The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	2281664	732316	773413	2281664	integrase,transposase	Bacillus_phage(25.0%)	30	770099:770158	773495:773595
WP_161519494.1|732316_733864_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_161519495.1|734296_735889_+	MFS transporter	NA	NA	NA	NA	NA
WP_117773421.1|736245_736569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007057836.1|737249_738119_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_007054849.1|738122_738866_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_075662426.1|738869_740240_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_161519496.1|740490_741858_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA	NA
WP_080558530.1|741959_742805_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.9	4.4e-47
WP_041473894.1|742765_743326_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_161519497.1|743439_745029_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_161519498.1|746875_748594_-	sugar transferase	NA	NA	NA	NA	NA
WP_014485860.1|748869_749475_+	protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
WP_161519499.1|749846_750656_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_161519682.1|750652_751798_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_161519500.1|751826_752855_+	nitroreductase	NA	NA	NA	NA	NA
WP_161519501.1|752869_754006_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_161519502.1|754007_754640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161519503.1|754672_755629_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_161519504.1|755653_756229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161519505.1|756254_757424_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_161519506.1|757435_758335_+	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_161519507.1|758388_759882_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_161519508.1|759878_761300_+	coenzyme F420 hydrogenase	NA	NA	NA	NA	NA
WP_161519509.1|761376_762543_+	EpsG family protein	NA	NA	NA	NA	NA
WP_161519510.1|762582_763683_+	acyltransferase	NA	NA	NA	NA	NA
WP_032738804.1|764790_765552_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.9	1.9e-33
WP_007057038.1|765886_766672_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	39.2	6.7e-34
WP_161519511.1|766668_768171_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
770099:770158	attL	ACTCGGATTAAGCCGGGTTTGTTGTTAAGCCGGGGAACGGTTCGGGGTCTTGGTGGCTGG	NA	NA	NA	NA
WP_007053139.1|770195_771251_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VH95	Gordonia_phage	30.8	1.4e-05
WP_007053137.1|772210_773413_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
773495:773595	attR	CCAGCCACCAAGACCCCGAACCGTTCCCCGGCTTAACAACAAACCCGGCTTAATCCGAGTGGATGATCGGCGTCTCGCCGGGCCTGGGCGTGGCGCACGCG	NA	NA	NA	NA
>prophage 2
NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	2281664	1169829	1219482	2281664	protease,integrase,transposase	Agrobacterium_phage(14.29%)	39	1175298:1175315	1214514:1214531
WP_010081449.1|1169829_1170423_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	49.7	3.5e-43
WP_007052059.1|1170428_1171130_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	43.4	5.2e-38
WP_007052060.1|1171251_1172670_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	48.7	8.5e-112
WP_007052061.1|1173150_1174569_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	34.6	2.9e-43
WP_007052062.1|1174801_1175743_+	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	38.5	1.3e-20
1175298:1175315	attL	TCGCCGTCATCACCGGCG	NA	NA	NA	NA
WP_007052063.1|1175788_1176454_-	O-methyltransferase	NA	NA	NA	NA	NA
WP_013410969.1|1176547_1177513_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_161519548.1|1177608_1179474_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_117641424.1|1179530_1181231_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
WP_007052067.1|1181227_1182763_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_007053429.1|1182819_1183323_-	YraN family protein	NA	NA	NA	NA	NA
WP_007053428.1|1183559_1184432_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_007053427.1|1184905_1186222_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A0B5JD48	Pandoravirus	25.2	7.6e-14
WP_161519549.1|1186570_1187362_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	2.7e-30
WP_117711807.1|1187403_1190046_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_161519550.1|1190137_1190884_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_161519551.1|1190959_1193569_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_007052075.1|1193746_1195090_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_007052076.1|1195164_1195965_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_007052077.1|1195982_1197077_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_032682880.1|1197283_1198540_+|integrase	site-specific integrase	integrase	I3NLE2	Bifidobacterium_phage	44.7	6.6e-84
WP_161519552.1|1198536_1199424_+	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_014485723.1|1199720_1200188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161519553.1|1200909_1202352_-	AAA family ATPase	NA	M4I0K3	Staphylococcus_phage	30.7	7.3e-18
WP_007053416.1|1202435_1203257_-	phosphoesterase	NA	A0A166Y943	Gordonia_phage	25.8	5.8e-12
WP_007052084.1|1203738_1204104_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_007053413.1|1204710_1206762_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A2H4PQR6	Staphylococcus_phage	25.1	4.5e-05
WP_131219268.1|1207074_1208565_+	MFS transporter	NA	NA	NA	NA	NA
WP_161519554.1|1208602_1210303_-	serine/threonine protein kinase	NA	A0A2R8FF19	Brazilian_cedratvirus	25.8	8.0e-08
WP_007052092.1|1210364_1210805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022527555.1|1211238_1212783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007052094.1|1212836_1213073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161519555.1|1213156_1214320_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_007057130.1|1214439_1214994_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
1214514:1214531	attR	CGCCGGTGATGACGGCGA	NA	NA	NA	NA
WP_007053408.1|1215149_1215731_+	haloacid dehalogenase	NA	NA	NA	NA	NA
WP_007053407.1|1215781_1216612_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_161519556.1|1216716_1218006_+	nitrate reductase	NA	Q9KX94	Enterobacteria_phage	43.0	2.9e-82
WP_080558530.1|1218115_1218961_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.9	4.4e-47
WP_041473894.1|1218921_1219482_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP048001	Bifidobacterium longum strain CACC 517 chromosome, complete genome	2281664	1417149	1481734	2281664	protease,integrase,transposase,tRNA	Streptococcus_phage(41.18%)	59	1435604:1435642	1453677:1453715
WP_049136791.1|1417149_1418508_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_077735064.1|1419441_1419576_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002323342.1|1419576_1419798_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_077735065.1|1419878_1420604_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_095907023.1|1420708_1421005_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_095907024.1|1420923_1421427_+	antirestriction protein	NA	NA	NA	NA	NA
WP_002323345.1|1421444_1421948_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
WP_003865505.1|1422066_1422465_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	74.0	4.1e-48
WP_161519575.1|1422442_1424893_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.6	0.0e+00
WP_002606088.1|1424892_1427106_+	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	60.6	1.3e-188
WP_002606089.1|1427102_1428110_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	70.5	7.8e-136
WP_009264280.1|1428126_1429029_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.0	2.9e-81
WP_076627789.1|1429077_1429635_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076627788.1|1429812_1430508_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_077735071.1|1430555_1430792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007057038.1|1432673_1433459_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	39.2	6.7e-34
WP_161519576.1|1433455_1434958_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_007052886.1|1435166_1435379_+	hypothetical protein	NA	NA	NA	NA	NA
1435604:1435642	attL	GGTCGGGCCGGCGGGATTTGAACCCGCGACCCCTTGACC	NA	NA	NA	NA
WP_007052884.1|1435860_1436472_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_007052883.1|1436483_1436909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014485639.1|1436919_1438164_-	hypothetical protein	NA	A0A2K5B2C1	Erysipelothrix_phage	43.8	6.7e-36
WP_077422560.1|1438179_1439358_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_032682389.1|1439326_1439524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007052879.1|1440222_1440942_-	DUF4391 domain-containing protein	NA	NA	NA	NA	NA
WP_007052877.1|1442982_1443711_+	class C sortase	NA	NA	NA	NA	NA
WP_007052876.1|1443740_1443962_+	excisionase family DNA-binding protein	NA	NA	NA	NA	NA
WP_161519577.1|1444031_1444577_-|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
WP_007052874.1|1445409_1445664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007052873.1|1445687_1446407_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_007052872.1|1446536_1446884_-	RNA polymerase-binding protein RbpA	NA	NA	NA	NA	NA
WP_161519578.1|1446999_1449513_-	DEAD/DEAH box helicase	NA	M1HM79	Paramecium_bursaria_Chlorella_virus	33.6	7.1e-61
WP_014485629.1|1449525_1449843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011068113.1|1449853_1451767_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_014485627.1|1451906_1453436_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A1V0SLA1	Klosneuvirus	35.8	2.0e-42
WP_161519579.1|1453816_1455946_-	bifunctional cytidylate kinase/GTPase Der	NA	NA	NA	NA	NA
1453677:1453715	attR	GGTCGGGCCGGCGGGATTTGAACCCGCGACCCCTTGACC	NA	NA	NA	NA
WP_007052866.1|1455942_1456713_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_117712463.1|1456908_1457877_+	glycerol transporter	NA	NA	NA	NA	NA
WP_008783527.1|1457775_1458078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023658359.1|1458223_1459861_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	43.9	3.7e-58
WP_161519580.1|1459808_1461188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161519687.1|1461207_1462122_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
WP_007052861.1|1462118_1463321_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_007052860.1|1463417_1463999_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	41.5	1.5e-22
WP_010080657.1|1464062_1464482_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_007057107.1|1464564_1465629_-	Holliday junction branch migration DNA helicase RuvB	NA	M4QPR2	Synechococcus_phage	34.1	6.8e-05
WP_007057108.1|1465628_1466255_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_007055752.1|1466312_1466897_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_013140772.1|1466902_1467658_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_013140773.1|1467798_1468383_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_013410842.1|1468522_1470556_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.3	4.8e-108
WP_161519581.1|1471376_1472210_+	PAC2 family protein	NA	NA	NA	NA	NA
WP_007052850.1|1472366_1473251_-	undecaprenyl-diphosphatase UppP	NA	NA	NA	NA	NA
WP_007054285.1|1473395_1474187_+	phosphotransferase	NA	NA	NA	NA	NA
WP_095347046.1|1474232_1475378_-	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	28.6	4.7e-20
WP_007054286.1|1475433_1476552_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_011068109.1|1476926_1479035_+	transketolase	NA	NA	NA	NA	NA
WP_007054288.1|1479155_1480259_+	transaldolase	NA	NA	NA	NA	NA
WP_080558530.1|1480367_1481213_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.9	4.4e-47
WP_041473894.1|1481173_1481734_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
