assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009931135.1_ASM993113v1	NZ_CP047963	Aeromonas media strain MC64 plasmid pMC64A, complete sequence	1	58641-60361	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DinG,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16	c2c9_V-U4,cas14j,DinG,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,WYL,PD-DExK	Type III-A,Type III-B,Type III-D,Type III-C	GTCTTAATCCCTTTATTAGCAGGGCGAACTTCTGAC,GTCTTAATCCCTTTATTAGCAGGGCGAACTTCTGAC,GTCTTAATCCCTTTATTAGCAGGGCGAACTTCTGAC	36,36,36	0	0	NA	NA	NA:NA:NA	24,24,23	24	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA|87aa|down_1|NZ_CP047963.1_61966_62227_+,NA|87aa|down_2|NZ_CP047963.1_62371_62632_+	NA|398aa|up_9|NZ_CP047963.1_45386_46580_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|148aa|up_8|NZ_CP047963.1_47381_47825_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|420aa|up_7|NZ_CP047963.1_47805_49065_+	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|163aa|up_6|NZ_CP047963.1_49334_49823_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|272aa|up_5|NZ_CP047963.1_49890_50706_-	pfam07514, TraI_2, Putative helicase	DinG|744aa|up_4|NZ_CP047963.1_51069_53301_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|317aa|up_3|NZ_CP047963.1_53516_54467_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|518aa|up_2|NZ_CP047963.1_54862_56416_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NZ_CP047963.1_56438_57194_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|405aa|up_0|NZ_CP047963.1_57325_58540_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|366aa|down_0|NZ_CP047963.1_60712_61810_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|87aa|down_1|NZ_CP047963.1_61966_62227_+	NA	NA|87aa|down_2|NZ_CP047963.1_62371_62632_+	NA	cas2|96aa|down_3|NZ_CP047963.1_62728_63016_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_4|NZ_CP047963.1_63089_64082_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|down_5|NZ_CP047963.1_64053_64329_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|344aa|down_6|NZ_CP047963.1_64348_65380_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	cmr1gr7|392aa|down_7|NZ_CP047963.1_65603_66779_+	pfam03787, RAMPs, RAMP superfamily	cas10|661aa|down_8|NZ_CP047963.1_66775_68758_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|379aa|down_9|NZ_CP047963.1_68751_69888_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3
GCF_009931135.1_ASM993113v1	NZ_CP047963	Aeromonas media strain MC64 plasmid pMC64A, complete sequence	2	134386-134493	2	CRISPRCasFinder	no	cas14j,c2c9_V-U4	c2c9_V-U4,cas14j,DinG,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,WYL,PD-DExK	Unclear	CCTCCGCCTATCTTGTCCGAAGGA	24	0	0	NA	NA	NA	1	1	TypeV	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA|208aa|down_0|NZ_CP047963.1_134780_135404_+,NA|205aa|down_1|NZ_CP047963.1_135448_136063_+,NA|105aa|down_8|NZ_CP047963.1_144896_145211_+,NA|48aa|down_9|NZ_CP047963.1_145680_145824_-	NA|108aa|up_9|NZ_CP047963.1_125599_125923_-	PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional	NA|178aa|up_8|NZ_CP047963.1_125959_126493_-	PRK01749, PRK01749, disulfide bond formation protein DsbB	NA|287aa|up_7|NZ_CP047963.1_126508_127369_-	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain	NA|146aa|up_6|NZ_CP047963.1_127358_127796_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|114aa|up_5|NZ_CP047963.1_127845_128187_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|570aa|up_4|NZ_CP047963.1_128216_129926_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|328aa|up_3|NZ_CP047963.1_129961_130945_-	cd09323, TDT_SLAC1_like, Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1)	NA|178aa|up_2|NZ_CP047963.1_131327_131861_-	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|107aa|up_1|NZ_CP047963.1_131835_132156_-	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only]	NA|423aa|up_0|NZ_CP047963.1_132984_134253_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|208aa|down_0|NZ_CP047963.1_134780_135404_+	NA	NA|205aa|down_1|NZ_CP047963.1_135448_136063_+	NA	NA|1018aa|down_2|NZ_CP047963.1_136123_139177_+	pfam07514, TraI_2, Putative helicase	NA|201aa|down_3|NZ_CP047963.1_139431_140034_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|170aa|down_4|NZ_CP047963.1_140182_140692_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	cas14j|389aa|down_5|NZ_CP047963.1_140688_141855_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|95aa|down_6|NZ_CP047963.1_142411_142696_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|111aa|down_7|NZ_CP047963.1_142697_143030_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|105aa|down_8|NZ_CP047963.1_144896_145211_+	NA	NA|48aa|down_9|NZ_CP047963.1_145680_145824_-	NA
