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_161575677.1|715475_716813_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	3.5e-43
>prophage 61
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	724312	727124	2876963		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000202189.1|724312_725785_-	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	6.2e-81
WP_048665334.1|725777_727124_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	38.6	5.9e-62
>prophage 62
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	732668	733292	2876963		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|732668_733292_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 63
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	739465	753193	2876963	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_000863556.1|739465_740065_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
WP_001095260.1|740340_740751_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_000564316.1|740737_741601_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_048665333.1|741642_742428_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	6.1e-19
WP_000924214.1|742553_743444_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|743453_744800_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|744913_746014_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|746016_746694_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|746824_747931_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|748154_749954_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_161575678.1|750014_750833_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001789866.1|750843_751467_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001030080.1|751801_753193_+|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
>prophage 64
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	756246	757194	2876963		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|756246_757194_-	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 65
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	763664	766772	2876963		Catovirus(50.0%)	2	NA	NA
WP_001119021.1|763664_764804_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
WP_000034716.1|764939_766772_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
>prophage 66
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	770263	776427	2876963		Streptococcus_phage(33.33%)	5	NA	NA
WP_000368341.1|770263_772087_-	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
WP_001274017.1|772432_772684_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_001282562.1|772728_773703_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_000953300.1|773759_775907_-	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.2e-32
WP_000439693.1|775965_776427_-	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
>prophage 67
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	783696	786083	2876963		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001548981.1|783696_784449_-	enterotoxin	NA	A0EX09	Staphylococcus_phage	39.8	4.6e-48
WP_000542309.1|784862_786083_-	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	5.0e-52
>prophage 68
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	792755	828135	2876963	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_000648617.1|792755_793379_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
WP_000848304.1|793378_794647_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000137775.1|794658_795582_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_000342266.1|795584_796223_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000134779.1|796507_796816_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000939059.1|796830_797259_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000426912.1|797262_797523_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000734064.1|797585_800216_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_001283311.1|800558_803036_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000567028.1|803037_803706_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000066097.1|804167_805286_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000409167.1|805286_806429_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000985886.1|806740_807754_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000009238.1|807990_808137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752909.1|808176_808359_-	CsbD family protein	NA	NA	NA	NA	NA
WP_000704122.1|808458_808881_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000102735.1|808965_810240_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000682646.1|810400_811174_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_001790559.1|811173_811302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044800.1|811634_813401_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_000590826.1|813416_814679_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000717800.1|815139_816015_-	SH3 domain-containing protein	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000869983.1|816011_816464_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_001058583.1|816475_818665_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000364542.1|819092_819611_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|819632_821906_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|822108_824388_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|824662_824923_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|824941_826081_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|826103_827129_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|827130_828135_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 69
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	838002	840633	2876963	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|838002_840633_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 70
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	850200	861353	2876963	tRNA,protease	Bacillus_virus(20.0%)	12	NA	NA
WP_000472302.1|850200_851463_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
WP_000127573.1|851613_852915_-	trigger factor	NA	NA	NA	NA	NA
WP_011447025.1|852962_853073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048665328.1|853077_854007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000032657.1|854025_854634_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001138360.1|854775_855132_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001125540.1|855178_855379_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001791162.1|855407_855935_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_000049154.1|856163_857657_-	amino acid permease	NA	NA	NA	NA	NA
WP_000435140.1|858082_860020_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	5.9e-116
WP_001790562.1|860217_860340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000808621.1|860432_861353_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
>prophage 71
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	865267	873431	2876963		Bacillus_virus(25.0%)	5	NA	NA
WP_001114452.1|865267_866140_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
WP_001038308.1|866155_868786_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_000849435.1|869079_870567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011443641.1|871065_872727_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000080028.1|872726_873431_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
>prophage 72
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	880292	882050	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|880292_882050_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 73
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	886983	890181	2876963		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226907.1|886983_890181_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	1.3e-136
>prophage 74
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	907718	911853	2876963		Paramecium_bursaria_Chlorella_virus(50.0%)	4	NA	NA
WP_000174282.1|907718_908462_-	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
WP_161575684.1|908541_908988_+	OsmC family protein	NA	NA	NA	NA	NA
WP_000291415.1|909101_910262_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000808845.1|910248_911853_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
>prophage 75
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	915622	918253	2876963	tRNA,protease	uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_001279338.1|915622_916897_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
WP_000186029.1|916990_918253_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
>prophage 76
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	924869	926576	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862083.1|924869_926576_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	100.0	1.2e-274
>prophage 77
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	935481	940809	2876963		Mycobacterium_phage(50.0%)	3	NA	NA
WP_161575685.1|935481_939306_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.0e-83
WP_001048368.1|939326_939923_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_001091387.1|939951_940809_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
>prophage 78
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	952575	1035429	2876963	tRNA,protease,transposase	Staphylococcus_phage(93.44%)	76	NA	NA
WP_000285019.1|952575_953844_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
WP_161575686.1|953960_960521_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	3.4e-304
WP_000836465.1|960846_961158_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_050956550.1|961179_963594_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025061.1|963884_965066_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_161575687.1|965175_966129_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.1e-78
