assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	1	750641-750728	1	CRISPRCasFinder	no		csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Orphan	GGTACTTCGTACCGTTCTCGGGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|337aa|up_6|NZ_CP042596.1_742853_743864_-,NA|63aa|up_2|NZ_CP042596.1_748502_748691_-,NA|105aa|down_7|NZ_CP042596.1_758806_759121_-	NA|913aa|up_9|NZ_CP042596.1_738232_740971_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|154aa|up_8|NZ_CP042596.1_741316_741778_+	pfam09537, DUF2383, Domain of unknown function (DUF2383)	NA|301aa|up_7|NZ_CP042596.1_741894_742797_-	pfam02673, BacA, Bacitracin resistance protein BacA	NA|337aa|up_6|NZ_CP042596.1_742853_743864_-	NA	NA|331aa|up_5|NZ_CP042596.1_744147_745140_-	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|363aa|up_4|NZ_CP042596.1_745188_746277_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|555aa|up_3|NZ_CP042596.1_746611_748276_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|63aa|up_2|NZ_CP042596.1_748502_748691_-	NA	NA|284aa|up_1|NZ_CP042596.1_748775_749627_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|308aa|up_0|NZ_CP042596.1_749690_750614_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|160aa|down_0|NZ_CP042596.1_750879_751359_-	pfam07609, DUF1572, Protein of unknown function (DUF1572)	NA|601aa|down_1|NZ_CP042596.1_751411_753214_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|147aa|down_2|NZ_CP042596.1_753336_753777_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|426aa|down_3|NZ_CP042596.1_753881_755159_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|230aa|down_4|NZ_CP042596.1_755189_755879_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|478aa|down_5|NZ_CP042596.1_755962_757396_-	PRK09084, PRK09084, aspartate kinase III; Validated	NA|370aa|down_6|NZ_CP042596.1_757392_758502_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|105aa|down_7|NZ_CP042596.1_758806_759121_-	NA	NA|256aa|down_8|NZ_CP042596.1_759200_759968_-	cd04221, MauL, Methylamine utilization protein MauL	NA|340aa|down_9|NZ_CP042596.1_760190_761210_-	PRK08997, PRK08997, isocitrate dehydrogenase; Provisional
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	2	800044-800143	2	CRISPRCasFinder	no		csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Orphan	TGACCCCGACCGTCCGACGATGAAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|116aa|up_6|NZ_CP042596.1_788205_788553_-,NA|391aa|down_0|NZ_CP042596.1_801238_802411_+	NA|600aa|up_9|NZ_CP042596.1_784290_786090_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|293aa|up_8|NZ_CP042596.1_786213_787092_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|327aa|up_7|NZ_CP042596.1_787217_788198_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|116aa|up_6|NZ_CP042596.1_788205_788553_-	NA	NA|258aa|up_5|NZ_CP042596.1_790192_790966_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|392aa|up_4|NZ_CP042596.1_790962_792138_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|917aa|up_3|NZ_CP042596.1_792168_794919_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|644aa|up_2|NZ_CP042596.1_795346_797278_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|251aa|up_1|NZ_CP042596.1_797375_798128_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|279aa|up_0|NZ_CP042596.1_798233_799070_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|391aa|down_0|NZ_CP042596.1_801238_802411_+	NA	NA|397aa|down_1|NZ_CP042596.1_802643_803834_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|463aa|down_2|NZ_CP042596.1_804012_805401_-	cd00551, AmyAc_family, Alpha amylase catalytic domain family	NA|407aa|down_3|NZ_CP042596.1_805500_806721_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|298aa|down_4|NZ_CP042596.1_806717_807611_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|299aa|down_5|NZ_CP042596.1_807614_808511_-	pfam02548, Pantoate_transf, Ketopantoate hydroxymethyltransferase	NA|1491aa|down_6|NZ_CP042596.1_808752_813225_+	PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional	NA|325aa|down_7|NZ_CP042596.1_813594_814569_+	cd19163, AKR_galDH, L-galactose dehydrogenase (L-galDH) and similar proteins	NA|917aa|down_8|NZ_CP042596.1_814940_817691_+	cd06240, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|959aa|down_9|NZ_CP042596.1_817874_820751_+	cd06240, M14-like, Peptidase M14-like domain; uncharacterized subgroup
