assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931295.1_ASM993129v1	NZ_CP034938	Pectobacterium odoriferum strain JK2.1 chromosome, complete genome	1	441146-442456	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,21,21	21	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA,NA|153aa|down_0|NZ_CP034938.1_442637_443096_+	cas3|906aa|up_9|NZ_CP034938.1_431000_433718_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|158aa|up_8|NZ_CP034938.1_433707_434181_-	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|121aa|up_7|NZ_CP034938.1_434184_434547_-	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	cas8e|523aa|up_6|NZ_CP034938.1_435160_436729_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|216aa|up_5|NZ_CP034938.1_436712_437360_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|356aa|up_4|NZ_CP034938.1_437363_438431_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|245aa|up_3|NZ_CP034938.1_438440_439175_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NZ_CP034938.1_439174_439822_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP034938.1_439849_440767_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP034938.1_440767_441061_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|153aa|down_0|NZ_CP034938.1_442637_443096_+	NA	NA|419aa|down_1|NZ_CP034938.1_444018_445275_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|149aa|down_2|NZ_CP034938.1_445427_445874_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|156aa|down_3|NZ_CP034938.1_445883_446351_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|218aa|down_4|NZ_CP034938.1_446439_447093_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|155aa|down_5|NZ_CP034938.1_447104_447569_-	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|713aa|down_6|NZ_CP034938.1_447650_449789_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|246aa|down_7|NZ_CP034938.1_450191_450929_-	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit	NA|274aa|down_8|NZ_CP034938.1_450952_451774_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|310aa|down_9|NZ_CP034938.1_451770_452700_-	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif
GCF_009931295.1_ASM993129v1	NZ_CP034938	Pectobacterium odoriferum strain JK2.1 chromosome, complete genome	2	814470-814572	2	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	GTGGGCAGGGATAGCCCACGATAAAAAAT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA,NA|131aa|down_3|NZ_CP034938.1_820086_820479_+,NA|125aa|down_9|NZ_CP034938.1_828713_829088_+	NA|284aa|up_9|NZ_CP034938.1_792588_793440_+	sd00006, TPR, Tetratricopeptide repeat	NA|191aa|up_8|NZ_CP034938.1_793439_794012_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|211aa|up_7|NZ_CP034938.1_794004_794637_+	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|540aa|up_6|NZ_CP034938.1_794818_796438_+	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like	NA|3189aa|up_5|NZ_CP034938.1_796496_806063_+	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|597aa|up_4|NZ_CP034938.1_806317_808108_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|258aa|up_3|NZ_CP034938.1_808107_808881_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|453aa|up_2|NZ_CP034938.1_808877_810236_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|710aa|up_1|NZ_CP034938.1_810238_812368_+	pfam13437, HlyD_3, HlyD family secretion protein	NA|566aa|up_0|NZ_CP034938.1_812730_814428_+	cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase	NA|553aa|down_0|NZ_CP034938.1_815133_816792_-	PRK09395, actP, cation/acetate symporter ActP	NA|104aa|down_1|NZ_CP034938.1_816788_817100_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|654aa|down_2|NZ_CP034938.1_817224_819186_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|131aa|down_3|NZ_CP034938.1_820086_820479_+	NA	NA|790aa|down_4|NZ_CP034938.1_821216_823586_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|175aa|down_5|NZ_CP034938.1_823758_824283_+	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|316aa|down_6|NZ_CP034938.1_824279_825227_+	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|337aa|down_7|NZ_CP034938.1_825396_826407_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|509aa|down_8|NZ_CP034938.1_826803_828330_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|125aa|down_9|NZ_CP034938.1_828713_829088_+	NA
GCF_009931295.1_ASM993129v1	NZ_CP034938	Pectobacterium odoriferum strain JK2.1 chromosome, complete genome	3	2224887-2224991	3	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	CAAGCGACGTTGTAAAATGCCTTTGGCATTTTATT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA,NA|161aa|down_2|NZ_CP034938.1_2227055_2227538_+,NA|90aa|down_3|NZ_CP034938.1_2227975_2228245_-	NA|172aa|up_9|NZ_CP034938.1_2211884_2212400_-	pfam02794, HlyC, RTX toxin acyltransferase family	NA|581aa|up_8|NZ_CP034938.1_2212411_2214154_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|466aa|up_7|NZ_CP034938.1_2214525_2215923_+	COG3106, COG3106, Predicted ATPase [General function prediction only]	NA|348aa|up_6|NZ_CP034938.1_2215919_2216963_+	PRK05415, PRK05415, hypothetical protein; Provisional	NA|515aa|up_5|NZ_CP034938.1_2217122_2218667_+	cd05678, M20_dipept_like, uncharacterized M20 dipeptidase	NA|523aa|up_4|NZ_CP034938.1_2218803_2220372_+	PRK10820, PRK10820, transcriptional regulator TyrR	NA|168aa|up_3|NZ_CP034938.1_2220424_2220928_-	PRK00522, tpx, thiol peroxidase	NA|240aa|up_2|NZ_CP034938.1_2221007_2221727_-	PRK10602, PRK10602, murein tripeptide amidase MpaA	NA|539aa|up_1|NZ_CP034938.1_2221891_2223508_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|328aa|up_0|NZ_CP034938.1_2223632_2224616_+	PRK09546, zntB, zinc transporter ZntB	NA|59aa|down_0|NZ_CP034938.1_2225109_2225286_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|312aa|down_1|NZ_CP034938.1_2225407_2226343_-	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|161aa|down_2|NZ_CP034938.1_2227055_2227538_+	NA	NA|90aa|down_3|NZ_CP034938.1_2227975_2228245_-	NA	NA|97aa|down_4|NZ_CP034938.1_2228825_2229116_+	pfam03891, DUF333, Domain of unknown function (DUF333)	NA|331aa|down_5|NZ_CP034938.1_2229149_2230142_-	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains	NA|518aa|down_6|NZ_CP034938.1_2230253_2231807_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|518aa|down_7|NZ_CP034938.1_2232153_2233707_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|864aa|down_8|NZ_CP034938.1_2234078_2236670_+	PRK10695, PRK10695, YdbH family protein	NA|78aa|down_9|NZ_CP034938.1_2236685_2236919_+	pfam13617, Lipoprotein_19, YnbE-like lipoprotein
GCF_009931295.1_ASM993129v1	NZ_CP034938	Pectobacterium odoriferum strain JK2.1 chromosome, complete genome	4	4054600-4055047	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,7,7	7	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|213aa|up_0|NZ_CP034938.1_4053489_4054128_+,NA|286aa|down_7|NZ_CP034938.1_4060364_4061222_-	NA|303aa|up_9|NZ_CP034938.1_4043712_4044621_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|294aa|up_8|NZ_CP034938.1_4044728_4045610_+	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|219aa|up_7|NZ_CP034938.1_4045597_4046254_+	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|271aa|up_6|NZ_CP034938.1_4046456_4047269_+	sd00010, SLR, Sel1-like repeat	NA|341aa|up_5|NZ_CP034938.1_4047902_4048925_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|96aa|up_4|NZ_CP034938.1_4049092_4049380_+	PRK09459, pspG, envelope stress response protein PspG	NA|328aa|up_3|NZ_CP034938.1_4049735_4050719_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|469aa|up_2|NZ_CP034938.1_4050966_4052373_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|361aa|up_1|NZ_CP034938.1_4052414_4053497_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|213aa|up_0|NZ_CP034938.1_4053489_4054128_+	NA	NA|160aa|down_0|NZ_CP034938.1_4055149_4055629_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|down_1|NZ_CP034938.1_4055879_4056494_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_2|NZ_CP034938.1_4056558_4057752_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|168aa|down_3|NZ_CP034938.1_4057922_4058426_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|160aa|down_4|NZ_CP034938.1_4058544_4059024_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|136aa|down_5|NZ_CP034938.1_4059076_4059484_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|135aa|down_6|NZ_CP034938.1_4059967_4060372_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|286aa|down_7|NZ_CP034938.1_4060364_4061222_-	NA	NA|140aa|down_8|NZ_CP034938.1_4062535_4062955_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|945aa|down_9|NZ_CP034938.1_4062970_4065805_-	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCF_009931295.1_ASM993129v1	NZ_CP034938	Pectobacterium odoriferum strain JK2.1 chromosome, complete genome	5	4061464-4062509	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	TTTCTAAGCTGCCTATACGGCAGTGAAC,TNNNCTGCCNNNNNGGCAGNNNA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,23,28	0	0	NA	NA	I-F:NA:I-F	9,17,7	17	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|213aa|up_8|NZ_CP034938.1_4053489_4054128_+,NA|286aa|up_0|NZ_CP034938.1_4060364_4061222_-,NA|94aa|down_3|NZ_CP034938.1_4067412_4067694_+,NA|204aa|down_7|NZ_CP034938.1_4080341_4080953_-	NA|361aa|up_9|NZ_CP034938.1_4052414_4053497_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|213aa|up_8|NZ_CP034938.1_4053489_4054128_+	NA	NA|160aa|up_7|NZ_CP034938.1_4055149_4055629_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_6|NZ_CP034938.1_4055879_4056494_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_5|NZ_CP034938.1_4056558_4057752_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|168aa|up_4|NZ_CP034938.1_4057922_4058426_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|160aa|up_3|NZ_CP034938.1_4058544_4059024_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|136aa|up_2|NZ_CP034938.1_4059076_4059484_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|135aa|up_1|NZ_CP034938.1_4059967_4060372_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|286aa|up_0|NZ_CP034938.1_4060364_4061222_-	NA	NA|140aa|down_0|NZ_CP034938.1_4062535_4062955_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|945aa|down_1|NZ_CP034938.1_4062970_4065805_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|182aa|down_2|NZ_CP034938.1_4066125_4066671_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|94aa|down_3|NZ_CP034938.1_4067412_4067694_+	NA	NA|2460aa|down_4|NZ_CP034938.1_4068710_4076090_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|332aa|down_5|NZ_CP034938.1_4076259_4077255_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|478aa|down_6|NZ_CP034938.1_4077378_4078812_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|204aa|down_7|NZ_CP034938.1_4080341_4080953_-	NA	NA|153aa|down_8|NZ_CP034938.1_4081199_4081658_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|346aa|down_9|NZ_CP034938.1_4081724_4082762_-	COG1609, PurR, Transcriptional regulators [Transcription]
