assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913675.1_ASM991367v1	NZ_CP028275	Lactobacillus plantarum strain SRCM100995 chromosome, complete genome	1	1442249-1444264	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2,csa3	cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	Type II-B,Type II-A,Type II-C	GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	29,30,7	30	TypeII-B,TypeII-A,TypeII-C	cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	NA|236aa|up_5|NZ_CP028275.1_1434288_1434996_+,NA	NA|531aa|up_9|NZ_CP028275.1_1428630_1430223_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|157aa|up_8|NZ_CP028275.1_1430338_1430809_-	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|455aa|up_7|NZ_CP028275.1_1431041_1432406_+	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|565aa|up_6|NZ_CP028275.1_1432363_1434058_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|236aa|up_5|NZ_CP028275.1_1434288_1434996_+	NA	NA|261aa|up_4|NZ_CP028275.1_1435020_1435803_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	cas9|1359aa|up_3|NZ_CP028275.1_1436091_1440168_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP028275.1_1440361_1441267_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP028275.1_1441244_1441550_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|NZ_CP028275.1_1441546_1442224_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|913aa|down_0|NZ_CP028275.1_1444327_1447066_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|253aa|down_1|NZ_CP028275.1_1447350_1448109_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|65aa|down_2|NZ_CP028275.1_1448151_1448346_-	pfam04024, PspC, PspC domain	NA|201aa|down_3|NZ_CP028275.1_1448411_1449014_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|158aa|down_4|NZ_CP028275.1_1449127_1449601_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|141aa|down_5|NZ_CP028275.1_1449746_1450169_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|411aa|down_6|NZ_CP028275.1_1451291_1452524_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	csa3|122aa|down_7|NZ_CP028275.1_1452548_1452914_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|398aa|down_8|NZ_CP028275.1_1452978_1454172_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|283aa|down_9|NZ_CP028275.1_1454415_1455264_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins
GCF_009913675.1_ASM991367v1	NZ_CP028275	Lactobacillus plantarum strain SRCM100995 chromosome, complete genome	2	2346873-2347029	2	PILER-CR	no		cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	Orphan	AGAGTATTAATCAAGCGACCCGTACAAGCAATCAAGAATCCAGTAGTACGAAAAA	55	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	NA|211aa|up_5|NZ_CP028275.1_2340335_2340968_+,NA|407aa|up_4|NZ_CP028275.1_2340954_2342175_+,NA|102aa|down_4|NZ_CP028275.1_2355252_2355558_+,NA|71aa|down_6|NZ_CP028275.1_2355916_2356129_-,NA|65aa|down_7|NZ_CP028275.1_2356243_2356438_-	NA|333aa|up_9|NZ_CP028275.1_2334092_2335091_+	pfam11380, Stealth_CR2, Stealth protein CR2, conserved region 2	NA|366aa|up_8|NZ_CP028275.1_2335147_2336245_+	pfam14897, EpsG, EpsG family	NA|298aa|up_7|NZ_CP028275.1_2336295_2337189_+	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|474aa|up_6|NZ_CP028275.1_2337396_2338818_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|211aa|up_5|NZ_CP028275.1_2340335_2340968_+	NA	NA|407aa|up_4|NZ_CP028275.1_2340954_2342175_+	NA	NA|370aa|up_3|NZ_CP028275.1_2342171_2343281_+	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|360aa|up_2|NZ_CP028275.1_2343264_2344344_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|259aa|up_1|NZ_CP028275.1_2344479_2345256_+	pfam14393, DUF4422, Domain of unknown function (DUF4422)	NA|249aa|up_0|NZ_CP028275.1_2345380_2346127_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|147aa|down_0|NZ_CP028275.1_2349846_2350287_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|474aa|down_1|NZ_CP028275.1_2350416_2351838_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|421aa|down_2|NZ_CP028275.1_2352349_2353612_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|226aa|down_3|NZ_CP028275.1_2353716_2354394_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|102aa|down_4|NZ_CP028275.1_2355252_2355558_+	NA	NA|76aa|down_5|NZ_CP028275.1_2355659_2355887_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|71aa|down_6|NZ_CP028275.1_2355916_2356129_-	NA	NA|65aa|down_7|NZ_CP028275.1_2356243_2356438_-	NA	NA|183aa|down_8|NZ_CP028275.1_2356473_2357022_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|253aa|down_9|NZ_CP028275.1_2357256_2358015_+	pfam06338, ComK, ComK protein
GCF_009913675.1_ASM991367v1	NZ_CP028280	Lactobacillus plantarum strain SRCM100995 plasmid unnamed5, complete sequence	1	15299-15455	1	CRISPRCasFinder	no			Orphan	TGAACCCCTTGGTACAAGCGGACTTCTCAAAAAGAGA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	NA|112aa|up_9|NZ_CP028280.1_1863_2199_+,NA|99aa|up_8|NZ_CP028280.1_2305_2602_+,NA|80aa|up_4|NZ_CP028280.1_11869_12109_-,NA|135aa|up_3|NZ_CP028280.1_12179_12584_-,NA|61aa|up_2|NZ_CP028280.1_12674_12857_-,NA|83aa|up_0|NZ_CP028280.1_14029_14278_+,NA|66aa|down_0|NZ_CP028280.1_16133_16331_+,NA|93aa|down_2|NZ_CP028280.1_17192_17471_-,NA|70aa|down_3|NZ_CP028280.1_17493_17703_-,NA|72aa|down_6|NZ_CP028280.1_22390_22606_+	NA|112aa|up_9|NZ_CP028280.1_1863_2199_+	NA	NA|99aa|up_8|NZ_CP028280.1_2305_2602_+	NA	NA|410aa|up_7|NZ_CP028280.1_3042_4272_+	smart00901, FRG, This domain contains a conserved N-terminal (F/Y)RG motif	NA|194aa|up_6|NZ_CP028280.1_4750_5332_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|652aa|up_5|NZ_CP028280.1_5759_7715_+	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase	NA|80aa|up_4|NZ_CP028280.1_11869_12109_-	NA	NA|135aa|up_3|NZ_CP028280.1_12179_12584_-	NA	NA|61aa|up_2|NZ_CP028280.1_12674_12857_-	NA	NA|269aa|up_1|NZ_CP028280.1_13209_14016_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|83aa|up_0|NZ_CP028280.1_14029_14278_+	NA	NA|66aa|down_0|NZ_CP028280.1_16133_16331_+	NA	NA|274aa|down_1|NZ_CP028280.1_16381_17203_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|93aa|down_2|NZ_CP028280.1_17192_17471_-	NA	NA|70aa|down_3|NZ_CP028280.1_17493_17703_-	NA	NA|688aa|down_4|NZ_CP028280.1_17974_20038_+	pfam03389, MobA_MobL, MobA/MobL family	NA|712aa|down_5|NZ_CP028280.1_20134_22270_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|72aa|down_6|NZ_CP028280.1_22390_22606_+	NA	NA|241aa|down_7|NZ_CP028280.1_23845_24568_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|806aa|down_8|NZ_CP028280.1_25710_28128_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|568aa|down_9|NZ_CP028280.1_28156_29860_-	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain
GCF_009913675.1_ASM991367v1	NZ_CP028276	Lactobacillus plantarum strain SRCM100995 plasmid unnamed1, complete sequence	1	48691-48864	1	CRT	no	csa3	csa3	Type I-A	AATACAGCCAGTAATACA	18	4	4	48709-48726|48745-48762|48781-48810|48829-48846	NZ_CP028276.1_48853-48870|NZ_CP028276.1_48853-48870|NZ_CP028276.1_48841-48870|NZ_CP028276.1_48853-48870	NA	4	4	Orphan	cas3,csa3,WYL,cas9,cas1,cas2,csn2,DinG,DEDDh	NA|30aa|up_8|NZ_CP028276.1_39797_39887_-,NA|110aa|up_0|NZ_CP028276.1_47881_48211_+,NA|121aa|down_6|NZ_CP028276.1_56950_57313_-	NA|465aa|up_9|NZ_CP028276.1_37405_38800_+	TIGR01000, Mesentericin_Y105_secretion_protein_MesE, bacteriocin secretion accessory protein	NA|30aa|up_8|NZ_CP028276.1_39797_39887_-	NA	NA|299aa|up_7|NZ_CP028276.1_40073_40970_-	cd17278, RMtype1_S_LdeBORF1052P-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Lactobacillus delbrueckii subsp	NA|185aa|up_6|NZ_CP028276.1_41246_41801_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|843aa|up_5|NZ_CP028276.1_42408_44937_-	COG3933, COG3933, Transcriptional antiterminator [Transcription]	NA|145aa|up_4|NZ_CP028276.1_45170_45605_+	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit	NA|165aa|up_3|NZ_CP028276.1_45620_46115_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|283aa|up_2|NZ_CP028276.1_46148_46997_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|282aa|up_1|NZ_CP028276.1_46999_47845_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|110aa|up_0|NZ_CP028276.1_47881_48211_+	NA	csa3|221aa|down_0|NZ_CP028276.1_51923_52586_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|95aa|down_1|NZ_CP028276.1_52721_53006_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|308aa|down_2|NZ_CP028276.1_53027_53951_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|217aa|down_3|NZ_CP028276.1_53966_54617_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|105aa|down_4|NZ_CP028276.1_54771_55086_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|446aa|down_5|NZ_CP028276.1_55107_56445_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|121aa|down_6|NZ_CP028276.1_56950_57313_-	NA	NA|147aa|down_7|NZ_CP028276.1_57339_57780_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|146aa|down_8|NZ_CP028276.1_57916_58354_+	pfam02566, OsmC, OsmC-like protein	NA|139aa|down_9|NZ_CP028276.1_58371_58788_+	pfam02566, OsmC, OsmC-like protein