WP_000764419.1|966125_966689_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_161575688.1|966808_967210_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|968788_969616_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|969618_969738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|969849_970851_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|970972_971437_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|971449_972631_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|972641_973274_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|973280_974312_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261681.1|974804_976307_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|976829_977144_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989123.1|977143_978436_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000163235.1|978453_978849_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|979143_979998_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|980273_980498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671063.1|980696_981167_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
WP_001030465.1|981708_982152_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|982447_983083_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|983522_984236_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|984495_984798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|985053_985419_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|985415_985769_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|987852_988686_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|988897_989806_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|989930_991124_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|991494_993087_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|993222_993708_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|994082_994829_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|994833_995307_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|995372_995630_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|995626_996628_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_161575689.1|996632_998111_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	7.6e-281
WP_161575774.1|998269_998725_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_001795535.1|999027_999678_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|999758_1000754_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1000829_1001456_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1001496_1001841_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_161575690.1|1001938_1002490_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1002707_1003349_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1003462_1003648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1003649_1003826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070812.1|1003836_1004220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1004823_1004967_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1005169_1005265_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1005387_1005489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1005836_1006196_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_161575691.1|1011694_1012894_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.2	6.1e-228
WP_001793440.1|1012886_1014626_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1014606_1014741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1014805_1015525_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1015675_1016392_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1016493_1016601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1016549_1017269_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1017389_1018109_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1018166_1018889_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1019013_1019721_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1020684_1021251_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1021724_1022423_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1022419_1023181_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1023177_1023870_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1023892_1025266_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1025275_1025794_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1025809_1027054_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1027046_1030040_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1030104_1030248_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1030984_1031128_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1031369_1032353_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000878802.1|1032354_1033275_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
WP_001790220.1|1034088_1034628_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1034640_1035429_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 79
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1044310	1045051	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216878.1|1044310_1045051_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 80
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1054083	1060685	2876963	transposase	Streptococcus_phage(33.33%)	7	NA	NA
WP_031795584.1|1054083_1055439_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.3	2.2e-45
WP_161575693.1|1055635_1057552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001553872.1|1057541_1058579_+	CHAP domain-containing protein	NA	A0A1X9SGZ2	Bradyrhizobium_phage	31.4	2.7e-06
WP_161575694.1|1058585_1059179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031904066.1|1059226_1059589_+	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_161575695.1|1059700_1060231_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_078069959.1|1060211_1060685_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	45.0	2.3e-29
>prophage 81
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1069334	1069679	2876963		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|1069334_1069679_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 82
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1080515	1081244	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_001144055.1|1080515_1081244_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
>prophage 83
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1099388	1101125	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|1099388_1101125_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 84
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1116609	1117239	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000153530.1|1116609_1117239_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 85
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1122349	1122763	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_161575775.1|1122349_1122763_-	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	36.9	4.3e-16
>prophage 86
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1126214	1131243	2876963		Staphylococcus_phage(33.33%)	5	NA	NA
WP_000613733.1|1126214_1126769_+	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	36.3	9.2e-30
WP_000140176.1|1126836_1127907_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000548781.1|1128153_1128684_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_001147868.1|1128853_1130215_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.1e-103
WP_001231451.1|1130295_1131243_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
>prophage 87
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1138418	1145185	2876963		Ralstonia_phage(33.33%)	5	NA	NA
WP_000774565.1|1138418_1140422_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1140425_1142618_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|1142614_1143307_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1143478_1143781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1143889_1145185_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
>prophage 88
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1148887	1151171	2876963		Bacillus_virus(100.0%)	2	NA	NA
WP_000040873.1|1148887_1149709_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|1149701_1151171_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
>prophage 89
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1155201	1157231	2876963		Bacillus_phage(50.0%)	2	NA	NA
WP_000275730.1|1155201_1156299_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|1156670_1157231_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
>prophage 90
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1163852	1206416	2876963	integrase,terminase,protease,coat	Staphylococcus_phage(76.92%)	48	1176226:1176241	1209781:1209796
WP_000733621.1|1163852_1164698_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_000612780.1|1165011_1165422_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
WP_000514485.1|1165450_1165816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161575697.1|1165824_1167888_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706211.1|1167890_1169003_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_000267034.1|1170064_1170238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|1170688_1171729_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1171785_1172628_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1172624_1173182_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1173241_1173766_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1173886_1174450_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1174515_1175256_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1175255_1176128_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|1176124_1176805_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
1176226:1176241	attL	TTAAAATATATGAATA	NA	NA	NA	NA
WP_000991302.1|1176805_1177702_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1177698_1178079_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1178337_1178514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1178756_1178855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1179054_1180341_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|1180965_1182720_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_161575698.1|1183108_1184101_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.3	2.6e-160
WP_000595324.1|1184338_1185355_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
WP_000791407.1|1185376_1186432_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|1186866_1188090_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|1188461_1189307_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_161575699.1|1189368_1190280_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029625651.1|1191296_1191764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029625650.1|1191776_1192790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293084.1|1193176_1193746_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	8.7e-100
WP_078065371.1|1193742_1193955_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	94.3	5.4e-31
WP_000771371.1|1194086_1194614_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	1.4e-88
WP_029625649.1|1194666_1195320_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.1	1.7e-115
WP_000443639.1|1195350_1195692_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	6.4e-58
WP_001019811.1|1196227_1196869_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.1	2.2e-107
WP_000998179.1|1196865_1197150_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_153156945.1|1197151_1197514_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	97.5	2.9e-64
WP_094754105.1|1197792_1199262_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.3	4.2e-279
WP_161575700.1|1199278_1200148_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.2	6.1e-161
WP_001103933.1|1200214_1200532_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	48.1	1.2e-18
WP_001058487.1|1200534_1200744_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	92.8	2.2e-29
WP_000708434.1|1200736_1200883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072532959.1|1200879_1201197_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.3e-49
WP_000153640.1|1201201_1201420_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|1201592_1202267_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179346.1|1202280_1203453_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	1.3e-219
WP_000240645.1|1203521_1205138_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1205213_1205498_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|1205672_1206416_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
1209781:1209796	attR	TATTCATATATTTTAA	NA	NA	NA	NA
>prophage 91
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1212605	1226450	2876963	tRNA	uncultured_Caudovirales_phage(16.67%)	13	NA	NA
WP_000688492.1|1212605_1213322_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_001790167.1|1213393_1213501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001253312.1|1213688_1214648_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000141414.1|1214644_1216129_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.6	4.0e-19
WP_000790330.1|1216277_1217228_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001052270.1|1217410_1218661_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000581077.1|1218868_1219093_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_072353927.1|1219152_1220181_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_001283612.1|1220535_1221171_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602074.1|1221423_1223352_+	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	2.4e-53
WP_001790685.1|1223495_1223624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000106330.1|1223712_1225323_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
WP_000159034.1|1225424_1226450_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	6.9e-63
>prophage 92
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1230210	1234934	2876963		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_000047820.1|1230210_1231980_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	5.3e-63
WP_000196911.1|1231979_1232234_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000214557.1|1232370_1233375_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000094576.1|1233404_1234934_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
>prophage 93
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1248616	1252001	2876963		Bacillus_phage(50.0%)	5	NA	NA
WP_001041103.1|1248616_1249387_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
WP_011447044.1|1249361_1249871_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001052491.1|1249842_1250169_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_000390829.1|1250287_1251289_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_000621175.1|1251638_1252001_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
>prophage 94
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1257151	1259179	2876963		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546584.1|1257151_1259179_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	5.6e-24
>prophage 95
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1264866	1266387	2876963		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|1264866_1266387_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 96
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1273587	1274235	2876963		Moumouvirus(100.0%)	1	NA	NA
WP_001187629.1|1273587_1274235_+	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	6.1e-09
>prophage 97
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1280405	1280801	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|1280405_1280801_-	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 98
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1291204	1298954	2876963		Catovirus(25.0%)	9	NA	NA
WP_000723418.1|1291204_1292332_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
WP_000048712.1|1292355_1292985_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000120494.1|1293012_1294251_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000654185.1|1294277_1294802_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000697334.1|1294908_1295328_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_011447046.1|1295324_1296422_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	7.9e-41
WP_000248735.1|1296454_1297291_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000460242.1|1297277_1298354_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000273356.1|1298354_1298954_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
>prophage 99
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1306757	1308368	2876963		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159963.1|1306757_1308368_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	3.5e-146
>prophage 100
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1316306	1320138	2876963		Geobacillus_virus(50.0%)	4	NA	NA
WP_001242318.1|1316306_1317608_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	2.7e-133
WP_161575705.1|1317886_1318549_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000160304.1|1318863_1319574_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000070866.1|1319694_1320138_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
>prophage 101
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1332801	1335621	2876963		Bacillus_phage(50.0%)	2	NA	NA
WP_000908177.1|1332801_1333584_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	1.7e-08
WP_000334465.1|1333815_1335621_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
>prophage 102
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1341877	1349314	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_161575706.1|1341877_1349314_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	23.5	1.5e-18
>prophage 103
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1352903	1353812	2876963		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|1352903_1353812_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 104
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1371341	1372310	2876963		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989091.1|1371341_1372310_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.3e-15
>prophage 105
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1384468	1386031	2876963		Vibrio_phage(100.0%)	1	NA	NA
WP_161575708.1|1384468_1386031_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.8	2.1e-18
>prophage 106
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1389991	1391404	2876963		Pandoravirus(100.0%)	1	NA	NA
WP_000169220.1|1389991_1391404_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 107
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1397725	1400820	2876963		Orpheovirus(50.0%)	5	NA	NA
WP_001549592.1|1397725_1398466_+	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.4	7.3e-14
WP_001791678.1|1398502_1398664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333465.1|1398756_1399365_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001549596.1|1399626_1399752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015500.1|1399971_1400820_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
>prophage 108
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1404196	1413425	2876963	protease	Clostridium_phage(33.33%)	9	NA	NA
WP_001044432.1|1404196_1405051_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	41.4	3.4e-07
WP_000044363.1|1405261_1406077_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001549607.1|1406370_1406796_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000186134.1|1407159_1407864_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000130156.1|1407900_1409565_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	4.7e-45
WP_001797632.1|1409797_1410037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000655244.1|1410018_1410201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001570390.1|1410816_1412160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000402465.1|1412288_1413425_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2I7SAX5	Vibrio_phage	27.0	5.4e-08
>prophage 109