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	1	25993-26131	1	CRISPRCasFinder	no	WYL	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Unclear	GCGCTGGTGGGATGAGGCGTGGGAACGCAGTTGTTGAAGC	40	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA	NA|376aa|up_9|NZ_CP047962.1_12824_13952_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|228aa|up_8|NZ_CP047962.1_13956_14640_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|863aa|up_7|NZ_CP047962.1_14703_17292_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|172aa|up_6|NZ_CP047962.1_17428_17944_-	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|688aa|up_5|NZ_CP047962.1_18199_20263_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|560aa|up_4|NZ_CP047962.1_20330_22010_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|148aa|up_3|NZ_CP047962.1_22340_22784_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|288aa|up_2|NZ_CP047962.1_22974_23838_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|335aa|up_1|NZ_CP047962.1_23849_24854_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|263aa|up_0|NZ_CP047962.1_24905_25694_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|450aa|down_0|NZ_CP047962.1_26165_27515_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|653aa|down_1|NZ_CP047962.1_27591_29550_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|1027aa|down_2|NZ_CP047962.1_29671_32752_-	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit	NA|369aa|down_3|NZ_CP047962.1_32767_33874_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|197aa|down_4|NZ_CP047962.1_33870_34461_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|158aa|down_5|NZ_CP047962.1_35366_35840_+	smart00458, RICIN, Ricin-type beta-trefoil	NA|268aa|down_6|NZ_CP047962.1_35902_36706_-	PRK10976, PRK10976, putative hydrolase; Provisional	NA|347aa|down_7|NZ_CP047962.1_36901_37942_-	PRK10749, PRK10749, lysophospholipase L2; Provisional	NA|249aa|down_8|NZ_CP047962.1_37931_38678_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|706aa|down_9|NZ_CP047962.1_38836_40954_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	2	1684859-1684980	2	CRISPRCasFinder	no	DinG	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Type IV-A	ATAGATCCCCTGTGCGACGCCATCGCCAAGGTG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA|228aa|up_8|NZ_CP047962.1_1670827_1671511_-,NA|314aa|up_0|NZ_CP047962.1_1682619_1683561_+,NA	NA|258aa|up_9|NZ_CP047962.1_1670009_1670783_-	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|228aa|up_8|NZ_CP047962.1_1670827_1671511_-	NA	NA|456aa|up_7|NZ_CP047962.1_1671561_1672929_-	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|317aa|up_6|NZ_CP047962.1_1674670_1675621_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|383aa|up_5|NZ_CP047962.1_1675794_1676943_+	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|299aa|up_4|NZ_CP047962.1_1677102_1677999_-	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	NA|220aa|up_3|NZ_CP047962.1_1678072_1678732_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	DinG|691aa|up_2|NZ_CP047962.1_1678876_1680949_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|358aa|up_1|NZ_CP047962.1_1681332_1682406_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|314aa|up_0|NZ_CP047962.1_1682619_1683561_+	NA	NA|446aa|down_0|NZ_CP047962.1_1685114_1686452_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|502aa|down_1|NZ_CP047962.1_1686500_1688006_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|165aa|down_2|NZ_CP047962.1_1688132_1688627_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|173aa|down_3|NZ_CP047962.1_1688620_1689139_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|754aa|down_4|NZ_CP047962.1_1689167_1691429_+	PRK11539, PRK11539, ComEC family competence protein; Provisional	NA|590aa|down_5|NZ_CP047962.1_1691617_1693387_+	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|332aa|down_6|NZ_CP047962.1_1693386_1694382_+	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|67aa|down_7|NZ_CP047962.1_1694532_1694733_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|250aa|down_8|NZ_CP047962.1_1694729_1695479_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|215aa|down_9|NZ_CP047962.1_1695689_1696334_+	PRK09483, PRK09483, response regulator; Provisional
