assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931715.1_ASM993171v1	NZ_CP048003	Lactobacillus paracasei strain CACC 566 chromosome, complete genome	1	202708-202838	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2	Orphan	GACCAAAGCCCTGTCTGATATTGCTGAACTCCGAAACGCGCAAACCG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2,PrimPol	NA|354aa|up_9|NZ_CP048003.1_194675_195737_+,NA|175aa|up_6|NZ_CP048003.1_197669_198194_-,NA|60aa|up_5|NZ_CP048003.1_198271_198451_-,NA|78aa|up_1|NZ_CP048003.1_201547_201781_+,NA|65aa|down_9|NZ_CP048003.1_213629_213824_+	NA|354aa|up_9|NZ_CP048003.1_194675_195737_+	NA	NA|274aa|up_8|NZ_CP048003.1_195910_196732_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|211aa|up_7|NZ_CP048003.1_196803_197436_-	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_6|NZ_CP048003.1_197669_198194_-	NA	NA|60aa|up_5|NZ_CP048003.1_198271_198451_-	NA	NA|223aa|up_4|NZ_CP048003.1_198447_199116_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|262aa|up_3|NZ_CP048003.1_199118_199904_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|368aa|up_2|NZ_CP048003.1_200114_201218_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|78aa|up_1|NZ_CP048003.1_201547_201781_+	NA	NA|159aa|up_0|NZ_CP048003.1_201774_202251_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|1042aa|down_0|NZ_CP048003.1_203240_206366_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|374aa|down_1|NZ_CP048003.1_206365_207487_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|209aa|down_2|NZ_CP048003.1_207547_208174_+	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|259aa|down_3|NZ_CP048003.1_208618_209395_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|143aa|down_4|NZ_CP048003.1_209399_209828_+	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|173aa|down_5|NZ_CP048003.1_209872_210391_+	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|334aa|down_6|NZ_CP048003.1_210429_211431_+	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|313aa|down_7|NZ_CP048003.1_211545_212484_+	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|227aa|down_8|NZ_CP048003.1_212505_213186_+	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|65aa|down_9|NZ_CP048003.1_213629_213824_+	NA
GCF_009931715.1_ASM993171v1	NZ_CP048003	Lactobacillus paracasei strain CACC 566 chromosome, complete genome	2	375225-375313	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2	Orphan	GCTGCTGGTGCCTCACTGGCTGGTTCTGT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2,PrimPol	NA|146aa|up_9|NZ_CP048003.1_367525_367963_-,NA|85aa|up_8|NZ_CP048003.1_367952_368207_-,NA|60aa|up_7|NZ_CP048003.1_368247_368427_-,NA|274aa|up_6|NZ_CP048003.1_369029_369851_-,NA|215aa|up_4|NZ_CP048003.1_370244_370889_-,NA|643aa|up_2|NZ_CP048003.1_371916_373845_-,NA|199aa|up_1|NZ_CP048003.1_373825_374422_-,NA|112aa|up_0|NZ_CP048003.1_374405_374741_-,NA|193aa|down_1|NZ_CP048003.1_379223_379802_-,NA|414aa|down_4|NZ_CP048003.1_381776_383018_-,NA|76aa|down_5|NZ_CP048003.1_383060_383288_-,NA|89aa|down_6|NZ_CP048003.1_383484_383751_-,NA|93aa|down_7|NZ_CP048003.1_383762_384041_-	NA|146aa|up_9|NZ_CP048003.1_367525_367963_-	NA	NA|85aa|up_8|NZ_CP048003.1_367952_368207_-	NA	NA|60aa|up_7|NZ_CP048003.1_368247_368427_-	NA	NA|274aa|up_6|NZ_CP048003.1_369029_369851_-	NA	NA|136aa|up_5|NZ_CP048003.1_369840_370248_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|215aa|up_4|NZ_CP048003.1_370244_370889_-	NA	NA|337aa|up_3|NZ_CP048003.1_370904_371915_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|643aa|up_2|NZ_CP048003.1_371916_373845_-	NA	NA|199aa|up_1|NZ_CP048003.1_373825_374422_-	NA	NA|112aa|up_0|NZ_CP048003.1_374405_374741_-	NA	NA|819aa|down_0|NZ_CP048003.1_376740_379197_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|193aa|down_1|NZ_CP048003.1_379223_379802_-	NA	NA|140aa|down_2|NZ_CP048003.1_379810_380230_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|520aa|down_3|NZ_CP048003.1_380239_381799_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|414aa|down_4|NZ_CP048003.1_381776_383018_-	NA	NA|76aa|down_5|NZ_CP048003.1_383060_383288_-	NA	NA|89aa|down_6|NZ_CP048003.1_383484_383751_-	NA	NA|93aa|down_7|NZ_CP048003.1_383762_384041_-	NA	NA|288aa|down_8|NZ_CP048003.1_384722_385586_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|314aa|down_9|NZ_CP048003.1_385631_386573_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_009931715.1_ASM993171v1	NZ_CP048003	Lactobacillus paracasei strain CACC 566 chromosome, complete genome	3	1714638-1717313	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,csn2	DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2	Type II-A	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	36,36,36	0	0	NA	NA	NA:NA:NA	39,40,40	40	TypeII-A	DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2,PrimPol	NA|108aa|up_6|NZ_CP048003.1_1705373_1705697_-,NA|389aa|up_4|NZ_CP048003.1_1706363_1707530_+,NA|265aa|up_3|NZ_CP048003.1_1707530_1708325_+,NA|367aa|down_0|NZ_CP048003.1_1717593_1718694_+,NA|50aa|down_8|NZ_CP048003.1_1728389_1728539_+	NA|338aa|up_9|NZ_CP048003.1_1700841_1701855_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|581aa|up_8|NZ_CP048003.1_1701851_1703594_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_7|NZ_CP048003.1_1703574_1705302_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|108aa|up_6|NZ_CP048003.1_1705373_1705697_-	NA	NA|125aa|up_5|NZ_CP048003.1_1705765_1706140_-	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|389aa|up_4|NZ_CP048003.1_1706363_1707530_+	NA	NA|265aa|up_3|NZ_CP048003.1_1707530_1708325_+	NA	cas1|302aa|up_2|NZ_CP048003.1_1712750_1713656_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP048003.1_1713633_1713939_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|NZ_CP048003.1_1713935_1714613_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|367aa|down_0|NZ_CP048003.1_1717593_1718694_+	NA	NA|142aa|down_1|NZ_CP048003.1_1718845_1719271_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|564aa|down_2|NZ_CP048003.1_1719467_1721159_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|544aa|down_3|NZ_CP048003.1_1721155_1722787_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|286aa|down_4|NZ_CP048003.1_1722924_1723782_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|613aa|down_5|NZ_CP048003.1_1724233_1726072_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|483aa|down_6|NZ_CP048003.1_1726242_1727691_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|189aa|down_7|NZ_CP048003.1_1727817_1728384_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|50aa|down_8|NZ_CP048003.1_1728389_1728539_+	NA	NA|473aa|down_9|NZ_CP048003.1_1728674_1730093_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_009931715.1_ASM993171v1	NZ_CP048003	Lactobacillus paracasei strain CACC 566 chromosome, complete genome	4	2066222-2066339	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2	Orphan	GCTGGCCCAGAAACCTACACATAAGGACC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,csa5gr11,WYL,DinG,cas1,cas2,csn2,PrimPol	NA|56aa|up_7|NZ_CP048003.1_2056511_2056679_+,NA|141aa|up_2|NZ_CP048003.1_2062381_2062804_+,NA|125aa|up_1|NZ_CP048003.1_2062943_2063318_+,NA|73aa|down_6|NZ_CP048003.1_2074121_2074340_+	NA|164aa|up_9|NZ_CP048003.1_2053886_2054378_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|704aa|up_8|NZ_CP048003.1_2054364_2056476_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|56aa|up_7|NZ_CP048003.1_2056511_2056679_+	NA	NA|556aa|up_6|NZ_CP048003.1_2056893_2058561_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|106aa|up_5|NZ_CP048003.1_2058731_2059049_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|379aa|up_4|NZ_CP048003.1_2059157_2060294_-	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|457aa|up_3|NZ_CP048003.1_2060388_2061759_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|141aa|up_2|NZ_CP048003.1_2062381_2062804_+	NA	NA|125aa|up_1|NZ_CP048003.1_2062943_2063318_+	NA	NA|773aa|up_0|NZ_CP048003.1_2063743_2066062_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|489aa|down_0|NZ_CP048003.1_2066537_2068004_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|276aa|down_1|NZ_CP048003.1_2068065_2068893_+	TIGR03729, acc_ester, putative phosphoesterase	NA|659aa|down_2|NZ_CP048003.1_2069221_2071198_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|266aa|down_3|NZ_CP048003.1_2071210_2072008_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|382aa|down_4|NZ_CP048003.1_2072114_2073260_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|234aa|down_5|NZ_CP048003.1_2073284_2073986_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|73aa|down_6|NZ_CP048003.1_2074121_2074340_+	NA	NA|489aa|down_7|NZ_CP048003.1_2074428_2075895_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|398aa|down_8|NZ_CP048003.1_2075898_2077092_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_9|NZ_CP048003.1_2077094_2077922_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase
