assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931415.1_ASM993141v1	NZ_CP040931	Bifidobacterium breve strain JR01 chromosome, complete genome	1	117598-117674	1	CRISPRCasFinder	no		WYL,cas3,DEDDh	Orphan	CGGGGTGGTTCTTCGGTTGGTTGGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh	NA,NA|90aa|down_9|NZ_CP040931.1_133933_134203_-	NA|916aa|up_9|NZ_CP040931.1_105216_107964_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|256aa|up_8|NZ_CP040931.1_108129_108897_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|126aa|up_7|NZ_CP040931.1_108992_109370_-	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|238aa|up_6|NZ_CP040931.1_109441_110155_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|449aa|up_5|NZ_CP040931.1_110557_111904_+	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|339aa|up_4|NZ_CP040931.1_112111_113128_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|285aa|up_3|NZ_CP040931.1_113498_114353_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|up_2|NZ_CP040931.1_114352_115195_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|202aa|up_1|NZ_CP040931.1_115345_115951_+	pfam04854, DUF624, Protein of unknown function, DUF624	NA|491aa|up_0|NZ_CP040931.1_116002_117475_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|234aa|down_0|NZ_CP040931.1_117956_118658_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|1207aa|down_1|NZ_CP040931.1_118805_122426_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|508aa|down_2|NZ_CP040931.1_122678_124202_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|174aa|down_3|NZ_CP040931.1_125127_125649_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|623aa|down_4|NZ_CP040931.1_125832_127701_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|610aa|down_5|NZ_CP040931.1_127832_129662_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|314aa|down_6|NZ_CP040931.1_129670_130612_-	pfam02424, ApbE, ApbE family	NA|462aa|down_7|NZ_CP040931.1_130749_132135_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|340aa|down_8|NZ_CP040931.1_132794_133814_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|90aa|down_9|NZ_CP040931.1_133933_134203_-	NA
GCF_009931415.1_ASM993141v1	NZ_CP040931	Bifidobacterium breve strain JR01 chromosome, complete genome	2	1169634-1169812	2	CRISPRCasFinder	no		WYL,cas3,DEDDh	Orphan	GCCACCATCGACCCGAAAACCGG	23	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh	NA|387aa|up_9|NZ_CP040931.1_1160854_1162015_+,NA|205aa|up_8|NZ_CP040931.1_1162038_1162653_+,NA|195aa|up_6|NZ_CP040931.1_1163591_1164176_+,NA|141aa|up_5|NZ_CP040931.1_1164172_1164595_+,NA|133aa|up_4|NZ_CP040931.1_1164587_1164986_+,NA|139aa|up_3|NZ_CP040931.1_1164982_1165399_+,NA|178aa|up_2|NZ_CP040931.1_1165471_1166005_+,NA|165aa|up_1|NZ_CP040931.1_1166180_1166675_+,NA|99aa|up_0|NZ_CP040931.1_1166746_1167043_+,NA|299aa|down_0|NZ_CP040931.1_1170394_1171291_+,NA|140aa|down_1|NZ_CP040931.1_1171355_1171775_+,NA|179aa|down_4|NZ_CP040931.1_1174313_1174850_+,NA|403aa|down_5|NZ_CP040931.1_1174849_1176058_+,NA|103aa|down_7|NZ_CP040931.1_1180296_1180605_+,NA|130aa|down_8|NZ_CP040931.1_1180604_1180994_+	NA|387aa|up_9|NZ_CP040931.1_1160854_1162015_+	NA	NA|205aa|up_8|NZ_CP040931.1_1162038_1162653_+	NA	NA|286aa|up_7|NZ_CP040931.1_1162669_1163527_+	TIGR04387, hypothetical_protein, major capsid protein, N4-gp56 family	NA|195aa|up_6|NZ_CP040931.1_1163591_1164176_+	NA	NA|141aa|up_5|NZ_CP040931.1_1164172_1164595_+	NA	NA|133aa|up_4|NZ_CP040931.1_1164587_1164986_+	NA	NA|139aa|up_3|NZ_CP040931.1_1164982_1165399_+	NA	NA|178aa|up_2|NZ_CP040931.1_1165471_1166005_+	NA	NA|165aa|up_1|NZ_CP040931.1_1166180_1166675_+	NA	NA|99aa|up_0|NZ_CP040931.1_1166746_1167043_+	NA	NA|299aa|down_0|NZ_CP040931.1_1170394_1171291_+	NA	NA|140aa|down_1|NZ_CP040931.1_1171355_1171775_+	NA	NA|494aa|down_2|NZ_CP040931.1_1171913_1173395_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP040931.1_1173397_1174183_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|179aa|down_4|NZ_CP040931.1_1174313_1174850_+	NA	NA|403aa|down_5|NZ_CP040931.1_1174849_1176058_+	NA	NA|1403aa|down_6|NZ_CP040931.1_1176068_1180277_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|103aa|down_7|NZ_CP040931.1_1180296_1180605_+	NA	NA|130aa|down_8|NZ_CP040931.1_1180604_1180994_+	NA	NA|249aa|down_9|NZ_CP040931.1_1181070_1181817_+	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase
GCF_009931415.1_ASM993141v1	NZ_CP040931	Bifidobacterium breve strain JR01 chromosome, complete genome	3	1904482-1904786	3	CRISPRCasFinder	no		WYL,cas3,DEDDh	Orphan	TCGGAACGACGGCGACGCGGACG	23	0	0	NA	NA	NA	5	5	Orphan	WYL,cas3,DEDDh	NA,NA|229aa|down_1|NZ_CP040931.1_1907748_1908435_-,NA|225aa|down_2|NZ_CP040931.1_1909515_1910190_-,NA|177aa|down_5|NZ_CP040931.1_1916464_1916995_-	NA|158aa|up_9|NZ_CP040931.1_1892726_1893200_+	PRK14520, rpsP, 30S ribosomal protein S16; Provisional	NA|78aa|up_8|NZ_CP040931.1_1893223_1893457_+	PRK02821, PRK02821, RNA-binding protein	NA|205aa|up_7|NZ_CP040931.1_1893479_1894094_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|352aa|up_6|NZ_CP040931.1_1894167_1895223_-	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|288aa|up_5|NZ_CP040931.1_1895490_1896354_-	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|81aa|up_4|NZ_CP040931.1_1898554_1898797_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|752aa|up_3|NZ_CP040931.1_1898796_1901052_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|196aa|up_2|NZ_CP040931.1_1901117_1901705_-	pfam04011, LemA, LemA family	NA|304aa|up_1|NZ_CP040931.1_1902166_1903078_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|237aa|up_0|NZ_CP040931.1_1903215_1903926_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|90aa|down_0|NZ_CP040931.1_1907349_1907619_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|229aa|down_1|NZ_CP040931.1_1907748_1908435_-	NA	NA|225aa|down_2|NZ_CP040931.1_1909515_1910190_-	NA	NA|516aa|down_3|NZ_CP040931.1_1910297_1911845_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|1243aa|down_4|NZ_CP040931.1_1912052_1915781_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|177aa|down_5|NZ_CP040931.1_1916464_1916995_-	NA	NA|233aa|down_6|NZ_CP040931.1_1917482_1918181_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|150aa|down_7|NZ_CP040931.1_1918867_1919317_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|185aa|down_8|NZ_CP040931.1_1919606_1920161_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|446aa|down_9|NZ_CP040931.1_1920391_1921729_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)
GCF_009931415.1_ASM993141v1	NZ_CP040931	Bifidobacterium breve strain JR01 chromosome, complete genome	4	2183129-2183465	4	CRISPRCasFinder	no		WYL,cas3,DEDDh	Orphan	CCTCAGCGGGGCAAAACCACCAGTA	25	0	0	NA	NA	NA	6	6	Orphan	WYL,cas3,DEDDh	NA,NA	NA|629aa|up_9|NZ_CP040931.1_2161974_2163861_+	cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|739aa|up_8|NZ_CP040931.1_2164117_2166334_+	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|320aa|up_7|NZ_CP040931.1_2166637_2167597_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|612aa|up_6|NZ_CP040931.1_2167853_2169689_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|1469aa|up_5|NZ_CP040931.1_2169793_2174200_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|344aa|up_4|NZ_CP040931.1_2175103_2176135_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|605aa|up_3|NZ_CP040931.1_2176406_2178221_+	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|351aa|up_2|NZ_CP040931.1_2178408_2179461_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|up_1|NZ_CP040931.1_2179888_2180941_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|456aa|up_0|NZ_CP040931.1_2181338_2182706_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_0|NZ_CP040931.1_2183693_2184746_-	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|545aa|down_1|NZ_CP040931.1_2184815_2186450_-	cd06174, MFS, Major Facilitator Superfamily	NA|509aa|down_2|NZ_CP040931.1_2186654_2188181_-	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|362aa|down_3|NZ_CP040931.1_2188607_2189693_-	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|132aa|down_4|NZ_CP040931.1_2189967_2190363_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|348aa|down_5|NZ_CP040931.1_2190362_2191406_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|528aa|down_6|NZ_CP040931.1_2191593_2193177_-	cd01031, EriC, ClC chloride channel EriC	NA|429aa|down_7|NZ_CP040931.1_2193200_2194487_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|356aa|down_8|NZ_CP040931.1_2194654_2195722_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|312aa|down_9|NZ_CP040931.1_2195784_2196720_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