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	3	1358765-1359525	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9,PD-DExK	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Type II-B,Type II-C,Type II-A	GCTGGGGATGGCCGGGATTCACCGCTCAAGTACACT,GCTGGGGATGGCCGGGATTCACCGCTCAAGTACACT,GCTGGGGATGGCCGGGATTCACCGCTCAAGTACACT	36,36,36	3	3	1359065-1359094|1359131-1359160|1359394-1359423	NZ_CP042596.1_3486492-3486521|NZ_CP042596.1_3485648-3485677|NZ_CP042596.1_3459042-3459071	NA:NA:NA	11,11,11	11	TypeII-B,TypeII-C,TypeII-A	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|145aa|up_9|NZ_CP042596.1_1348761_1349196_-,NA|134aa|up_8|NZ_CP042596.1_1349583_1349985_-,NA|74aa|up_2|NZ_CP042596.1_1357589_1357811_+,NA|106aa|up_0|NZ_CP042596.1_1358331_1358649_+,NA|300aa|down_4|NZ_CP042596.1_1366216_1367116_-,NA|346aa|down_5|NZ_CP042596.1_1367205_1368243_-,NA|585aa|down_7|NZ_CP042596.1_1370210_1371965_+	NA|145aa|up_9|NZ_CP042596.1_1348761_1349196_-	NA	NA|134aa|up_8|NZ_CP042596.1_1349583_1349985_-	NA	NA|214aa|up_7|NZ_CP042596.1_1349981_1350623_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|195aa|up_6|NZ_CP042596.1_1350735_1351320_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|1173aa|up_5|NZ_CP042596.1_1351624_1355143_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|120aa|up_4|NZ_CP042596.1_1355620_1355980_-	pfam08031, BBE, Berberine and berberine like	NA|67aa|up_3|NZ_CP042596.1_1357240_1357441_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|up_2|NZ_CP042596.1_1357589_1357811_+	NA	NA|113aa|up_1|NZ_CP042596.1_1357952_1358291_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|106aa|up_0|NZ_CP042596.1_1358331_1358649_+	NA	cas2|113aa|down_0|NZ_CP042596.1_1359575_1359914_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|329aa|down_1|NZ_CP042596.1_1359946_1360933_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1083aa|down_2|NZ_CP042596.1_1360925_1364174_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|510aa|down_3|NZ_CP042596.1_1364352_1365882_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|300aa|down_4|NZ_CP042596.1_1366216_1367116_-	NA	NA|346aa|down_5|NZ_CP042596.1_1367205_1368243_-	NA	PD-DExK|271aa|down_6|NZ_CP042596.1_1368991_1369804_-	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|585aa|down_7|NZ_CP042596.1_1370210_1371965_+	NA	NA|392aa|down_8|NZ_CP042596.1_1372219_1373395_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|54aa|down_9|NZ_CP042596.1_1373875_1374037_+	pfam12728, HTH_17, Helix-turn-helix domain
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	4	2600182-2600276	4	CRISPRCasFinder	no		csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Orphan	AGATGAGCAAGCGCCTGCGCTTCAAG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|57aa|up_9|NZ_CP042596.1_2592296_2592467_-,NA|295aa|up_7|NZ_CP042596.1_2594425_2595310_-,NA|161aa|up_4|NZ_CP042596.1_2596517_2597000_-,NA|100aa|up_3|NZ_CP042596.1_2597000_2597300_-,NA|82aa|up_2|NZ_CP042596.1_2597477_2597723_-,NA|183aa|up_0|NZ_CP042596.1_2598291_2598840_-,NA|137aa|down_0|NZ_CP042596.1_2601075_2601486_-,NA|603aa|down_1|NZ_CP042596.1_2601539_2603348_-,NA|122aa|down_5|NZ_CP042596.1_2609931_2610297_+,NA|596aa|down_6|NZ_CP042596.1_2610293_2612081_+,NA|71aa|down_7|NZ_CP042596.1_2612119_2612332_+,NA|164aa|down_8|NZ_CP042596.1_2612865_2613357_+,NA|427aa|down_9|NZ_CP042596.1_2613429_2614710_+	NA|57aa|up_9|NZ_CP042596.1_2592296_2592467_-	NA	NA|254aa|up_8|NZ_CP042596.1_2592970_2593732_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|295aa|up_7|NZ_CP042596.1_2594425_2595310_-	NA	NA|107aa|up_6|NZ_CP042596.1_2595676_2595997_-	cd18809, SF1_C_RecD, C-terminal helicase domain of RecD family helicases	NA|167aa|up_5|NZ_CP042596.1_2596015_2596516_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|161aa|up_4|NZ_CP042596.1_2596517_2597000_-	NA	NA|100aa|up_3|NZ_CP042596.1_2597000_2597300_-	NA	NA|82aa|up_2|NZ_CP042596.1_2597477_2597723_-	NA	NA|178aa|up_1|NZ_CP042596.1_2597694_2598228_-	sd00006, TPR, Tetratricopeptide repeat	NA|183aa|up_0|NZ_CP042596.1_2598291_2598840_-	NA	NA|137aa|down_0|NZ_CP042596.1_2601075_2601486_-	NA	NA|603aa|down_1|NZ_CP042596.1_2601539_2603348_-	NA	NA|380aa|down_2|NZ_CP042596.1_2603586_2604726_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|251aa|down_3|NZ_CP042596.1_2605406_2606159_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|1001aa|down_4|NZ_CP042596.1_2606849_2609852_+	cd04056, Peptidases_S53, Peptidase domain in the S53 family	NA|122aa|down_5|NZ_CP042596.1_2609931_2610297_+	NA	NA|596aa|down_6|NZ_CP042596.1_2610293_2612081_+	NA	NA|71aa|down_7|NZ_CP042596.1_2612119_2612332_+	NA	NA|164aa|down_8|NZ_CP042596.1_2612865_2613357_+	NA	NA|427aa|down_9|NZ_CP042596.1_2613429_2614710_+	NA