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1418854	1420521	2876963		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000155386.1|1418854_1419715_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
WP_000389662.1|1419711_1420521_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	2.2e-19
>prophage 110
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1443984	1447152	2876963		Leptospira_phage(100.0%)	1	NA	NA
WP_000592303.1|1443984_1447152_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 111
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1459066	1459672	2876963		Pithovirus(100.0%)	1	NA	NA
WP_000913019.1|1459066_1459672_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 112
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1478649	1479453	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|1478649_1479453_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 113
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1483369	1487350	2876963		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000737705.1|1483369_1483870_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
WP_000417016.1|1484231_1485185_+	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
WP_000684141.1|1485276_1486401_-	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	5.5e-13
WP_161575776.1|1486711_1487350_-	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
>prophage 114
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1500914	1501550	2876963		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|1500914_1501550_-	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 115
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1509428	1510310	2876963		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730043.1|1509428_1510310_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.2e-62
>prophage 116
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1516123	1516543	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|1516123_1516543_+	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 117
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1523915	1524815	2876963		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524836.1|1523915_1524815_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	4.2e-16
>prophage 118
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1536936	1538145	2876963		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|1536936_1538145_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 119
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1542724	1546621	2876963		Planktothrix_phage(33.33%)	4	NA	NA
WP_001229911.1|1542724_1543390_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.2e-36
WP_000761395.1|1543389_1544445_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000249497.1|1544580_1545255_+	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000477329.1|1545247_1546621_+	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	1.3e-13
>prophage 120
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1556481	1557516	2876963		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|1556481_1557516_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 121
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1578997	1580557	2876963		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|1578997_1580557_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 122
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1597205	1597937	2876963		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|1597205_1597937_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 123
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1605758	1611530	2876963		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000594519.1|1605758_1606688_+	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
WP_000916713.1|1607255_1608203_+	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.1	1.2e-138
WP_000783428.1|1608204_1609182_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000200948.1|1609233_1609701_-	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000286875.1|1609711_1610404_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000671751.1|1610414_1611530_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
>prophage 124
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1614990	1621177	2876963		Bacillus_phage(66.67%)	5	NA	NA
WP_000486494.1|1614990_1616724_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
WP_001064838.1|1616748_1618512_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.9	1.5e-36
WP_000482650.1|1619139_1619247_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000779358.1|1619380_1619767_-	GtrA family protein	NA	NA	NA	NA	NA
WP_001176863.1|1620034_1621177_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
>prophage 125
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1638904	1640763	2876963		Bacillus_virus(50.0%)	2	NA	NA
WP_000569120.1|1638904_1639540_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
WP_000948981.1|1639536_1640763_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 126
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1644456	1648885	2876963		Pandoravirus(50.0%)	4	NA	NA
WP_000700921.1|1644456_1645809_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
WP_001802848.1|1645870_1647049_-	MFS transporter	NA	NA	NA	NA	NA
WP_000072147.1|1647453_1648230_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000923520.1|1648222_1648885_-	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	6.5e-22
>prophage 127
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1656017	1657575	2876963		Bacillus_virus(50.0%)	2	NA	NA
WP_000590517.1|1656017_1656767_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	3.1e-20
WP_000173869.1|1656759_1657575_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.8e-13
>prophage 128
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1670936	1671632	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000217466.1|1670936_1671632_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
>prophage 129
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1678455	1683636	2876963		Bacillus_phage(50.0%)	3	NA	NA
WP_000088722.1|1678455_1681317_-	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	2.4e-28
WP_000755954.1|1681318_1681711_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001795457.1|1681827_1683636_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	38.1	1.9e-95
>prophage 130
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1691435	1692302	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|1691435_1692302_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 131
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1712684	1713380	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382904.1|1712684_1713380_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	3.0e-38
>prophage 132
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1722660	1723653	2876963		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|1722660_1723653_+	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 133
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1733239	1739623	2876963		Powai_lake_megavirus(33.33%)	5	NA	NA
WP_001228162.1|1733239_1734208_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	5.2e-12
WP_000240662.1|1734340_1734685_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000206033.1|1734726_1735137_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000473675.1|1735516_1737583_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_161575718.1|1737883_1739623_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	2.7e-35
>prophage 134
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1747505	1750541	2876963	protease	Streptococcus_phage(50.0%)	2	NA	NA
WP_161575720.1|1747505_1748027_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
WP_001058981.1|1748435_1750541_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
>prophage 135
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1759781	1763764	2876963		uncultured_virus(50.0%)	3	NA	NA
WP_000024127.1|1759781_1762190_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.0	4.9e-128
WP_000076661.1|1762469_1762676_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000161358.1|1762765_1763764_-	D-lactate dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	33.0	1.2e-35
>prophage 136
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1772197	1775986	2876963		Salmonella_virus(50.0%)	3	NA	NA
WP_000379821.1|1772197_1774009_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
WP_000996735.1|1774520_1775009_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000751267.1|1775284_1775986_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	4.0e-38
>prophage 137
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1804122	1814236	2876963	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000030057.1|1804122_1805460_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
WP_001237629.1|1805717_1806134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031413.1|1806256_1807147_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	28.6	1.0e-06
WP_001130051.1|1807339_1808836_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001791775.1|1809131_1809461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001172340.1|1809520_1811119_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_000708242.1|1811312_1811756_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_048665251.1|1812036_1812249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000066521.1|1812526_1814236_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
>prophage 138
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1820081	1822465	2876963		Enterococcus_phage(100.0%)	2	NA	NA
WP_000601724.1|1820081_1820618_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	49.4	8.6e-41
WP_001071717.1|1820614_1822465_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
>prophage 139
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1827517	1828015	2876963		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|1827517_1828015_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 140
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1831435	1833186	2876963		Planktothrix_phage(50.0%)	2	NA	NA
WP_000923760.1|1831435_1832191_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
WP_000143419.1|1832298_1833186_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
>prophage 141
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1858906	1860766	2876963		Enterococcus_phage(100.0%)	1	NA	NA
WP_161575724.1|1858906_1860766_+	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 142
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1886597	1887290	2876963		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185864.1|1886597_1887290_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.7e-28
>prophage 143
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1899695	1900709	2876963		Faustovirus(100.0%)	1	NA	NA
WP_000639183.1|1899695_1900709_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	2.1e-08
>prophage 144
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1906338	1908051	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138655.1|1906338_1908051_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 145
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1922308	1928879	2876963		Planktothrix_phage(25.0%)	8	NA	NA
WP_161575728.1|1922308_1923067_+	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	1.2e-35
WP_000143650.1|1923056_1924937_+	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000672039.1|1925029_1925221_+	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_001059079.1|1925613_1925814_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_001054118.1|1925940_1926510_-	helix-turn-helix domain-containing protein	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_000779136.1|1926769_1927165_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000491382.1|1927232_1927586_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000742837.1|1928039_1928879_-	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
>prophage 146
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1938961	1948000	2876963	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000255586.1|1938961_1940896_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
WP_000819084.1|1940932_1943596_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	2.7e-119
WP_000449218.1|1943682_1944495_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000177464.1|1944820_1946335_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.6	6.8e-91
WP_000884334.1|1946713_1948000_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
>prophage 147
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1954687	1964699	2876963		Bacillus_phage(40.0%)	7	NA	NA
WP_000375651.1|1954687_1956088_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.4	2.4e-111
WP_000095327.1|1956365_1957649_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000101976.1|1958852_1959554_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871607.1|1959566_1961393_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_001060131.1|1961385_1962720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104172.1|1962720_1963509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088648.1|1963898_1964699_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	4.6e-38
>prophage 148
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1968434	1974758	2876963		Bacillus_phage(66.67%)	6	NA	NA
WP_031903863.1|1968434_1969679_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.0	1.2e-32
WP_031903864.1|1970021_1970531_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_031903865.1|1970545_1970857_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_031903866.1|1970943_1971294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061657937.1|1971759_1973388_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	30.7	9.3e-46
WP_161575730.1|1973408_1974758_-	recombinase family protein	NA	Q9T200	Bacillus_phage	25.7	2.2e-16
>prophage 149
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1979565	1980408	2876963		Thermus_phage(100.0%)	1	NA	NA
WP_000114516.1|1979565_1980408_+	TIR domain-containing protein	NA	S6BFN8	Thermus_phage	37.6	1.4e-34
>prophage 150
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	1990131	1991199	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816129.1|1990131_1991199_+	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
>prophage 151
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2028042	2032252	2876963		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000136636.1|2028042_2029041_-	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	1.2e-14
WP_000924997.1|2029037_2030033_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_001045111.1|2030048_2031041_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000570808.1|2031271_2032252_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
>prophage 152
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2040518	2041721	2876963		Tupanvirus(100.0%)	1	NA	NA
WP_001223700.1|2040518_2041721_+	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	20.8	1.1e-08
>prophage 153
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2045091	2046072	2876963		Catovirus(100.0%)	1	NA	NA
WP_001789408.1|2045091_2046072_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
>prophage 154
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2051009	2051609	2876963		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|2051009_2051609_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 155
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2059644	2060418	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|2059644_2060418_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 156
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2071699	2078264	2876963		Catovirus(50.0%)	6	NA	NA
WP_000037332.1|2071699_2072386_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
WP_000565302.1|2072388_2073153_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_161575735.1|2073172_2074996_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	4.0e-29
WP_000459054.1|2074985_2076014_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.0	3.3e-41
WP_001028293.1|2076026_2077136_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000413171.1|2077139_2078264_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
>prophage 157
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2085099	2087584	2876963		Bacillus_phage(50.0%)	2	NA	NA
WP_000779497.1|2085099_2086362_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	26.0	6.6e-23
WP_000723454.1|2086438_2087584_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	2.4e-24
>prophage 158
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2090924	2093922	2876963		Indivirus(50.0%)	4	NA	NA
WP_001013484.1|2090924_2091884_+	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
WP_000356963.1|2091945_2092149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171919.1|2092327_2092840_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000590849.1|2093181_2093922_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	6.5e-39
>prophage 159
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2097460	2107744	2876963		Catovirus(50.0%)	3	NA	NA
WP_000706137.1|2097460_2098486_+	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
WP_000826862.1|2098871_2100122_+	MFS transporter	NA	NA	NA	NA	NA
WP_000605282.1|2100568_2107744_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.5	1.0e-67
>prophage 160
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2112580	2113765	2876963		Klosneuvirus(100.0%)	1	NA	NA
WP_050956505.1|2112580_2113765_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	1.6e-34
>prophage 161
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2131924	2133517	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_050956503.1|2131924_2133517_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	2.4e-22
>prophage 162
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2142052	2144111	2876963		Pontimonas_phage(50.0%)	2	NA	NA
WP_000166917.1|2142052_2142631_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
WP_000818914.1|2143013_2144111_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
>prophage 163
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2154321	2159680	2876963		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000127982.1|2154321_2155878_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
WP_000837105.1|2155874_2156843_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000894660.1|2157430_2159680_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
>prophage 164
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2170751	2172257	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008401.1|2170751_2172257_-	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	3.5e-39
>prophage 165
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2181132	2182662	2876963		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|2181132_2182662_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 166
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2189877	2190921	2876963		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645604.1|2189877_2190921_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	4.6e-14
>prophage 167
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2200248	2204788	2876963		Catovirus(50.0%)	3	NA	NA
WP_000975357.1|2200248_2201973_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000608826.1|2202112_2202787_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925394.1|2203048_2204788_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
>prophage 168
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2208548	2209985	2876963		Pandoravirus(100.0%)	1	NA	NA
WP_000163988.1|2208548_2209985_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	3.7e-30
>prophage 169
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2219274	2220936	2876963		Arthrobacter_phage(50.0%)	2	NA	NA
WP_000736798.1|2219274_2220225_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570071.1|2220276_2220936_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
>prophage 170
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2232899	2237339	2876963		Mycobacterium_phage(100.0%)	1	NA	NA
WP_161575738.1|2232899_2237339_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 171
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2256525	2257203	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911019.1|2256525_2257203_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	9.2e-32
>prophage 172
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2271376	2313512	2876963	integrase,terminase,plate,tail,capsid,portal,head,holin	Staphylococcus_phage(72.31%)	65	2271266:2271283	2314247:2314264
2271266:2271283	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_117434768.1|2271376_2272582_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.3	4.2e-221
WP_117434767.1|2272756_2273296_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	32.4	1.5e-13
WP_161575741.1|2273435_2273603_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	96.4	2.5e-23
WP_161575742.1|2273802_2274573_-	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	97.7	1.4e-137
WP_000338187.1|2274732_2274954_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_000435355.1|2274977_2275421_+	hypothetical protein	NA	A0A0H3U2S6	Staphylococcus_phage	99.3	2.0e-75
WP_000939502.1|2275435_2275579_+	hypothetical protein	NA	Q4ZAL7	Staphylococcus_virus	100.0	1.9e-16
WP_000642493.1|2275568_2275778_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	98.6	5.9e-30
WP_001572437.1|2275834_2276578_+	phage antirepressor protein	NA	A0A0E3T9K5	Staphylococcus_phage	99.2	8.9e-137
WP_103183909.1|2276602_2276818_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	91.5	1.0e-29
WP_001652266.1|2276773_2277019_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	95.1	2.9e-36
WP_000066027.1|2277198_2277360_+	DUF1270 family protein	NA	D2JGJ6	Staphylococcus_phage	96.2	2.1e-19
WP_000291076.1|2277453_2277714_+	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
WP_000815403.1|2277723_2277945_+	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_029052133.1|2277937_2278717_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	98.1	1.5e-139
WP_000704707.1|2278748_2279300_+	hypothetical protein	NA	Q4ZBM4	Staphylococcus_phage	99.5	1.7e-100
WP_161575743.1|2279312_2279984_+	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	98.6	2.4e-125
WP_016028252.1|2280093_2280753_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_000190224.1|2280798_2281569_+	hypothetical protein	NA	W5R8N2	Staphylococcus_phage	100.0	1.4e-116
WP_038804410.1|2281578_2282358_+	ATP-binding protein	NA	Q4ZBL6	Staphylococcus_phage	99.2	1.6e-144
WP_000256597.1|2282351_2282510_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123679.1|2282522_2282744_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	3.8e-35
WP_000401953.1|2282753_2283161_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	100.0	1.0e-73
WP_001187259.1|2283160_2283346_+	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	95.1	3.5e-26
WP_000907341.1|2283346_2283964_+	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.5	1.2e-83
WP_001126831.1|2283964_2284213_+	hypothetical protein	NA	S4SVD3	Staphylococcus_phage	98.8	1.6e-42
WP_000695764.1|2284225_2284630_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	90.3	1.3e-60
WP_000979209.1|2284626_2284974_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_117225835.1|2284970_2285279_+	hypothetical protein	NA	Q6R826	Staphylococcus_virus	93.1	1.0e-46
WP_001065089.1|2285271_2285520_+	DUF1024 family protein	NA	A9CR86	Staphylococcus_phage	98.8	2.7e-37
WP_161575744.1|2285512_2286046_+	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	96.6	3.7e-92
WP_000120374.1|2286082_2286328_+	hypothetical protein	NA	A9CR89	Staphylococcus_phage	100.0	6.5e-28
WP_000195769.1|2286324_2286531_+	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	97.1	1.6e-19
WP_001072794.1|2286527_2286731_+	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_001796216.1|2286723_2286939_+	hypothetical protein	NA	A0A0H3U4U1	Staphylococcus_phage	73.2	1.3e-16
WP_000990005.1|2286939_2287086_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_024273316.1|2287100_2287520_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	97.8	2.0e-69
WP_001003271.1|2287705_2288146_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169945.1|2288132_2289410_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_001652961.1|2289420_2290956_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	100.0	4.5e-292
WP_161575745.1|2290962_2291958_+|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	99.1	1.4e-182
WP_000072205.1|2292030_2292201_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	100.0	4.3e-23
WP_000392141.1|2292309_2292930_+	DUF4355 domain-containing protein	NA	Q4ZDM9	Staphylococcus_virus	100.0	1.1e-63
WP_161575746.1|2292943_2293918_+|capsid	phage major capsid protein	capsid	I1W645	Staphylococcus_phage	99.7	1.8e-182
WP_061821932.1|2293939_2294227_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	5.2e-45
WP_000208960.1|2294235_2294568_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_009560319.1|2294564_2294867_+	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	100.0	8.8e-51
WP_001017815.1|2294866_2295214_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_015977972.1|2295225_2295609_+	hypothetical protein	NA	Q4ZDM4	Staphylococcus_virus	100.0	2.6e-68
WP_015977970.1|2295627_2296209_+|tail	phage major tail protein, TP901-1 family	tail	Q4ZDM3	Staphylococcus_virus	100.0	1.8e-105
WP_001100161.1|2296270_2296636_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|2296665_2297010_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_161575747.1|2297026_2300491_+	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	93.8	1.5e-258
WP_001557971.1|2300503_2301451_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
WP_031942138.1|2301459_2303361_+	peptidase	NA	Q4ZDD8	Staphylococcus_virus	99.8	0.0e+00
WP_001668931.1|2303375_2305286_+	hypothetical protein	NA	Q4ZDL3	Staphylococcus_virus	100.0	0.0e+00
WP_161575748.1|2305285_2307109_+|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	94.4	1.1e-302
WP_000705910.1|2307108_2307486_+	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	100.0	1.2e-60
WP_000782200.1|2307489_2307663_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466784.1|2307703_2308003_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_161575749.1|2308139_2310038_+	CHAP domain-containing protein	NA	A0EWU7	Staphylococcus_virus	99.4	0.0e+00
WP_161575750.1|2310050_2311289_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	98.3	2.3e-206
WP_000398864.1|2311293_2311689_+	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	99.2	4.7e-68
WP_000339141.1|2311744_2312047_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_031788419.1|2312057_2313512_+	CHAP domain-containing protein	NA	I1W626	Staphylococcus_phage	99.8	5.7e-289
2314247:2314264	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 173
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2318415	2321150	2876963		Tupanvirus(50.0%)	3	NA	NA
WP_000449060.1|2318415_2319216_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	8.9e-42
WP_001191946.1|2319205_2320150_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000280803.1|2320127_2321150_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	29.7	1.1e-09
>prophage 174
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2342248	2343091	2876963		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209565.1|2342248_2343091_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	7.7e-12
>prophage 175
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2353009	2361427	2876963	integrase	Staphylococcus_phage(66.67%)	12	2342117:2342131	2364469:2364483
2342117:2342131	attL	TATTCAATTACTACT	NA	NA	NA	NA
WP_000655692.1|2353009_2354113_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
WP_001550052.1|2354776_2355622_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_001077602.1|2355778_2356660_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000157345.1|2356689_2356893_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001218732.1|2356904_2358002_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_001052483.1|2358087_2358279_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|2358522_2358819_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|2358839_2359343_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|2359394_2359637_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_001822249.1|2359902_2360841_-	Abi family protein	NA	NA	NA	NA	NA
WP_001797636.1|2360879_2361191_-|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	70.5	5.5e-24
WP_000237577.1|2361268_2361427_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	66.7	6.7e-10
2364469:2364483	attR	TATTCAATTACTACT	NA	NA	NA	NA
>prophage 176
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2367622	2369146	2876963		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930486.1|2367622_2369146_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
>prophage 177
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2378106	2383556	2876963	transposase	Klosneuvirus(25.0%)	5	NA	NA
WP_000264071.1|2378106_2379573_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|2379597_2381139_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000551776.1|2381251_2381788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000041883.1|2382180_2382885_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	2.6e-29
WP_000159787.1|2383283_2383556_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
>prophage 178
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2397258	2400031	2876963		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000028628.1|2397258_2398815_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	6.8e-288
WP_046593615.1|2398807_2400031_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	63.5	1.1e-131
>prophage 179
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2426220	2432457	2876963		Lactococcus_phage(33.33%)	6	NA	NA
WP_000634105.1|2426220_2427135_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	6.6e-49
WP_001036663.1|2427118_2428261_+	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000569286.1|2428554_2429580_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	8.2e-32
WP_000467994.1|2429583_2430243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000825521.1|2430279_2431122_+	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_001170264.1|2431452_2432457_+	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
>prophage 180
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2440895	2447265	2876963	transposase	Streptococcus_phage(33.33%)	7	NA	NA
WP_001251201.1|2440895_2442254_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	8.9e-42
WP_000681144.1|2442258_2444106_+	membrane protein	NA	NA	NA	NA	NA
WP_001624771.1|2444095_2445142_+	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	4.8e-19
WP_000810443.1|2445148_2445739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001255377.1|2445794_2446136_+	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000746372.1|2446244_2446748_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078056058.1|2446728_2447265_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	9.9e-29
>prophage 181
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2462445	2464143	2876963		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109047.1|2462445_2464143_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 182
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2473534	2474152	2876963		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|2473534_2474152_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 183
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2478058	2481156	2876963	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
WP_000279926.1|2478058_2478898_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
WP_001051127.1|2479182_2481156_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	1.9e-93
>prophage 184
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2487040	2489505	2876963		Tupanvirus(50.0%)	2	NA	NA
WP_001252529.1|2487040_2488393_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
WP_000933774.1|2488539_2489505_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
>prophage 185
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2498761	2509033	2876963	tRNA	Klosneuvirus(16.67%)	10	NA	NA
WP_001176715.1|2498761_2500057_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
WP_000551283.1|2500061_2500601_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001167888.1|2500857_2502951_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000148605.1|2503179_2504061_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000057594.1|2504239_2505172_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000167924.1|2505387_2506191_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	1.3e-21
WP_001154302.1|2506168_2506534_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000613716.1|2506530_2507007_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001790128.1|2507400_2507493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288202.1|2507545_2509033_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
>prophage 186
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2527964	2530421	2876963	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|2527964_2530421_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 187
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2536432	2537833	2876963	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000631963.1|2536432_2537833_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 188
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2544898	2555852	2876963		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000918667.1|2544898_2548450_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
WP_001788197.1|2548613_2552210_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000031892.1|2552346_2552601_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001142337.1|2552698_2553112_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_001137495.1|2553177_2553648_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_000090315.1|2553770_2555852_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
>prophage 189
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2558880	2560068	2876963		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250824.1|2558880_2560068_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	7.5e-45
>prophage 190
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2566645	2567308	2876963		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067262.1|2566645_2567308_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 191
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2585749	2589070	2876963		Burkholderia_virus(50.0%)	2	NA	NA
WP_000347061.1|2585749_2587150_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
WP_001100835.1|2587693_2589070_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
>prophage 192
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2592711	2593368	2876963		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|2592711_2593368_+	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 193
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2604673	2605996	2876963		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860582.1|2604673_2605996_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.3	2.2e-109
>prophage 194
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2619543	2622897	2876963		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_000180230.1|2619543_2620839_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	2.1e-24
WP_001788287.1|2620866_2621388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200748.1|2621886_2622897_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
>prophage 195
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2635968	2636529	2876963	integrase	Streptococcus_phage(100.0%)	1	2628562:2628576	2641210:2641224
2628562:2628576	attL	TATTATCATTGCATT	NA	NA	NA	NA
WP_001044914.1|2635968_2636529_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	1.3e-18
WP_001044914.1|2635968_2636529_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	1.3e-18
2641210:2641224	attR	TATTATCATTGCATT	NA	NA	NA	NA
>prophage 196
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2647680	2648424	2876963		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|2647680_2648424_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 197
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2655358	2659317	2876963		Streptomyces_phage(33.33%)	3	NA	NA
WP_000832260.1|2655358_2655757_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
WP_000793070.1|2655873_2657169_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000817954.1|2657589_2659317_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
>prophage 198
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2662544	2663342	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|2662544_2663342_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 199
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2669864	2670908	2876963		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030771.1|2669864_2670908_+	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 200
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2675282	2676044	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|2675282_2676044_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 201
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2680875	2681673	2876963		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|2680875_2681673_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 202
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2686935	2687409	2876963		Pandoravirus(100.0%)	1	NA	NA
WP_000833483.1|2686935_2687409_+	cupin	NA	A0A291AU44	Pandoravirus	39.4	2.1e-14
>prophage 203
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2694200	2700480	2876963		Enterococcus_phage(33.33%)	6	NA	NA
WP_000820892.1|2694200_2694767_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
WP_000148828.1|2694768_2695227_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000358498.1|2695229_2695913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469890.1|2696084_2696960_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000737143.1|2697178_2698810_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000857602.1|2698806_2700480_+	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	22.9	4.5e-11
>prophage 204
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2705457	2706831	2876963		Bandra_megavirus(100.0%)	1	NA	NA
WP_000952048.1|2705457_2706831_+	deoxyribodipyrimidine photo-lyase	NA	A0A2K9V7Z5	Bandra_megavirus	29.2	5.6e-44
>prophage 205
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2718443	2728289	2876963		Staphylococcus_phage(12.5%)	12	NA	NA
WP_000931237.1|2718443_2719283_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
WP_000702782.1|2719414_2720398_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000244412.1|2720469_2721525_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|2721524_2722211_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2722185_2722659_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|2723000_2723441_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|2723720_2724305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2724403_2725117_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2725120_2725540_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2725541_2726210_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|2726560_2727154_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|2727137_2728289_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 206
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2731428	2755050	2876963		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000098285.1|2731428_2733369_+	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
WP_000525111.1|2733639_2735523_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000983677.1|2735534_2737316_+	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000589260.1|2737537_2738515_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000180991.1|2738507_2740022_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000663030.1|2740261_2741320_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|2741670_2742213_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|2742892_2743810_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|2743900_2744002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|2744080_2745586_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_161575764.1|2745926_2746427_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.9e-51
WP_001068497.1|2746446_2747313_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2748114_2748513_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2748475_2750581_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2750698_2751670_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|2752183_2752339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2752377_2753349_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245578.1|2753335_2754292_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|2754288_2755050_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 207
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2764332	2770043	2876963		Streptococcus_phage(66.67%)	5	NA	NA
WP_000460983.1|2764332_2765403_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
WP_000258151.1|2765720_2766776_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000192947.1|2766945_2767587_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000686342.1|2767730_2768597_+	DegV family protein	NA	NA	NA	NA	NA
WP_001548033.1|2768960_2770043_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	1.3e-43
>prophage 208
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2776121	2776961	2876963		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749380.1|2776121_2776961_+	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 209
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2780279	2783126	2876963		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662681.1|2780279_2783126_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 210
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2787516	2793393	2876963		Streptococcus_phage(40.0%)	5	NA	NA
WP_000134963.1|2787516_2788452_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
WP_000369722.1|2789275_2790187_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_001248939.1|2790183_2791179_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000006551.1|2791288_2792233_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001049165.1|2792805_2793393_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
>prophage 211
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2802449	2821702	2876963	integrase,terminase,coat	Staphylococcus_phage(72.22%)	26	2792527:2792543	2820880:2820896
2792527:2792543	attL	TATTGTATTTTATTAAA	NA	NA	NA	NA
WP_001121760.1|2802449_2803754_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
WP_000785252.1|2804093_2804552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|2804618_2804852_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165952.1|2804967_2805708_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001050064.1|2805741_2808114_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	2.7e-94
WP_001085185.1|2808135_2808600_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000121223.1|2809162_2810269_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
WP_072474260.1|2810274_2810922_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|2811079_2811286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161575765.1|2811321_2811549_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|2811545_2811719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|2811685_2811889_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403833.1|2811890_2812274_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
WP_001103972.1|2812274_2812598_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
WP_161575766.1|2812642_2814259_+	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.9	5.1e-246
WP_161575767.1|2814434_2815238_+	DNA primase	NA	Q4ZE69	Staphylococcus_phage	96.3	1.4e-148
WP_161575768.1|2815224_2815497_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	91.1	5.7e-41
WP_161575769.1|2815498_2816140_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	5.5e-111
WP_161575770.1|2816675_2817017_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	97.3	1.2e-56
WP_000846290.1|2817028_2817607_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.3e-29
WP_000448773.1|2817624_2817843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123089815.1|2817893_2818421_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	94.9	7.8e-87
WP_123089814.1|2818423_2818765_+	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	94.7	3.5e-56
WP_001293078.1|2818761_2819331_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.7e-100
WP_001820511.1|2819722_2820907_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	21.5	1.5e-05
2820880:2820896	attR	TTTAATAAAATACAATA	NA	NA	NA	NA
WP_001035618.1|2821147_2821702_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
>prophage 212
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2825756	2826485	2876963		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000757406.1|2825756_2826485_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
>prophage 213
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2835584	2836828	2876963		Bacillus_phage(50.0%)	2	NA	NA
WP_001548082.1|2835584_2836271_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
WP_001059082.1|2836627_2836828_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
>prophage 214
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2840232	2845409	2876963		Streptococcus_phage(50.0%)	8	NA	NA
WP_001802951.1|2840232_2840793_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
WP_000255561.1|2840865_2841483_-	amino acid transporter	NA	NA	NA	NA	NA
WP_000569884.1|2841637_2842132_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000974460.1|2842530_2842953_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000150017.1|2843100_2843817_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	3.0e-17
WP_000422908.1|2843899_2844439_+	nitroreductase	NA	NA	NA	NA	NA
WP_001190695.1|2844588_2844909_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000589549.1|2845052_2845409_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
>prophage 215
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2848670	2849696	2876963		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571218.1|2848670_2849696_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 216
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	2876963	2853182	2876492	2876963	integrase	Staphylococcus_phage(85.29%)	39	2856012:2856026	2869026:2869040
WP_000168845.1|2853182_2853944_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_161575771.1|2854041_2855349_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_001006454.1|2855454_2856705_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
2856012:2856026	attL	TAATGATGTTAAAAC	NA	NA	NA	NA
WP_001010508.1|2856694_2857159_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|2857309_2858707_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_031764589.1|2858774_2859824_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	5.9e-203
WP_031900793.1|2859890_2860133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2860143_2861127_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_031881520.1|2861182_2861812_-	LexA family transcriptional regulator	NA	Q4ZB06	Staphylococcus_virus	99.5	5.8e-113
WP_015978369.1|2861965_2862193_+	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	100.0	1.6e-36
WP_031900794.1|2862215_2862992_+	transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	89.1	9.0e-124
WP_000435341.1|2863017_2863278_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|2863301_2863841_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_001148618.1|2863897_2864650_+	oxidoreductase	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
WP_000388066.1|2864666_2864861_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
WP_000939496.1|2864891_2865032_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|2865046_2865679_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000594790.1|2865749_2865971_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
WP_050956528.1|2865963_2866125_+	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	98.1	7.2e-20
WP_000291489.1|2866217_2866478_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_001205732.1|2866486_2866750_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700562.1|2866758_2868702_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.2	0.0e+00
WP_000138481.1|2868703_2869624_+	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
2869026:2869040	attR	TAATGATGTTAAAAC	NA	NA	NA	NA
WP_071621397.1|2869704_2870322_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000934770.1|2870322_2870793_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_000148301.1|2870822_2871707_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
WP_000338528.1|2871713_2871932_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|2871940_2872345_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101274.1|2872357_2872726_+	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000131366.1|2872729_2872972_+	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_161575772.1|2873036_2873486_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	98.7	1.8e-79
WP_001105598.1|2873482_2873992_+	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
WP_000197967.1|2873988_2874399_+	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_001066444.1|2874391_2874928_+	hypothetical protein	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000195820.1|2874964_2875171_+	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_000595265.1|2875167_2875317_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265041.1|2875316_2875517_+	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000590126.1|2875544_2875961_+	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000988336.1|2876192_2876492_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