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	3	1691460-1691583	3	CRISPRCasFinder	no	DinG	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Type IV-A	ATGGCAACGCTTGGTGTAATCCTGCGCTTTGGCTAG	36	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA|314aa|up_6|NZ_CP047962.1_1682619_1683561_+,NA|119aa|down_8|NZ_CP047962.1_1701342_1701699_+	NA|220aa|up_9|NZ_CP047962.1_1678072_1678732_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	DinG|691aa|up_8|NZ_CP047962.1_1678876_1680949_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|358aa|up_7|NZ_CP047962.1_1681332_1682406_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|314aa|up_6|NZ_CP047962.1_1682619_1683561_+	NA	NA|397aa|up_5|NZ_CP047962.1_1683706_1684897_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|446aa|up_4|NZ_CP047962.1_1685114_1686452_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|502aa|up_3|NZ_CP047962.1_1686500_1688006_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|165aa|up_2|NZ_CP047962.1_1688132_1688627_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|173aa|up_1|NZ_CP047962.1_1688620_1689139_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|754aa|up_0|NZ_CP047962.1_1689167_1691429_+	PRK11539, PRK11539, ComEC family competence protein; Provisional	NA|590aa|down_0|NZ_CP047962.1_1691617_1693387_+	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|332aa|down_1|NZ_CP047962.1_1693386_1694382_+	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|67aa|down_2|NZ_CP047962.1_1694532_1694733_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|250aa|down_3|NZ_CP047962.1_1694729_1695479_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|215aa|down_4|NZ_CP047962.1_1695689_1696334_+	PRK09483, PRK09483, response regulator; Provisional	NA|618aa|down_5|NZ_CP047962.1_1696445_1698299_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|185aa|down_6|NZ_CP047962.1_1698592_1699147_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|402aa|down_7|NZ_CP047962.1_1699989_1701195_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|119aa|down_8|NZ_CP047962.1_1701342_1701699_+	NA	NA|105aa|down_9|NZ_CP047962.1_1701691_1702006_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	4	3102605-3102744	4	CRISPRCasFinder	no	c2c9_V-U4	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Type V-U4	TCAGCCTCCGGTCGTTACTGGAAGGAGAGGGAAGAAGGCGGC	42	0	0	NA	NA	NA	1	1	TypeV-U4	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA	NA|446aa|up_9|NZ_CP047962.1_3092172_3093510_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|550aa|up_8|NZ_CP047962.1_3093632_3095282_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|219aa|up_7|NZ_CP047962.1_3095551_3096208_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|409aa|up_6|NZ_CP047962.1_3096566_3097793_+	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional	NA|252aa|up_5|NZ_CP047962.1_3097789_3098545_+	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|260aa|up_4|NZ_CP047962.1_3098610_3099390_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|352aa|up_3|NZ_CP047962.1_3099460_3100516_-	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein	NA|227aa|up_2|NZ_CP047962.1_3100512_3101193_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|243aa|up_1|NZ_CP047962.1_3101302_3102031_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|162aa|up_0|NZ_CP047962.1_3102115_3102601_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|82aa|down_0|NZ_CP047962.1_3102800_3103046_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|165aa|down_1|NZ_CP047962.1_3103042_3103537_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|176aa|down_2|NZ_CP047962.1_3103618_3104146_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|197aa|down_3|NZ_CP047962.1_3104367_3104958_-	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family	NA|152aa|down_4|NZ_CP047962.1_3104969_3105425_-	pfam03892, NapB, Nitrate reductase cytochrome c-type subunit (NapB)	NA|292aa|down_5|NZ_CP047962.1_3105424_3106300_-	PRK09477, napH, quinol dehydrogenase membrane component; Provisional	NA|245aa|down_6|NZ_CP047962.1_3106296_3107031_-	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional	NA|830aa|down_7|NZ_CP047962.1_3107044_3109534_-	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA	NA|89aa|down_8|NZ_CP047962.1_3109660_3109927_-	pfam03927, NapD, NapD protein	NA|170aa|down_9|NZ_CP047962.1_3109959_3110469_-	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	5	3190528-3190632	5	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Orphan	CGATCAGAGCAGCGCGGCCACTTCGTCGGAG	31	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA|98aa|down_9|NZ_CP047962.1_3201801_3202095_-	NA|175aa|up_9|NZ_CP047962.1_3177014_3177539_+	PRK09267, PRK09267, flavodoxin FldA; Validated	NA|167aa|up_8|NZ_CP047962.1_3177585_3178086_-	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|143aa|up_7|NZ_CP047962.1_3178330_3178759_+	PRK09462, fur, ferric uptake regulator; Provisional	NA|554aa|up_6|NZ_CP047962.1_3178876_3180538_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|888aa|up_5|NZ_CP047962.1_3180877_3183541_-	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|485aa|up_4|NZ_CP047962.1_3183663_3185118_-	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component	NA|267aa|up_3|NZ_CP047962.1_3185389_3186190_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|382aa|up_2|NZ_CP047962.1_3186199_3187345_+	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional	NA|405aa|up_1|NZ_CP047962.1_3187349_3188564_+	pfam00480, ROK, ROK family	NA|542aa|up_0|NZ_CP047962.1_3188632_3190258_-	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional	NA|593aa|down_0|NZ_CP047962.1_3191413_3193192_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|287aa|down_1|NZ_CP047962.1_3193624_3194485_+	PRK10302, PRK10302, hypothetical protein; Provisional	NA|247aa|down_2|NZ_CP047962.1_3194868_3195609_+	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase	NA|326aa|down_3|NZ_CP047962.1_3195605_3196583_+	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|263aa|down_4|NZ_CP047962.1_3196635_3197424_+	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]	NA|513aa|down_5|NZ_CP047962.1_3197427_3198966_+	pfam14402, 7TM_transglut, 7 transmembrane helices usually fused to an inactive transglutaminase	NA|322aa|down_6|NZ_CP047962.1_3198969_3199935_+	TIGR02291, conserved_protein_of_unknown_function, alpha-L-glutamate ligase-related protein	NA|305aa|down_7|NZ_CP047962.1_3200239_3201154_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|149aa|down_8|NZ_CP047962.1_3201271_3201718_+	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|98aa|down_9|NZ_CP047962.1_3201801_3202095_-	NA
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	6	3595842-3595917	6	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Orphan	GCACTTATTATCTGAATTCCCGG	23	1	10	3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894|3595865-3595894	NZ_CP047963.1_40232-40261|NZ_CP047962.1_1621348-1621377|NZ_CP047962.1_2270945-2270974|NZ_CP047962.1_2848664-2848693|NZ_CP047962.1_2863947-2863976|NZ_CP047962.1_2900198-2900227|NZ_CP047962.1_4229931-4229960|NZ_CP047962.1_792225-792196|NZ_CP047962.1_2520663-2520634|NZ_CP047962.1_3765870-3765841	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA,NA	NA|277aa|up_9|NZ_CP047962.1_3585940_3586771_-	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	NA|200aa|up_8|NZ_CP047962.1_3586919_3587519_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|391aa|up_7|NZ_CP047962.1_3587844_3589017_+	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional	NA|142aa|up_6|NZ_CP047962.1_3589173_3589599_-	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown]	NA|207aa|up_5|NZ_CP047962.1_3589619_3590240_-	pfam17680, FlgO, FlgO protein	NA|385aa|up_4|NZ_CP047962.1_3590524_3591679_+	pfam16539, FlgT_M, Flagellar assembly protein T, middle domain	NA|250aa|up_3|NZ_CP047962.1_3591932_3592682_-	PRK09360, lamB, maltoporin LamB	NA|306aa|up_2|NZ_CP047962.1_3592766_3593684_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|316aa|up_1|NZ_CP047962.1_3593776_3594724_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_0|NZ_CP047962.1_3594810_3595758_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|321aa|down_0|NZ_CP047962.1_3596863_3597826_-	cd18820, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins similar to Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|367aa|down_1|NZ_CP047962.1_3597942_3599043_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|276aa|down_2|NZ_CP047962.1_3599115_3599943_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_3|NZ_CP047962.1_3599944_3600835_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|428aa|down_4|NZ_CP047962.1_3600901_3602185_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|359aa|down_5|NZ_CP047962.1_3602251_3603328_-	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism]	NA|56aa|down_6|NZ_CP047962.1_3603630_3603798_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|108aa|down_7|NZ_CP047962.1_3603842_3604166_+	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	NA|290aa|down_8|NZ_CP047962.1_3604162_3605032_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|547aa|down_9|NZ_CP047962.1_3605305_3606946_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	7	4206609-4206704	7	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Orphan	ACGTGCTCGGCCGGGCCCGTCAT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA|135aa|up_3|NZ_CP047962.1_4203617_4204022_-,NA	NA|413aa|up_9|NZ_CP047962.1_4196539_4197778_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|388aa|up_8|NZ_CP047962.1_4197805_4198969_+	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|172aa|up_7|NZ_CP047962.1_4198976_4199492_-	PRK11648, PRK11648, metal-dependent hydrolase	NA|543aa|up_6|NZ_CP047962.1_4199932_4201561_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|270aa|up_5|NZ_CP047962.1_4201675_4202485_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|257aa|up_4|NZ_CP047962.1_4202850_4203621_+	pfam07722, Peptidase_C26, Peptidase C26	NA|135aa|up_3|NZ_CP047962.1_4203617_4204022_-	NA	NA|237aa|up_2|NZ_CP047962.1_4204114_4204825_-	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA|319aa|up_1|NZ_CP047962.1_4204871_4205828_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|227aa|up_0|NZ_CP047962.1_4205820_4206501_-	COG3159, COG3159, Uncharacterized protein conserved in bacteria [Function unknown]	NA|417aa|down_0|NZ_CP047962.1_4207583_4208834_-	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|69aa|down_1|NZ_CP047962.1_4208854_4209061_-	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|105aa|down_2|NZ_CP047962.1_4209134_4209449_+	TIGR03421, FeS_CyaY, iron donor protein CyaY	NA|218aa|down_3|NZ_CP047962.1_4209463_4210117_+	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase	NA|840aa|down_4|NZ_CP047962.1_4210194_4212714_-	PRK09450, cyaA, class I adenylate cyclase	NA|310aa|down_5|NZ_CP047962.1_4213036_4213966_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|245aa|down_6|NZ_CP047962.1_4214012_4214747_+	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed	NA|359aa|down_7|NZ_CP047962.1_4214743_4215820_+	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase	NA|388aa|down_8|NZ_CP047962.1_4215830_4216994_+	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|84aa|down_9|NZ_CP047962.1_4217168_4217420_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain
GCF_009931135.1_ASM993113v1	NZ_CP047962	Aeromonas media strain MC64 chromosome, complete genome	8	4395630-4395738	8	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3	Orphan	GCATCAACTCCAGACCAAATCGTCCGGGTTGGC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,c2c9_V-U4,cas14j,cas3,cas2,cas1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csx1,csx16,PD-DExK	NA|31aa|up_9|NZ_CP047962.1_4386588_4386681_-,NA	NA|31aa|up_9|NZ_CP047962.1_4386588_4386681_-	NA	NA|183aa|up_8|NZ_CP047962.1_4386806_4387355_+	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|235aa|up_7|NZ_CP047962.1_4387431_4388136_-	PRK06483, PRK06483, dihydromonapterin reductase; Provisional	NA|135aa|up_6|NZ_CP047962.1_4388265_4388670_+	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|179aa|up_5|NZ_CP047962.1_4388666_4389203_-	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown]	NA|255aa|up_4|NZ_CP047962.1_4389286_4390051_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|154aa|up_3|NZ_CP047962.1_4390146_4390608_-	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional	NA|331aa|up_2|NZ_CP047962.1_4390762_4391755_+	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional	NA|858aa|up_1|NZ_CP047962.1_4392040_4394614_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|246aa|up_0|NZ_CP047962.1_4394785_4395523_-	PRK10723, PRK10723, polyphenol oxidase	NA|255aa|down_0|NZ_CP047962.1_4396796_4397561_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|443aa|down_1|NZ_CP047962.1_4397760_4399089_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|467aa|down_2|NZ_CP047962.1_4399161_4400562_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|431aa|down_3|NZ_CP047962.1_4400718_4402011_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|495aa|down_4|NZ_CP047962.1_4402333_4403818_-	PRK09444, pntB, Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA|509aa|down_5|NZ_CP047962.1_4403829_4405356_-	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA|388aa|down_6|NZ_CP047962.1_4405861_4407025_-	PRK15138, PRK15138, alcohol dehydrogenase	NA|301aa|down_7|NZ_CP047962.1_4407168_4408071_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|171aa|down_8|NZ_CP047962.1_4408087_4408600_+	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|173aa|down_9|NZ_CP047962.1_4410775_4411294_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily