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	5	4084275-4084361	5	CRISPRCasFinder	no		csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Orphan	CCGACCAACGGAAGGCCCCATGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|365aa|up_7|NZ_CP042596.1_4070921_4072016_-,NA|495aa|up_6|NZ_CP042596.1_4072168_4073653_-,NA|312aa|down_6|NZ_CP042596.1_4095605_4096541_+	NA|291aa|up_9|NZ_CP042596.1_4069480_4070353_-	cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)	NA|94aa|up_8|NZ_CP042596.1_4070562_4070844_+	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|365aa|up_7|NZ_CP042596.1_4070921_4072016_-	NA	NA|495aa|up_6|NZ_CP042596.1_4072168_4073653_-	NA	NA|693aa|up_5|NZ_CP042596.1_4073856_4075935_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|489aa|up_4|NZ_CP042596.1_4076257_4077724_-	cd05678, M20_dipept_like, uncharacterized M20 dipeptidase	NA|900aa|up_3|NZ_CP042596.1_4077833_4080533_-	cd06240, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|481aa|up_2|NZ_CP042596.1_4080646_4082089_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|307aa|up_1|NZ_CP042596.1_4082305_4083226_+	PRK12921, PRK12921, oxidoreductase	NA|307aa|up_0|NZ_CP042596.1_4083314_4084235_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|451aa|down_0|NZ_CP042596.1_4084421_4085774_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|458aa|down_1|NZ_CP042596.1_4085904_4087278_-	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM	NA|421aa|down_2|NZ_CP042596.1_4087407_4088670_-	PRK08197, PRK08197, threonine synthase; Validated	NA|412aa|down_3|NZ_CP042596.1_4088757_4089993_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|810aa|down_4|NZ_CP042596.1_4090553_4092983_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|748aa|down_5|NZ_CP042596.1_4093189_4095433_+	pfam01804, Penicil_amidase, Penicillin amidase	NA|312aa|down_6|NZ_CP042596.1_4095605_4096541_+	NA	NA|168aa|down_7|NZ_CP042596.1_4096603_4097107_-	cd07909, YciF, YciF bacterial stress response protein, ferritin-like iron-binding domain	NA|256aa|down_8|NZ_CP042596.1_4097528_4098296_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|432aa|down_9|NZ_CP042596.1_4098312_4099608_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
GCF_009914315.1_ASM991431v1	NZ_CP042596	Granulicella sp. WH15 chromosome, complete genome	6	4333830-4333991	6	CRISPRCasFinder	no		csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	Orphan	AGTCATCTTCTGAGGGCCTTCCGCTGGTCGGCAGCGAGAATCTTTCTTTCCGAC	54	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL	NA|112aa|up_9|NZ_CP042596.1_4322727_4323063_+,NA|202aa|up_2|NZ_CP042596.1_4330795_4331401_-,NA|99aa|down_2|NZ_CP042596.1_4337433_4337730_-,NA|435aa|down_3|NZ_CP042596.1_4337797_4339102_-	NA|112aa|up_9|NZ_CP042596.1_4322727_4323063_+	NA	NA|176aa|up_8|NZ_CP042596.1_4323222_4323750_-	pfam13430, DUF4112, Domain of unknown function (DUF4112)	NA|336aa|up_7|NZ_CP042596.1_4324049_4325057_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|445aa|up_6|NZ_CP042596.1_4325167_4326502_+	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase	NA|110aa|up_5|NZ_CP042596.1_4326855_4327185_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|397aa|up_4|NZ_CP042596.1_4327356_4328547_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|225aa|up_3|NZ_CP042596.1_4330002_4330677_+	smart00935, OmpH, Outer membrane protein (OmpH-like)	NA|202aa|up_2|NZ_CP042596.1_4330795_4331401_-	NA	NA|100aa|up_1|NZ_CP042596.1_4331493_4331793_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|601aa|up_0|NZ_CP042596.1_4331947_4333750_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|644aa|down_0|NZ_CP042596.1_4334083_4336015_+	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|79aa|down_1|NZ_CP042596.1_4336890_4337127_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|99aa|down_2|NZ_CP042596.1_4337433_4337730_-	NA	NA|435aa|down_3|NZ_CP042596.1_4337797_4339102_-	NA	NA|246aa|down_4|NZ_CP042596.1_4339503_4340241_+	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide	NA|223aa|down_5|NZ_CP042596.1_4340255_4340924_-	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|145aa|down_6|NZ_CP042596.1_4340920_4341355_-	pfam14526, Cass2, Integron-associated effector binding protein	NA|479aa|down_7|NZ_CP042596.1_4341351_4342788_-	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria	NA|376aa|down_8|NZ_CP042596.1_4342787_4343915_-	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]	NA|344aa|down_9|NZ_CP042596.1_4345325_4346357_+	TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain
